Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03040

Experiment: Dextran, Mw ~200,000 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03038 and BACOVA_03039 are separated by 112 nucleotidesBACOVA_03039 and BACOVA_03040 are separated by 68 nucleotidesBACOVA_03040 and BACOVA_03041 are separated by 76 nucleotidesBACOVA_03041 and BACOVA_03042 are separated by 0 nucleotidesBACOVA_03042 and BACOVA_03043 are separated by 31 nucleotides BACOVA_03038: BACOVA_03038 - transcriptional regulator, GntR family, at 113,294 to 114,706 _03038 BACOVA_03039: BACOVA_03039 - hypothetical protein, at 114,819 to 114,923 _03039 BACOVA_03040: BACOVA_03040 - hypothetical protein, at 114,992 to 115,111 _03040 BACOVA_03041: BACOVA_03041 - hypothetical protein, at 115,188 to 115,304 _03041 BACOVA_03042: BACOVA_03042 - transcriptional regulator, effector binding domain protein, at 115,305 to 115,775 _03042 BACOVA_03043: BACOVA_03043 - transcriptional regulator, effector binding domain protein, at 115,807 to 116,937 _03043 Position (kb) 114 115 116Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 113.994 kb on - strand, within BACOVA_03038at 114.064 kb on + strand, within BACOVA_03038at 114.065 kb on - strand, within BACOVA_03038at 114.080 kb on + strand, within BACOVA_03038at 114.080 kb on + strand, within BACOVA_03038at 114.080 kb on + strand, within BACOVA_03038at 114.114 kb on - strand, within BACOVA_03038at 114.144 kb on - strand, within BACOVA_03038at 114.149 kb on + strand, within BACOVA_03038at 114.149 kb on + strand, within BACOVA_03038at 114.149 kb on + strand, within BACOVA_03038at 114.168 kb on - strand, within BACOVA_03038at 114.181 kb on + strand, within BACOVA_03038at 114.181 kb on + strand, within BACOVA_03038at 114.182 kb on - strand, within BACOVA_03038at 114.187 kb on + strand, within BACOVA_03038at 114.217 kb on + strand, within BACOVA_03038at 114.219 kb on + strand, within BACOVA_03038at 114.235 kb on + strand, within BACOVA_03038at 114.237 kb on + strand, within BACOVA_03038at 114.237 kb on + strand, within BACOVA_03038at 114.238 kb on - strand, within BACOVA_03038at 114.238 kb on - strand, within BACOVA_03038at 114.273 kb on + strand, within BACOVA_03038at 114.323 kb on - strand, within BACOVA_03038at 114.344 kb on + strand, within BACOVA_03038at 114.344 kb on + strand, within BACOVA_03038at 114.383 kb on - strand, within BACOVA_03038at 114.408 kb on - strand, within BACOVA_03038at 114.420 kb on - strand, within BACOVA_03038at 114.485 kb on + strand, within BACOVA_03038at 114.486 kb on - strand, within BACOVA_03038at 114.495 kb on + strand, within BACOVA_03038at 114.495 kb on + strand, within BACOVA_03038at 114.556 kb on - strand, within BACOVA_03038at 114.559 kb on - strand, within BACOVA_03038at 114.559 kb on - strand, within BACOVA_03038at 114.560 kb on + strand, within BACOVA_03038at 114.560 kb on + strand, within BACOVA_03038at 114.561 kb on - strand, within BACOVA_03038at 114.585 kb on - strandat 114.611 kb on + strandat 114.612 kb on - strandat 114.684 kb on - strandat 114.689 kb on + strandat 114.689 kb on + strandat 114.690 kb on - strandat 114.690 kb on - strandat 114.710 kb on + strandat 114.717 kb on + strandat 114.717 kb on + strandat 114.731 kb on - strandat 114.748 kb on - strandat 114.812 kb on + strandat 114.828 kb on - strandat 114.836 kb on - strand, within BACOVA_03039at 114.836 kb on - strand, within BACOVA_03039at 114.840 kb on + strand, within BACOVA_03039at 114.841 kb on - strand, within BACOVA_03039at 114.855 kb on + strand, within BACOVA_03039at 114.866 kb on + strand, within BACOVA_03039at 114.879 kb on - strand, within BACOVA_03039at 114.880 kb on + strand, within BACOVA_03039at 114.880 kb on + strand, within BACOVA_03039at 114.881 kb on - strand, within BACOVA_03039at 114.893 kb on + strand, within BACOVA_03039at 114.894 kb on - strand, within BACOVA_03039at 114.908 kb on + strand, within BACOVA_03039at 114.930 kb on + strandat 115.036 kb on + strand, within BACOVA_03040at 115.053 kb on + strand, within BACOVA_03040at 115.096 kb on + strand, within BACOVA_03040at 115.109 kb on + strandat 115.109 kb on + strandat 115.110 kb on - strandat 115.152 kb on - strandat 115.152 kb on - strandat 115.163 kb on + strandat 115.164 kb on - strandat 115.203 kb on + strand, within BACOVA_03041at 115.204 kb on - strand, within BACOVA_03041at 115.255 kb on + strand, within BACOVA_03041at 115.276 kb on - strand, within BACOVA_03041at 115.277 kb on + strand, within BACOVA_03041at 115.278 kb on - strand, within BACOVA_03041at 115.308 kb on + strandat 115.309 kb on - strandat 115.366 kb on + strand, within BACOVA_03042at 115.367 kb on - strand, within BACOVA_03042at 115.373 kb on - strand, within BACOVA_03042at 115.456 kb on + strand, within BACOVA_03042at 115.456 kb on + strand, within BACOVA_03042at 115.456 kb on + strand, within BACOVA_03042at 115.457 kb on - strand, within BACOVA_03042at 115.466 kb on + strand, within BACOVA_03042at 115.467 kb on - strand, within BACOVA_03042at 115.470 kb on + strand, within BACOVA_03042at 115.505 kb on + strand, within BACOVA_03042at 115.512 kb on + strand, within BACOVA_03042at 115.512 kb on + strand, within BACOVA_03042at 115.530 kb on + strand, within BACOVA_03042at 115.531 kb on - strand, within BACOVA_03042at 115.556 kb on + strand, within BACOVA_03042at 115.568 kb on + strand, within BACOVA_03042at 115.601 kb on - strand, within BACOVA_03042at 115.609 kb on + strand, within BACOVA_03042at 115.647 kb on + strand, within BACOVA_03042at 115.711 kb on - strand, within BACOVA_03042at 115.749 kb on + strandat 115.800 kb on + strandat 115.800 kb on + strandat 115.800 kb on + strandat 115.805 kb on - strandat 115.829 kb on + strandat 115.830 kb on - strandat 115.840 kb on - strandat 115.843 kb on + strandat 115.843 kb on + strandat 115.844 kb on - strandat 115.913 kb on + strandat 115.913 kb on + strandat 115.918 kb on - strandat 115.944 kb on + strand, within BACOVA_03043at 115.945 kb on - strand, within BACOVA_03043at 115.966 kb on + strand, within BACOVA_03043at 115.983 kb on + strand, within BACOVA_03043at 115.993 kb on + strand, within BACOVA_03043at 115.995 kb on + strand, within BACOVA_03043at 116.020 kb on + strand, within BACOVA_03043at 116.020 kb on + strand, within BACOVA_03043at 116.021 kb on - strand, within BACOVA_03043at 116.060 kb on - strand, within BACOVA_03043at 116.072 kb on + strand, within BACOVA_03043

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Per-strain Table

Position Strand Gene LocusTag Fraction Dextran, Mw ~200,000 2.5 mg/ml (C)
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113,994 - BACOVA_03038 0.50 -0.7
114,064 + BACOVA_03038 0.54 +0.5
114,065 - BACOVA_03038 0.55 -2.9
114,080 + BACOVA_03038 0.56 -1.0
114,080 + BACOVA_03038 0.56 -1.4
114,080 + BACOVA_03038 0.56 -0.5
114,114 - BACOVA_03038 0.58 -0.2
114,144 - BACOVA_03038 0.60 +0.0
114,149 + BACOVA_03038 0.61 +0.5
114,149 + BACOVA_03038 0.61 +1.3
114,149 + BACOVA_03038 0.61 +1.4
114,168 - BACOVA_03038 0.62 +0.1
114,181 + BACOVA_03038 0.63 +0.1
114,181 + BACOVA_03038 0.63 -0.2
114,182 - BACOVA_03038 0.63 -0.5
114,187 + BACOVA_03038 0.63 -0.7
114,217 + BACOVA_03038 0.65 -0.4
114,219 + BACOVA_03038 0.65 -1.4
114,235 + BACOVA_03038 0.67 -1.3
114,237 + BACOVA_03038 0.67 -1.4
114,237 + BACOVA_03038 0.67 -0.3
114,238 - BACOVA_03038 0.67 -0.7
114,238 - BACOVA_03038 0.67 -0.4
114,273 + BACOVA_03038 0.69 +1.1
114,323 - BACOVA_03038 0.73 +1.0
114,344 + BACOVA_03038 0.74 +0.0
114,344 + BACOVA_03038 0.74 +1.3
114,383 - BACOVA_03038 0.77 -0.1
114,408 - BACOVA_03038 0.79 +0.5
114,420 - BACOVA_03038 0.80 +1.2
114,485 + BACOVA_03038 0.84 -0.9
114,486 - BACOVA_03038 0.84 +0.7
114,495 + BACOVA_03038 0.85 +2.3
114,495 + BACOVA_03038 0.85 +0.4
114,556 - BACOVA_03038 0.89 -0.4
114,559 - BACOVA_03038 0.90 +0.4
114,559 - BACOVA_03038 0.90 -0.4
114,560 + BACOVA_03038 0.90 +0.6
114,560 + BACOVA_03038 0.90 +1.4
114,561 - BACOVA_03038 0.90 -0.1
114,585 - -1.0
114,611 + -0.1
114,612 - -1.6
114,684 - +0.2
114,689 + +0.9
114,689 + -1.1
114,690 - +1.3
114,690 - -0.2
114,710 + -2.9
114,717 + -1.5
114,717 + -0.4
114,731 - -0.2
114,748 - -1.6
114,812 + +0.4
114,828 - +1.3
114,836 - BACOVA_03039 0.16 -2.2
114,836 - BACOVA_03039 0.16 -0.1
114,840 + BACOVA_03039 0.20 -0.3
114,841 - BACOVA_03039 0.21 +0.7
114,855 + BACOVA_03039 0.34 -1.7
114,866 + BACOVA_03039 0.45 +0.1
114,879 - BACOVA_03039 0.57 +0.7
114,880 + BACOVA_03039 0.58 -3.5
114,880 + BACOVA_03039 0.58 -0.9
114,881 - BACOVA_03039 0.59 +1.6
114,893 + BACOVA_03039 0.70 -1.7
114,894 - BACOVA_03039 0.71 -1.7
114,908 + BACOVA_03039 0.85 -1.7
114,930 + +0.5
115,036 + BACOVA_03040 0.37 +0.1
115,053 + BACOVA_03040 0.51 -3.1
115,096 + BACOVA_03040 0.87 -1.5
115,109 + -0.5
115,109 + -0.2
115,110 - +1.2
115,152 - -0.5
115,152 - -0.5
115,163 + -0.2
115,164 - -1.1
115,203 + BACOVA_03041 0.13 -0.8
115,204 - BACOVA_03041 0.14 -2.3
115,255 + BACOVA_03041 0.57 -2.3
115,276 - BACOVA_03041 0.75 -0.7
115,277 + BACOVA_03041 0.76 -0.2
115,278 - BACOVA_03041 0.77 -0.7
115,308 + -1.2
115,309 - +0.3
115,366 + BACOVA_03042 0.13 -0.0
115,367 - BACOVA_03042 0.13 -0.4
115,373 - BACOVA_03042 0.14 -0.1
115,456 + BACOVA_03042 0.32 -2.5
115,456 + BACOVA_03042 0.32 -0.5
115,456 + BACOVA_03042 0.32 -0.3
115,457 - BACOVA_03042 0.32 -1.3
115,466 + BACOVA_03042 0.34 +0.9
115,467 - BACOVA_03042 0.34 -0.8
115,470 + BACOVA_03042 0.35 -0.5
115,505 + BACOVA_03042 0.42 +0.5
115,512 + BACOVA_03042 0.44 +0.7
115,512 + BACOVA_03042 0.44 -1.1
115,530 + BACOVA_03042 0.48 +1.5
115,531 - BACOVA_03042 0.48 -0.2
115,556 + BACOVA_03042 0.53 -0.3
115,568 + BACOVA_03042 0.56 -0.4
115,601 - BACOVA_03042 0.63 -2.5
115,609 + BACOVA_03042 0.65 +0.2
115,647 + BACOVA_03042 0.73 -0.5
115,711 - BACOVA_03042 0.86 -0.1
115,749 + -0.4
115,800 + +0.6
115,800 + -1.3
115,800 + -1.1
115,805 - +0.4
115,829 + -0.3
115,830 - -1.4
115,840 - -0.5
115,843 + +1.1
115,843 + +0.4
115,844 - +0.3
115,913 + -0.4
115,913 + -1.3
115,918 - -0.2
115,944 + BACOVA_03043 0.12 -0.9
115,945 - BACOVA_03043 0.12 +1.4
115,966 + BACOVA_03043 0.14 -1.2
115,983 + BACOVA_03043 0.16 +1.1
115,993 + BACOVA_03043 0.16 -0.5
115,995 + BACOVA_03043 0.17 +1.1
116,020 + BACOVA_03043 0.19 +0.7
116,020 + BACOVA_03043 0.19 -1.7
116,021 - BACOVA_03043 0.19 -0.1
116,060 - BACOVA_03043 0.22 +0.1
116,072 + BACOVA_03043 0.23 -0.2

Or see this region's nucleotide sequence