Experiment: Dextran, Mw ~200,000 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01549 and BACOVA_01550 are separated by 4 nucleotides BACOVA_01550 and BACOVA_01551 are separated by 88 nucleotides BACOVA_01551 and BACOVA_01552 are separated by 17 nucleotides
BACOVA_01549: BACOVA_01549 - hypothetical protein, at 49,472 to 50,788
_01549
BACOVA_01550: BACOVA_01550 - hypothetical protein, at 50,793 to 51,362
_01550
BACOVA_01551: BACOVA_01551 - hypothetical protein, at 51,451 to 51,612
_01551
BACOVA_01552: BACOVA_01552 - transcriptional regulator, AraC family, at 51,630 to 52,544
_01552
Position (kb)
50
51
52 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 49.887 kb on + strand, within BACOVA_01549 at 49.955 kb on + strand, within BACOVA_01549 at 49.955 kb on + strand, within BACOVA_01549 at 49.955 kb on + strand, within BACOVA_01549 at 50.099 kb on - strand, within BACOVA_01549 at 50.099 kb on - strand, within BACOVA_01549 at 50.161 kb on + strand, within BACOVA_01549 at 50.163 kb on + strand, within BACOVA_01549 at 50.194 kb on + strand, within BACOVA_01549 at 50.255 kb on + strand, within BACOVA_01549 at 50.255 kb on + strand, within BACOVA_01549 at 50.255 kb on + strand, within BACOVA_01549 at 50.318 kb on - strand, within BACOVA_01549 at 50.318 kb on - strand, within BACOVA_01549 at 50.416 kb on - strand, within BACOVA_01549 at 50.503 kb on - strand, within BACOVA_01549 at 50.613 kb on - strand, within BACOVA_01549 at 50.687 kb on + strand at 50.714 kb on - strand at 50.714 kb on - strand at 50.766 kb on + strand at 50.766 kb on + strand at 50.766 kb on + strand at 50.767 kb on - strand at 50.768 kb on + strand at 50.769 kb on - strand at 50.770 kb on + strand at 50.799 kb on + strand at 50.806 kb on + strand at 50.806 kb on + strand at 50.806 kb on + strand at 50.808 kb on + strand at 50.891 kb on - strand, within BACOVA_01550 at 50.974 kb on + strand, within BACOVA_01550 at 50.974 kb on + strand, within BACOVA_01550 at 50.975 kb on - strand, within BACOVA_01550 at 51.026 kb on + strand, within BACOVA_01550 at 51.027 kb on - strand, within BACOVA_01550 at 51.058 kb on + strand, within BACOVA_01550 at 51.111 kb on + strand, within BACOVA_01550 at 51.118 kb on + strand, within BACOVA_01550 at 51.184 kb on + strand, within BACOVA_01550 at 51.185 kb on - strand, within BACOVA_01550 at 51.248 kb on + strand, within BACOVA_01550 at 51.249 kb on - strand, within BACOVA_01550 at 51.249 kb on - strand, within BACOVA_01550 at 51.249 kb on - strand, within BACOVA_01550 at 51.342 kb on + strand at 51.349 kb on - strand at 51.352 kb on + strand at 51.370 kb on + strand at 51.373 kb on + strand at 51.377 kb on + strand at 51.378 kb on - strand at 51.544 kb on - strand, within BACOVA_01551 at 51.545 kb on + strand, within BACOVA_01551 at 51.546 kb on - strand, within BACOVA_01551 at 51.547 kb on + strand, within BACOVA_01551 at 51.568 kb on - strand, within BACOVA_01551 at 51.663 kb on + strand at 51.664 kb on - strand at 51.693 kb on + strand at 51.724 kb on - strand, within BACOVA_01552 at 51.764 kb on + strand, within BACOVA_01552 at 51.764 kb on + strand, within BACOVA_01552 at 51.765 kb on - strand, within BACOVA_01552 at 51.765 kb on - strand, within BACOVA_01552 at 51.813 kb on - strand, within BACOVA_01552 at 51.860 kb on - strand, within BACOVA_01552 at 51.962 kb on - strand, within BACOVA_01552 at 51.982 kb on + strand, within BACOVA_01552 at 51.982 kb on + strand, within BACOVA_01552 at 51.999 kb on + strand, within BACOVA_01552 at 51.999 kb on + strand, within BACOVA_01552 at 52.000 kb on - strand, within BACOVA_01552 at 52.240 kb on + strand, within BACOVA_01552 at 52.240 kb on + strand, within BACOVA_01552 at 52.240 kb on + strand, within BACOVA_01552 at 52.240 kb on + strand, within BACOVA_01552
Per-strain Table
Position Strand Gene LocusTag Fraction Dextran, Mw ~200,000 2.5 mg/ml (C) remove 49,887 + BACOVA_01549 0.32 -0.2 49,955 + BACOVA_01549 0.37 -0.5 49,955 + BACOVA_01549 0.37 -1.5 49,955 + BACOVA_01549 0.37 -1.1 50,099 - BACOVA_01549 0.48 -0.8 50,099 - BACOVA_01549 0.48 -0.6 50,161 + BACOVA_01549 0.52 +0.9 50,163 + BACOVA_01549 0.52 +0.7 50,194 + BACOVA_01549 0.55 -1.0 50,255 + BACOVA_01549 0.59 -0.0 50,255 + BACOVA_01549 0.59 -0.8 50,255 + BACOVA_01549 0.59 -0.9 50,318 - BACOVA_01549 0.64 +1.5 50,318 - BACOVA_01549 0.64 +1.1 50,416 - BACOVA_01549 0.72 +0.8 50,503 - BACOVA_01549 0.78 +1.2 50,613 - BACOVA_01549 0.87 +1.8 50,687 + -1.0 50,714 - +0.4 50,714 - +1.8 50,766 + -0.3 50,766 + +1.2 50,766 + -0.8 50,767 - -1.4 50,768 + +0.0 50,769 - +0.1 50,770 + +0.3 50,799 + +1.3 50,806 + +0.2 50,806 + -0.1 50,806 + -1.1 50,808 + +1.2 50,891 - BACOVA_01550 0.17 +0.2 50,974 + BACOVA_01550 0.32 +2.5 50,974 + BACOVA_01550 0.32 -1.3 50,975 - BACOVA_01550 0.32 +0.5 51,026 + BACOVA_01550 0.41 +0.8 51,027 - BACOVA_01550 0.41 +0.3 51,058 + BACOVA_01550 0.46 -0.4 51,111 + BACOVA_01550 0.56 -1.0 51,118 + BACOVA_01550 0.57 -1.3 51,184 + BACOVA_01550 0.69 -0.9 51,185 - BACOVA_01550 0.69 +1.6 51,248 + BACOVA_01550 0.80 +0.2 51,249 - BACOVA_01550 0.80 +0.3 51,249 - BACOVA_01550 0.80 +0.5 51,249 - BACOVA_01550 0.80 -0.4 51,342 + -1.1 51,349 - +0.3 51,352 + -0.4 51,370 + -0.0 51,373 + +1.0 51,377 + -0.1 51,378 - +3.0 51,544 - BACOVA_01551 0.57 +1.2 51,545 + BACOVA_01551 0.58 +1.9 51,546 - BACOVA_01551 0.59 +1.7 51,547 + BACOVA_01551 0.59 +1.2 51,568 - BACOVA_01551 0.72 -0.4 51,663 + -2.0 51,664 - +0.7 51,693 + -0.8 51,724 - BACOVA_01552 0.10 -0.6 51,764 + BACOVA_01552 0.15 -0.8 51,764 + BACOVA_01552 0.15 -1.1 51,765 - BACOVA_01552 0.15 -0.1 51,765 - BACOVA_01552 0.15 +1.0 51,813 - BACOVA_01552 0.20 +1.0 51,860 - BACOVA_01552 0.25 -1.1 51,962 - BACOVA_01552 0.36 -2.4 51,982 + BACOVA_01552 0.38 -0.1 51,982 + BACOVA_01552 0.38 -0.9 51,999 + BACOVA_01552 0.40 -0.1 51,999 + BACOVA_01552 0.40 +0.0 52,000 - BACOVA_01552 0.40 -0.8 52,240 + BACOVA_01552 0.67 +0.3 52,240 + BACOVA_01552 0.67 -0.5 52,240 + BACOVA_01552 0.67 +0.9 52,240 + BACOVA_01552 0.67 -1.1
Or see this region's nucleotide sequence