Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00992

Experiment: Dextran, Mw ~200,000 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00991 and BACOVA_00992 overlap by 4 nucleotidesBACOVA_00992 and BACOVA_00993 are separated by 46 nucleotides BACOVA_00991: BACOVA_00991 - histidine ammonia-lyase, at 214,314 to 215,813 _00991 BACOVA_00992: BACOVA_00992 - Formiminotransferase-cyclodeaminase, at 215,810 to 216,439 _00992 BACOVA_00993: BACOVA_00993 - imidazolonepropionase, at 216,486 to 217,739 _00993 Position (kb) 215 216 217Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 214.947 kb on + strand, within BACOVA_00991at 214.948 kb on - strand, within BACOVA_00991at 214.972 kb on + strand, within BACOVA_00991at 215.181 kb on - strand, within BACOVA_00991at 215.181 kb on - strand, within BACOVA_00991at 215.241 kb on - strand, within BACOVA_00991at 215.247 kb on + strand, within BACOVA_00991at 215.280 kb on + strand, within BACOVA_00991at 215.309 kb on + strand, within BACOVA_00991at 215.312 kb on - strand, within BACOVA_00991at 215.315 kb on - strand, within BACOVA_00991at 215.331 kb on + strand, within BACOVA_00991at 215.454 kb on - strand, within BACOVA_00991at 215.609 kb on + strand, within BACOVA_00991at 215.616 kb on + strand, within BACOVA_00991at 215.617 kb on - strand, within BACOVA_00991at 215.617 kb on - strand, within BACOVA_00991at 215.637 kb on + strand, within BACOVA_00991at 215.637 kb on + strand, within BACOVA_00991at 215.638 kb on - strand, within BACOVA_00991at 215.684 kb on - strandat 215.706 kb on + strandat 215.706 kb on + strandat 215.749 kb on - strandat 215.751 kb on - strandat 215.799 kb on + strandat 215.799 kb on + strandat 215.808 kb on - strandat 215.813 kb on + strandat 215.955 kb on - strand, within BACOVA_00992at 215.994 kb on - strand, within BACOVA_00992at 215.994 kb on - strand, within BACOVA_00992at 216.059 kb on - strand, within BACOVA_00992at 216.059 kb on - strand, within BACOVA_00992at 216.182 kb on + strand, within BACOVA_00992at 216.183 kb on - strand, within BACOVA_00992at 216.212 kb on + strand, within BACOVA_00992at 216.212 kb on + strand, within BACOVA_00992at 216.214 kb on + strand, within BACOVA_00992at 216.214 kb on + strand, within BACOVA_00992at 216.270 kb on - strand, within BACOVA_00992at 216.325 kb on + strand, within BACOVA_00992at 216.364 kb on + strand, within BACOVA_00992at 216.365 kb on - strand, within BACOVA_00992at 216.398 kb on + strandat 216.399 kb on - strandat 216.403 kb on + strandat 216.408 kb on - strandat 216.408 kb on - strandat 216.454 kb on + strandat 216.454 kb on + strandat 216.484 kb on + strandat 216.485 kb on - strandat 216.487 kb on + strandat 216.487 kb on + strandat 216.504 kb on + strandat 216.505 kb on - strandat 216.505 kb on - strandat 216.507 kb on - strandat 216.519 kb on - strandat 216.544 kb on - strandat 216.545 kb on + strandat 216.546 kb on - strandat 216.547 kb on + strandat 216.547 kb on + strandat 216.547 kb on + strandat 216.548 kb on - strandat 216.550 kb on + strandat 216.550 kb on + strandat 216.555 kb on + strandat 216.556 kb on - strandat 216.561 kb on - strandat 216.565 kb on + strandat 216.566 kb on - strandat 216.566 kb on - strandat 216.566 kb on - strandat 216.623 kb on + strand, within BACOVA_00993at 216.625 kb on - strand, within BACOVA_00993at 216.700 kb on + strand, within BACOVA_00993at 216.700 kb on + strand, within BACOVA_00993at 216.701 kb on - strand, within BACOVA_00993at 216.701 kb on - strand, within BACOVA_00993at 216.864 kb on + strand, within BACOVA_00993at 217.162 kb on + strand, within BACOVA_00993at 217.163 kb on - strand, within BACOVA_00993at 217.204 kb on - strand, within BACOVA_00993at 217.204 kb on - strand, within BACOVA_00993at 217.251 kb on + strand, within BACOVA_00993at 217.252 kb on - strand, within BACOVA_00993at 217.260 kb on + strand, within BACOVA_00993at 217.260 kb on + strand, within BACOVA_00993at 217.302 kb on + strand, within BACOVA_00993at 217.302 kb on + strand, within BACOVA_00993at 217.302 kb on + strand, within BACOVA_00993at 217.303 kb on - strand, within BACOVA_00993at 217.303 kb on - strand, within BACOVA_00993at 217.303 kb on - strand, within BACOVA_00993at 217.365 kb on - strand, within BACOVA_00993at 217.369 kb on + strand, within BACOVA_00993at 217.393 kb on - strand, within BACOVA_00993at 217.433 kb on + strand, within BACOVA_00993at 217.433 kb on + strand, within BACOVA_00993at 217.433 kb on + strand, within BACOVA_00993at 217.434 kb on - strand, within BACOVA_00993at 217.434 kb on - strand, within BACOVA_00993at 217.435 kb on + strand, within BACOVA_00993

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Per-strain Table

Position Strand Gene LocusTag Fraction Dextran, Mw ~200,000 2.5 mg/ml (C)
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214,947 + BACOVA_00991 0.42 +0.6
214,948 - BACOVA_00991 0.42 -1.8
214,972 + BACOVA_00991 0.44 +1.8
215,181 - BACOVA_00991 0.58 +0.9
215,181 - BACOVA_00991 0.58 -2.5
215,241 - BACOVA_00991 0.62 -0.0
215,247 + BACOVA_00991 0.62 +0.1
215,280 + BACOVA_00991 0.64 +1.4
215,309 + BACOVA_00991 0.66 -0.4
215,312 - BACOVA_00991 0.67 -0.6
215,315 - BACOVA_00991 0.67 -0.5
215,331 + BACOVA_00991 0.68 -1.4
215,454 - BACOVA_00991 0.76 -3.3
215,609 + BACOVA_00991 0.86 +0.0
215,616 + BACOVA_00991 0.87 +0.9
215,617 - BACOVA_00991 0.87 +0.3
215,617 - BACOVA_00991 0.87 -0.2
215,637 + BACOVA_00991 0.88 -0.4
215,637 + BACOVA_00991 0.88 +0.2
215,638 - BACOVA_00991 0.88 +0.7
215,684 - +1.0
215,706 + -0.4
215,706 + +0.5
215,749 - -1.7
215,751 - -0.8
215,799 + -0.3
215,799 + -0.5
215,808 - +1.1
215,813 + -0.9
215,955 - BACOVA_00992 0.23 -3.3
215,994 - BACOVA_00992 0.29 -1.7
215,994 - BACOVA_00992 0.29 -0.2
216,059 - BACOVA_00992 0.40 -1.5
216,059 - BACOVA_00992 0.40 -0.7
216,182 + BACOVA_00992 0.59 -2.4
216,183 - BACOVA_00992 0.59 -1.3
216,212 + BACOVA_00992 0.64 +0.3
216,212 + BACOVA_00992 0.64 +0.7
216,214 + BACOVA_00992 0.64 -1.1
216,214 + BACOVA_00992 0.64 +0.3
216,270 - BACOVA_00992 0.73 +0.1
216,325 + BACOVA_00992 0.82 +0.5
216,364 + BACOVA_00992 0.88 +0.2
216,365 - BACOVA_00992 0.88 -1.5
216,398 + +1.3
216,399 - -0.8
216,403 + -2.8
216,408 - +0.5
216,408 - +0.5
216,454 + -0.7
216,454 + +1.2
216,484 + +0.7
216,485 - -2.3
216,487 + -0.9
216,487 + -1.3
216,504 + +3.2
216,505 - -2.5
216,505 - +0.2
216,507 - +0.2
216,519 - -1.4
216,544 - -1.1
216,545 + -0.8
216,546 - -0.9
216,547 + -0.1
216,547 + +0.1
216,547 + -0.5
216,548 - -3.5
216,550 + +1.2
216,550 + -1.0
216,555 + -1.6
216,556 - -0.9
216,561 - -1.8
216,565 + -0.1
216,566 - -1.4
216,566 - -0.4
216,566 - -0.4
216,623 + BACOVA_00993 0.11 -0.5
216,625 - BACOVA_00993 0.11 -0.4
216,700 + BACOVA_00993 0.17 -0.3
216,700 + BACOVA_00993 0.17 -1.8
216,701 - BACOVA_00993 0.17 -0.8
216,701 - BACOVA_00993 0.17 -0.4
216,864 + BACOVA_00993 0.30 -0.1
217,162 + BACOVA_00993 0.54 -0.5
217,163 - BACOVA_00993 0.54 -0.5
217,204 - BACOVA_00993 0.57 -1.7
217,204 - BACOVA_00993 0.57 +2.3
217,251 + BACOVA_00993 0.61 -0.2
217,252 - BACOVA_00993 0.61 -1.7
217,260 + BACOVA_00993 0.62 -1.6
217,260 + BACOVA_00993 0.62 -1.0
217,302 + BACOVA_00993 0.65 -1.8
217,302 + BACOVA_00993 0.65 +0.2
217,302 + BACOVA_00993 0.65 -0.8
217,303 - BACOVA_00993 0.65 +1.1
217,303 - BACOVA_00993 0.65 -2.7
217,303 - BACOVA_00993 0.65 -0.1
217,365 - BACOVA_00993 0.70 -0.8
217,369 + BACOVA_00993 0.70 -1.4
217,393 - BACOVA_00993 0.72 +0.1
217,433 + BACOVA_00993 0.76 -0.3
217,433 + BACOVA_00993 0.76 -0.7
217,433 + BACOVA_00993 0.76 -0.0
217,434 - BACOVA_00993 0.76 -1.1
217,434 - BACOVA_00993 0.76 -1.4
217,435 + BACOVA_00993 0.76 +1.7

Or see this region's nucleotide sequence