Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00670

Experiment: Dextran, Mw ~200,000 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00668 and BACOVA_00669 overlap by 20 nucleotidesBACOVA_00669 and BACOVA_00670 overlap by 4 nucleotidesBACOVA_00670 and BACOVA_00671 are separated by 58 nucleotides BACOVA_00668: BACOVA_00668 - hypothetical protein, at 29,949 to 30,278 _00668 BACOVA_00669: BACOVA_00669 - Sigma-70 region 2, at 30,259 to 30,810 _00669 BACOVA_00670: BACOVA_00670 - hypothetical protein, at 30,807 to 31,586 _00670 BACOVA_00671: BACOVA_00671 - NOL1/NOP2/sun family protein, at 31,645 to 33,159 _00671 Position (kb) 30 31 32Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 29.917 kb on + strandat 29.917 kb on + strandat 29.918 kb on - strandat 29.937 kb on + strandat 29.937 kb on + strandat 29.938 kb on - strandat 29.941 kb on + strandat 29.941 kb on + strandat 29.951 kb on - strandat 29.976 kb on - strandat 30.045 kb on - strand, within BACOVA_00668at 30.045 kb on - strand, within BACOVA_00668at 30.057 kb on - strand, within BACOVA_00668at 30.168 kb on - strand, within BACOVA_00668at 30.178 kb on - strand, within BACOVA_00668at 30.296 kb on + strandat 30.358 kb on + strand, within BACOVA_00669at 30.384 kb on + strand, within BACOVA_00669at 30.385 kb on - strand, within BACOVA_00669at 30.385 kb on - strand, within BACOVA_00669at 30.399 kb on - strand, within BACOVA_00669at 30.432 kb on + strand, within BACOVA_00669at 30.505 kb on + strand, within BACOVA_00669at 30.505 kb on + strand, within BACOVA_00669at 30.506 kb on - strand, within BACOVA_00669at 30.517 kb on - strand, within BACOVA_00669at 30.550 kb on - strand, within BACOVA_00669at 30.552 kb on - strand, within BACOVA_00669at 30.570 kb on - strand, within BACOVA_00669at 30.570 kb on - strand, within BACOVA_00669at 30.576 kb on + strand, within BACOVA_00669at 30.630 kb on + strand, within BACOVA_00669at 30.630 kb on + strand, within BACOVA_00669at 30.640 kb on - strand, within BACOVA_00669at 30.649 kb on - strand, within BACOVA_00669at 30.649 kb on - strand, within BACOVA_00669at 30.726 kb on - strand, within BACOVA_00669at 30.790 kb on + strandat 30.790 kb on + strandat 30.790 kb on + strandat 30.791 kb on - strandat 30.792 kb on + strandat 30.793 kb on - strandat 30.812 kb on + strandat 30.812 kb on + strandat 30.813 kb on - strandat 30.884 kb on + strandat 30.894 kb on - strand, within BACOVA_00670at 30.924 kb on - strand, within BACOVA_00670at 30.924 kb on - strand, within BACOVA_00670at 30.933 kb on - strand, within BACOVA_00670at 31.007 kb on + strand, within BACOVA_00670at 31.304 kb on + strand, within BACOVA_00670at 31.373 kb on + strand, within BACOVA_00670at 31.374 kb on - strand, within BACOVA_00670at 31.374 kb on - strand, within BACOVA_00670at 31.448 kb on + strand, within BACOVA_00670at 31.466 kb on + strand, within BACOVA_00670at 31.467 kb on - strand, within BACOVA_00670at 31.554 kb on + strandat 31.572 kb on + strandat 31.621 kb on - strandat 31.626 kb on + strandat 31.627 kb on - strandat 31.630 kb on + strandat 31.633 kb on + strandat 31.634 kb on - strandat 31.638 kb on + strandat 31.639 kb on - strandat 31.639 kb on - strandat 31.639 kb on - strandat 31.661 kb on + strandat 31.683 kb on + strandat 31.724 kb on - strandat 31.867 kb on + strand, within BACOVA_00671at 31.904 kb on + strand, within BACOVA_00671at 31.925 kb on - strand, within BACOVA_00671at 31.973 kb on - strand, within BACOVA_00671at 32.045 kb on + strand, within BACOVA_00671at 32.045 kb on + strand, within BACOVA_00671at 32.181 kb on - strand, within BACOVA_00671at 32.232 kb on + strand, within BACOVA_00671at 32.232 kb on + strand, within BACOVA_00671at 32.233 kb on - strand, within BACOVA_00671at 32.322 kb on + strand, within BACOVA_00671at 32.355 kb on + strand, within BACOVA_00671at 32.355 kb on + strand, within BACOVA_00671at 32.355 kb on + strand, within BACOVA_00671at 32.355 kb on + strand, within BACOVA_00671at 32.355 kb on + strand, within BACOVA_00671at 32.357 kb on + strand, within BACOVA_00671at 32.357 kb on + strand, within BACOVA_00671at 32.361 kb on + strand, within BACOVA_00671at 32.361 kb on + strand, within BACOVA_00671at 32.361 kb on + strand, within BACOVA_00671at 32.362 kb on - strand, within BACOVA_00671at 32.364 kb on + strand, within BACOVA_00671at 32.365 kb on - strand, within BACOVA_00671at 32.376 kb on + strand, within BACOVA_00671at 32.439 kb on - strand, within BACOVA_00671at 32.468 kb on + strand, within BACOVA_00671at 32.541 kb on + strand, within BACOVA_00671

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Per-strain Table

Position Strand Gene LocusTag Fraction Dextran, Mw ~200,000 2.5 mg/ml (C)
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29,917 + -2.1
29,917 + +1.7
29,918 - +0.7
29,937 + +0.8
29,937 + -0.8
29,938 - -0.4
29,941 + -0.2
29,941 + -0.6
29,951 - -0.7
29,976 - -0.3
30,045 - BACOVA_00668 0.29 -0.2
30,045 - BACOVA_00668 0.29 +1.4
30,057 - BACOVA_00668 0.33 +0.8
30,168 - BACOVA_00668 0.66 -1.5
30,178 - BACOVA_00668 0.69 -1.3
30,296 + -0.5
30,358 + BACOVA_00669 0.18 +2.8
30,384 + BACOVA_00669 0.23 +0.5
30,385 - BACOVA_00669 0.23 -0.4
30,385 - BACOVA_00669 0.23 +1.0
30,399 - BACOVA_00669 0.25 -0.4
30,432 + BACOVA_00669 0.31 +0.8
30,505 + BACOVA_00669 0.45 +0.7
30,505 + BACOVA_00669 0.45 -2.8
30,506 - BACOVA_00669 0.45 -0.0
30,517 - BACOVA_00669 0.47 +1.6
30,550 - BACOVA_00669 0.53 +0.7
30,552 - BACOVA_00669 0.53 -1.2
30,570 - BACOVA_00669 0.56 -2.5
30,570 - BACOVA_00669 0.56 -1.9
30,576 + BACOVA_00669 0.57 -1.7
30,630 + BACOVA_00669 0.67 -0.1
30,630 + BACOVA_00669 0.67 +1.6
30,640 - BACOVA_00669 0.69 -0.3
30,649 - BACOVA_00669 0.71 -0.3
30,649 - BACOVA_00669 0.71 -0.2
30,726 - BACOVA_00669 0.85 -0.0
30,790 + +0.3
30,790 + -0.7
30,790 + -0.1
30,791 - -1.2
30,792 + +1.8
30,793 - +1.6
30,812 + -1.5
30,812 + +0.3
30,813 - +0.6
30,884 + +1.3
30,894 - BACOVA_00670 0.11 +1.9
30,924 - BACOVA_00670 0.15 +0.5
30,924 - BACOVA_00670 0.15 -0.5
30,933 - BACOVA_00670 0.16 -0.0
31,007 + BACOVA_00670 0.26 -0.1
31,304 + BACOVA_00670 0.64 +5.1
31,373 + BACOVA_00670 0.73 -3.9
31,374 - BACOVA_00670 0.73 -0.7
31,374 - BACOVA_00670 0.73 +0.3
31,448 + BACOVA_00670 0.82 -1.4
31,466 + BACOVA_00670 0.84 +0.0
31,467 - BACOVA_00670 0.85 -1.0
31,554 + -1.2
31,572 + +0.2
31,621 - -0.1
31,626 + -0.3
31,627 - -0.7
31,630 + +0.7
31,633 + -0.5
31,634 - -0.3
31,638 + -2.5
31,639 - -0.3
31,639 - +0.1
31,639 - +1.3
31,661 + -1.9
31,683 + +0.7
31,724 - +0.3
31,867 + BACOVA_00671 0.15 +1.0
31,904 + BACOVA_00671 0.17 +0.7
31,925 - BACOVA_00671 0.18 +1.9
31,973 - BACOVA_00671 0.22 +0.6
32,045 + BACOVA_00671 0.26 -2.2
32,045 + BACOVA_00671 0.26 -1.3
32,181 - BACOVA_00671 0.35 -1.3
32,232 + BACOVA_00671 0.39 -0.7
32,232 + BACOVA_00671 0.39 +1.3
32,233 - BACOVA_00671 0.39 +0.3
32,322 + BACOVA_00671 0.45 +2.7
32,355 + BACOVA_00671 0.47 -0.7
32,355 + BACOVA_00671 0.47 +0.3
32,355 + BACOVA_00671 0.47 +1.3
32,355 + BACOVA_00671 0.47 +1.3
32,355 + BACOVA_00671 0.47 +1.1
32,357 + BACOVA_00671 0.47 +1.8
32,357 + BACOVA_00671 0.47 +1.6
32,361 + BACOVA_00671 0.47 +1.9
32,361 + BACOVA_00671 0.47 -0.1
32,361 + BACOVA_00671 0.47 +0.3
32,362 - BACOVA_00671 0.47 +0.3
32,364 + BACOVA_00671 0.47 +0.6
32,365 - BACOVA_00671 0.48 -0.1
32,376 + BACOVA_00671 0.48 +0.7
32,439 - BACOVA_00671 0.52 +2.7
32,468 + BACOVA_00671 0.54 +0.7
32,541 + BACOVA_00671 0.59 -1.7

Or see this region's nucleotide sequence