Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00581

Experiment: Dextran, Mw ~200,000 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00579 and BACOVA_00580 are separated by 152 nucleotidesBACOVA_00580 and BACOVA_00581 are separated by 137 nucleotidesBACOVA_00581 and BACOVA_00582 are separated by 126 nucleotides BACOVA_00579: BACOVA_00579 - VirE N-terminal domain protein, at 12,217 to 14,544 _00579 BACOVA_00580: BACOVA_00580 - hypothetical protein, at 14,697 to 15,056 _00580 BACOVA_00581: BACOVA_00581 - hypothetical protein, at 15,194 to 15,700 _00581 BACOVA_00582: BACOVA_00582 - hypothetical protein, at 15,827 to 18,085 _00582 Position (kb) 15 16Strain fitness (log2 ratio) -2 -1 0 1 2 3at 14.287 kb on - strand, within BACOVA_00579at 14.287 kb on - strand, within BACOVA_00579at 14.416 kb on - strandat 14.422 kb on + strandat 14.435 kb on + strandat 14.436 kb on - strandat 14.436 kb on - strandat 14.436 kb on - strandat 14.455 kb on - strandat 14.455 kb on - strandat 14.458 kb on - strandat 14.533 kb on + strandat 14.546 kb on + strandat 14.546 kb on + strandat 14.547 kb on - strandat 14.571 kb on + strandat 14.587 kb on - strandat 14.630 kb on + strandat 14.638 kb on + strandat 14.670 kb on - strandat 14.688 kb on + strandat 14.821 kb on + strand, within BACOVA_00580at 14.893 kb on - strand, within BACOVA_00580at 14.919 kb on - strand, within BACOVA_00580at 14.945 kb on - strand, within BACOVA_00580at 14.945 kb on - strand, within BACOVA_00580at 14.975 kb on + strand, within BACOVA_00580at 15.026 kb on - strandat 15.032 kb on - strandat 15.242 kb on + strandat 15.269 kb on - strand, within BACOVA_00581at 15.270 kb on + strand, within BACOVA_00581at 15.270 kb on + strand, within BACOVA_00581at 15.270 kb on + strand, within BACOVA_00581at 15.271 kb on - strand, within BACOVA_00581at 15.300 kb on + strand, within BACOVA_00581at 15.301 kb on - strand, within BACOVA_00581at 15.301 kb on - strand, within BACOVA_00581at 15.304 kb on + strand, within BACOVA_00581at 15.473 kb on - strand, within BACOVA_00581at 15.473 kb on - strand, within BACOVA_00581at 15.497 kb on + strand, within BACOVA_00581at 15.497 kb on + strand, within BACOVA_00581at 15.497 kb on + strand, within BACOVA_00581at 15.497 kb on + strand, within BACOVA_00581at 15.498 kb on - strand, within BACOVA_00581at 15.498 kb on - strand, within BACOVA_00581at 15.517 kb on + strand, within BACOVA_00581at 15.522 kb on + strand, within BACOVA_00581at 15.523 kb on - strand, within BACOVA_00581at 15.523 kb on - strand, within BACOVA_00581at 15.523 kb on - strand, within BACOVA_00581at 15.530 kb on - strand, within BACOVA_00581at 15.588 kb on + strand, within BACOVA_00581at 15.588 kb on + strand, within BACOVA_00581at 15.699 kb on - strandat 15.763 kb on - strandat 15.766 kb on - strandat 15.778 kb on - strandat 15.806 kb on + strandat 15.826 kb on + strandat 15.826 kb on + strandat 15.826 kb on + strandat 15.827 kb on - strandat 15.830 kb on + strandat 15.830 kb on + strandat 15.831 kb on - strandat 15.832 kb on + strandat 15.833 kb on - strandat 15.833 kb on - strandat 15.837 kb on + strandat 15.846 kb on + strandat 15.847 kb on - strandat 15.952 kb on - strandat 15.952 kb on - strandat 15.954 kb on + strandat 15.956 kb on + strandat 16.012 kb on + strandat 16.017 kb on + strandat 16.018 kb on - strandat 16.022 kb on - strandat 16.040 kb on + strandat 16.040 kb on + strandat 16.040 kb on + strandat 16.041 kb on - strandat 16.041 kb on - strandat 16.041 kb on - strandat 16.041 kb on - strandat 16.054 kb on + strand, within BACOVA_00582at 16.055 kb on - strand, within BACOVA_00582at 16.055 kb on - strand, within BACOVA_00582at 16.096 kb on + strand, within BACOVA_00582at 16.097 kb on - strand, within BACOVA_00582at 16.114 kb on + strand, within BACOVA_00582at 16.114 kb on + strand, within BACOVA_00582at 16.177 kb on + strand, within BACOVA_00582at 16.191 kb on + strand, within BACOVA_00582at 16.192 kb on - strand, within BACOVA_00582at 16.325 kb on - strand, within BACOVA_00582at 16.426 kb on + strand, within BACOVA_00582at 16.542 kb on + strand, within BACOVA_00582at 16.543 kb on - strand, within BACOVA_00582at 16.604 kb on - strand, within BACOVA_00582at 16.604 kb on - strand, within BACOVA_00582at 16.626 kb on + strand, within BACOVA_00582at 16.626 kb on + strand, within BACOVA_00582at 16.628 kb on + strand, within BACOVA_00582at 16.691 kb on + strand, within BACOVA_00582

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Per-strain Table

Position Strand Gene LocusTag Fraction Dextran, Mw ~200,000 2.5 mg/ml (C)
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14,287 - BACOVA_00579 0.89 -0.2
14,287 - BACOVA_00579 0.89 -0.2
14,416 - -1.7
14,422 + -1.2
14,435 + -0.6
14,436 - -0.3
14,436 - +1.4
14,436 - +1.4
14,455 - -0.2
14,455 - -1.5
14,458 - -1.2
14,533 + -1.2
14,546 + -0.2
14,546 + -0.6
14,547 - -1.6
14,571 + +1.0
14,587 - -0.4
14,630 + -2.4
14,638 + -0.4
14,670 - +0.2
14,688 + +1.0
14,821 + BACOVA_00580 0.34 -0.6
14,893 - BACOVA_00580 0.54 -0.3
14,919 - BACOVA_00580 0.62 +0.3
14,945 - BACOVA_00580 0.69 -0.9
14,945 - BACOVA_00580 0.69 +1.4
14,975 + BACOVA_00580 0.77 +0.2
15,026 - -0.2
15,032 - +0.1
15,242 + +1.4
15,269 - BACOVA_00581 0.15 +1.6
15,270 + BACOVA_00581 0.15 +2.4
15,270 + BACOVA_00581 0.15 -0.7
15,270 + BACOVA_00581 0.15 -1.0
15,271 - BACOVA_00581 0.15 +0.9
15,300 + BACOVA_00581 0.21 -0.2
15,301 - BACOVA_00581 0.21 -0.6
15,301 - BACOVA_00581 0.21 -0.0
15,304 + BACOVA_00581 0.22 -0.2
15,473 - BACOVA_00581 0.55 -1.2
15,473 - BACOVA_00581 0.55 +0.4
15,497 + BACOVA_00581 0.60 -0.2
15,497 + BACOVA_00581 0.60 +0.2
15,497 + BACOVA_00581 0.60 +0.4
15,497 + BACOVA_00581 0.60 +1.2
15,498 - BACOVA_00581 0.60 -0.7
15,498 - BACOVA_00581 0.60 -0.2
15,517 + BACOVA_00581 0.64 +0.0
15,522 + BACOVA_00581 0.65 +0.6
15,523 - BACOVA_00581 0.65 -0.3
15,523 - BACOVA_00581 0.65 +1.2
15,523 - BACOVA_00581 0.65 +1.3
15,530 - BACOVA_00581 0.66 +0.9
15,588 + BACOVA_00581 0.78 +0.0
15,588 + BACOVA_00581 0.78 +1.0
15,699 - +1.1
15,763 - -0.6
15,766 - +0.6
15,778 - -2.7
15,806 + -1.2
15,826 + +0.8
15,826 + +3.4
15,826 + +0.2
15,827 - -1.3
15,830 + -1.4
15,830 + +0.7
15,831 - +0.6
15,832 + -1.7
15,833 - +0.2
15,833 - +0.4
15,837 + +1.7
15,846 + -0.0
15,847 - +1.4
15,952 - +0.8
15,952 - +0.9
15,954 + +1.4
15,956 + +0.4
16,012 + +0.1
16,017 + +0.3
16,018 - +1.6
16,022 - +0.1
16,040 + +0.0
16,040 + -2.0
16,040 + +0.7
16,041 - -1.4
16,041 - -1.6
16,041 - -0.0
16,041 - -0.2
16,054 + BACOVA_00582 0.10 +1.0
16,055 - BACOVA_00582 0.10 -0.4
16,055 - BACOVA_00582 0.10 -0.1
16,096 + BACOVA_00582 0.12 +1.4
16,097 - BACOVA_00582 0.12 -0.9
16,114 + BACOVA_00582 0.13 -2.2
16,114 + BACOVA_00582 0.13 -0.2
16,177 + BACOVA_00582 0.15 +0.7
16,191 + BACOVA_00582 0.16 -0.3
16,192 - BACOVA_00582 0.16 -0.7
16,325 - BACOVA_00582 0.22 +2.0
16,426 + BACOVA_00582 0.27 +0.6
16,542 + BACOVA_00582 0.32 -1.7
16,543 - BACOVA_00582 0.32 +0.4
16,604 - BACOVA_00582 0.34 -0.2
16,604 - BACOVA_00582 0.34 +1.4
16,626 + BACOVA_00582 0.35 -0.5
16,626 + BACOVA_00582 0.35 +1.8
16,628 + BACOVA_00582 0.35 -0.6
16,691 + BACOVA_00582 0.38 -0.2

Or see this region's nucleotide sequence