Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05454

Experiment: Chondroitin sulfate A from bovine trachea 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05450 and BACOVA_05451 are separated by 79 nucleotidesBACOVA_05451 and BACOVA_05452 are separated by 25 nucleotidesBACOVA_05452 and BACOVA_05453 overlap by 101 nucleotidesBACOVA_05453 and BACOVA_05454 overlap by 21 nucleotidesBACOVA_05454 and BACOVA_05455 are separated by 84 nucleotidesBACOVA_05455 and BACOVA_05456 are separated by 149 nucleotides BACOVA_05450: BACOVA_05450 - conserved hypothetical protein TIGR00153, at 940,061 to 940,708 _05450 BACOVA_05451: BACOVA_05451 - SNARE-like domain protein, at 940,788 to 941,423 _05451 BACOVA_05452: BACOVA_05452 - hypothetical protein, at 941,449 to 941,580 _05452 BACOVA_05453: BACOVA_05453 - hypothetical protein, at 941,480 to 941,593 _05453 BACOVA_05454: BACOVA_05454 - hypothetical protein, at 941,573 to 942,004 _05454 BACOVA_05455: BACOVA_05455 - acetyltransferase, GNAT family, at 942,089 to 942,553 _05455 BACOVA_05456: BACOVA_05456 - hypothetical protein, at 942,703 to 943,962 _05456 Position (kb) 941 942 943Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 940.579 kb on + strand, within BACOVA_05450at 940.605 kb on - strand, within BACOVA_05450at 940.640 kb on + strand, within BACOVA_05450at 940.715 kb on - strandat 940.748 kb on - strandat 940.809 kb on + strandat 940.813 kb on - strandat 940.818 kb on + strandat 940.818 kb on + strandat 940.834 kb on - strandat 940.841 kb on + strandat 940.841 kb on + strandat 940.842 kb on - strandat 940.842 kb on - strandat 940.846 kb on - strandat 940.846 kb on - strandat 940.846 kb on - strandat 940.854 kb on + strand, within BACOVA_05451at 940.907 kb on - strand, within BACOVA_05451at 940.956 kb on - strand, within BACOVA_05451at 940.958 kb on - strand, within BACOVA_05451at 940.958 kb on - strand, within BACOVA_05451at 940.972 kb on + strand, within BACOVA_05451at 940.975 kb on + strand, within BACOVA_05451at 940.976 kb on - strand, within BACOVA_05451at 941.045 kb on + strand, within BACOVA_05451at 941.046 kb on - strand, within BACOVA_05451at 941.158 kb on - strand, within BACOVA_05451at 941.181 kb on + strand, within BACOVA_05451at 941.182 kb on - strand, within BACOVA_05451at 941.200 kb on - strand, within BACOVA_05451at 941.205 kb on - strand, within BACOVA_05451at 941.214 kb on + strand, within BACOVA_05451at 941.214 kb on + strand, within BACOVA_05451at 941.215 kb on - strand, within BACOVA_05451at 941.216 kb on + strand, within BACOVA_05451at 941.216 kb on + strand, within BACOVA_05451at 941.217 kb on - strand, within BACOVA_05451at 941.217 kb on - strand, within BACOVA_05451at 941.359 kb on + strand, within BACOVA_05451at 941.359 kb on + strand, within BACOVA_05451at 941.359 kb on + strand, within BACOVA_05451at 941.383 kb on + strandat 941.384 kb on - strandat 941.384 kb on - strandat 941.384 kb on - strandat 941.427 kb on - strandat 941.440 kb on - strandat 941.462 kb on - strandat 941.463 kb on + strand, within BACOVA_05452at 941.478 kb on + strand, within BACOVA_05452at 941.479 kb on - strand, within BACOVA_05452at 941.549 kb on - strandat 941.549 kb on - strandat 941.566 kb on - strandat 941.566 kb on - strandat 941.599 kb on - strandat 941.599 kb on - strandat 941.602 kb on + strandat 941.602 kb on + strandat 941.603 kb on - strandat 941.607 kb on + strandat 941.607 kb on + strandat 941.607 kb on + strandat 941.608 kb on - strandat 941.623 kb on + strand, within BACOVA_05454at 941.638 kb on - strand, within BACOVA_05454at 941.640 kb on + strand, within BACOVA_05454at 941.665 kb on + strand, within BACOVA_05454at 941.690 kb on + strand, within BACOVA_05454at 941.690 kb on + strand, within BACOVA_05454at 941.690 kb on + strand, within BACOVA_05454at 941.691 kb on - strand, within BACOVA_05454at 941.691 kb on - strand, within BACOVA_05454at 941.716 kb on + strand, within BACOVA_05454at 941.726 kb on + strand, within BACOVA_05454at 941.726 kb on + strand, within BACOVA_05454at 941.786 kb on - strand, within BACOVA_05454at 941.790 kb on + strand, within BACOVA_05454at 941.850 kb on - strand, within BACOVA_05454at 941.850 kb on - strand, within BACOVA_05454at 941.851 kb on + strand, within BACOVA_05454at 941.851 kb on + strand, within BACOVA_05454at 941.863 kb on + strand, within BACOVA_05454at 941.870 kb on - strand, within BACOVA_05454at 941.871 kb on + strand, within BACOVA_05454at 941.872 kb on - strand, within BACOVA_05454at 941.872 kb on - strand, within BACOVA_05454at 941.872 kb on - strand, within BACOVA_05454at 941.878 kb on - strand, within BACOVA_05454at 941.883 kb on + strand, within BACOVA_05454at 941.884 kb on - strand, within BACOVA_05454at 941.979 kb on - strandat 941.983 kb on + strandat 941.994 kb on + strandat 942.042 kb on - strandat 942.046 kb on - strandat 942.068 kb on + strandat 942.069 kb on - strandat 942.070 kb on + strandat 942.070 kb on + strandat 942.128 kb on - strandat 942.128 kb on - strandat 942.130 kb on - strandat 942.130 kb on - strandat 942.145 kb on + strand, within BACOVA_05455at 942.196 kb on + strand, within BACOVA_05455at 942.201 kb on + strand, within BACOVA_05455at 942.202 kb on - strand, within BACOVA_05455at 942.202 kb on - strand, within BACOVA_05455at 942.202 kb on - strand, within BACOVA_05455at 942.202 kb on - strand, within BACOVA_05455at 942.202 kb on - strand, within BACOVA_05455at 942.314 kb on + strand, within BACOVA_05455at 942.410 kb on - strand, within BACOVA_05455at 942.410 kb on - strand, within BACOVA_05455at 942.470 kb on + strand, within BACOVA_05455at 942.471 kb on - strand, within BACOVA_05455at 942.471 kb on - strand, within BACOVA_05455at 942.472 kb on + strand, within BACOVA_05455at 942.475 kb on - strand, within BACOVA_05455at 942.477 kb on - strand, within BACOVA_05455at 942.489 kb on - strand, within BACOVA_05455at 942.555 kb on - strandat 942.555 kb on - strandat 942.572 kb on - strandat 942.578 kb on - strandat 942.588 kb on + strandat 942.588 kb on + strandat 942.589 kb on - strandat 942.589 kb on - strandat 942.591 kb on - strandat 942.640 kb on - strandat 942.661 kb on - strandat 942.662 kb on + strandat 942.667 kb on - strandat 942.679 kb on + strandat 942.684 kb on - strandat 942.703 kb on - strandat 942.813 kb on + strandat 942.835 kb on - strand, within BACOVA_05456at 942.854 kb on + strand, within BACOVA_05456at 942.855 kb on - strand, within BACOVA_05456at 942.861 kb on - strand, within BACOVA_05456at 942.876 kb on + strand, within BACOVA_05456at 942.876 kb on + strand, within BACOVA_05456at 942.877 kb on - strand, within BACOVA_05456at 942.966 kb on - strand, within BACOVA_05456at 942.966 kb on - strand, within BACOVA_05456at 942.966 kb on - strand, within BACOVA_05456at 942.966 kb on - strand, within BACOVA_05456at 942.978 kb on + strand, within BACOVA_05456at 942.984 kb on + strand, within BACOVA_05456at 942.984 kb on + strand, within BACOVA_05456

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Per-strain Table

Position Strand Gene LocusTag Fraction Chondroitin sulfate A from bovine trachea 2.5 mg/ml (C)
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940,579 + BACOVA_05450 0.80 +0.7
940,605 - BACOVA_05450 0.84 -0.7
940,640 + BACOVA_05450 0.89 -0.1
940,715 - -1.5
940,748 - -1.1
940,809 + -0.8
940,813 - +0.3
940,818 + +0.9
940,818 + -0.6
940,834 - -0.6
940,841 + -1.3
940,841 + +1.0
940,842 - -0.8
940,842 - -1.8
940,846 - -0.8
940,846 - -0.3
940,846 - -0.9
940,854 + BACOVA_05451 0.10 -0.8
940,907 - BACOVA_05451 0.19 -0.4
940,956 - BACOVA_05451 0.26 -0.0
940,958 - BACOVA_05451 0.27 -0.6
940,958 - BACOVA_05451 0.27 -2.7
940,972 + BACOVA_05451 0.29 -0.0
940,975 + BACOVA_05451 0.29 -1.3
940,976 - BACOVA_05451 0.30 -0.6
941,045 + BACOVA_05451 0.40 +0.5
941,046 - BACOVA_05451 0.41 -0.4
941,158 - BACOVA_05451 0.58 -0.2
941,181 + BACOVA_05451 0.62 -1.6
941,182 - BACOVA_05451 0.62 -0.4
941,200 - BACOVA_05451 0.65 -0.2
941,205 - BACOVA_05451 0.66 -1.3
941,214 + BACOVA_05451 0.67 +2.3
941,214 + BACOVA_05451 0.67 +0.2
941,215 - BACOVA_05451 0.67 -1.0
941,216 + BACOVA_05451 0.67 -1.0
941,216 + BACOVA_05451 0.67 +1.0
941,217 - BACOVA_05451 0.67 -0.5
941,217 - BACOVA_05451 0.67 -0.7
941,359 + BACOVA_05451 0.90 +1.0
941,359 + BACOVA_05451 0.90 +1.6
941,359 + BACOVA_05451 0.90 -0.1
941,383 + -0.8
941,384 - -0.8
941,384 - -0.7
941,384 - +0.6
941,427 - +0.5
941,440 - -2.2
941,462 - -0.6
941,463 + BACOVA_05452 0.11 +0.4
941,478 + BACOVA_05452 0.22 +0.4
941,479 - BACOVA_05452 0.23 -1.6
941,549 - -0.7
941,549 - -1.7
941,566 - -2.4
941,566 - -0.6
941,599 - +0.2
941,599 - +0.7
941,602 + +0.1
941,602 + -0.6
941,603 - -1.0
941,607 + +0.3
941,607 + -1.3
941,607 + -0.4
941,608 - -1.8
941,623 + BACOVA_05454 0.12 -1.1
941,638 - BACOVA_05454 0.15 +0.2
941,640 + BACOVA_05454 0.16 +0.7
941,665 + BACOVA_05454 0.21 -0.4
941,690 + BACOVA_05454 0.27 +0.7
941,690 + BACOVA_05454 0.27 -1.3
941,690 + BACOVA_05454 0.27 -0.5
941,691 - BACOVA_05454 0.27 -0.0
941,691 - BACOVA_05454 0.27 -0.6
941,716 + BACOVA_05454 0.33 -1.3
941,726 + BACOVA_05454 0.35 -2.3
941,726 + BACOVA_05454 0.35 -0.3
941,786 - BACOVA_05454 0.49 -0.1
941,790 + BACOVA_05454 0.50 +0.1
941,850 - BACOVA_05454 0.64 +0.6
941,850 - BACOVA_05454 0.64 -1.6
941,851 + BACOVA_05454 0.64 +0.1
941,851 + BACOVA_05454 0.64 +1.3
941,863 + BACOVA_05454 0.67 -0.9
941,870 - BACOVA_05454 0.69 -0.3
941,871 + BACOVA_05454 0.69 -1.0
941,872 - BACOVA_05454 0.69 +0.2
941,872 - BACOVA_05454 0.69 -2.2
941,872 - BACOVA_05454 0.69 +1.8
941,878 - BACOVA_05454 0.71 +0.4
941,883 + BACOVA_05454 0.72 -0.2
941,884 - BACOVA_05454 0.72 -0.3
941,979 - +0.1
941,983 + +0.2
941,994 + -0.0
942,042 - +0.0
942,046 - -0.5
942,068 + -1.4
942,069 - +0.7
942,070 + -0.7
942,070 + -2.0
942,128 - +0.8
942,128 - -0.5
942,130 - -0.3
942,130 - +1.1
942,145 + BACOVA_05455 0.12 +0.7
942,196 + BACOVA_05455 0.23 -0.6
942,201 + BACOVA_05455 0.24 +1.0
942,202 - BACOVA_05455 0.24 +0.7
942,202 - BACOVA_05455 0.24 -0.2
942,202 - BACOVA_05455 0.24 +0.3
942,202 - BACOVA_05455 0.24 -0.7
942,202 - BACOVA_05455 0.24 -0.2
942,314 + BACOVA_05455 0.48 +0.3
942,410 - BACOVA_05455 0.69 +0.3
942,410 - BACOVA_05455 0.69 +1.0
942,470 + BACOVA_05455 0.82 -1.3
942,471 - BACOVA_05455 0.82 +2.0
942,471 - BACOVA_05455 0.82 -2.3
942,472 + BACOVA_05455 0.82 +1.4
942,475 - BACOVA_05455 0.83 +0.0
942,477 - BACOVA_05455 0.83 -1.5
942,489 - BACOVA_05455 0.86 +0.1
942,555 - +0.3
942,555 - +1.6
942,572 - -1.3
942,578 - -1.8
942,588 + -0.4
942,588 + -0.2
942,589 - -1.0
942,589 - +1.0
942,591 - -3.5
942,640 - +0.2
942,661 - -0.2
942,662 + -0.5
942,667 - +0.2
942,679 + -1.6
942,684 - -0.6
942,703 - +1.0
942,813 + -0.8
942,835 - BACOVA_05456 0.10 -0.1
942,854 + BACOVA_05456 0.12 -0.5
942,855 - BACOVA_05456 0.12 +0.6
942,861 - BACOVA_05456 0.13 +0.4
942,876 + BACOVA_05456 0.14 +1.0
942,876 + BACOVA_05456 0.14 -0.2
942,877 - BACOVA_05456 0.14 -1.6
942,966 - BACOVA_05456 0.21 +0.6
942,966 - BACOVA_05456 0.21 +0.2
942,966 - BACOVA_05456 0.21 -0.1
942,966 - BACOVA_05456 0.21 -0.5
942,978 + BACOVA_05456 0.22 -0.8
942,984 + BACOVA_05456 0.22 +1.0
942,984 + BACOVA_05456 0.22 -0.8

Or see this region's nucleotide sequence