Experiment: Chondroitin sulfate A from bovine trachea 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04252 and BACOVA_04253 are separated by 8 nucleotides BACOVA_04253 and BACOVA_04254 are separated by 220 nucleotides
BACOVA_04252: BACOVA_04252 - hypothetical protein, at 132,772 to 134,331
_04252
BACOVA_04253: BACOVA_04253 - TonB-linked outer membrane protein, SusC/RagA family, at 134,340 to 137,477
_04253
BACOVA_04254: BACOVA_04254 - alcohol dehydrogenase, iron-dependent, at 137,698 to 138,870
_04254
Position (kb) 134
135
136
137
138 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 133.457 kb on + strand, within BACOVA_04252 at 133.458 kb on - strand, within BACOVA_04252 at 133.509 kb on - strand, within BACOVA_04252 at 133.547 kb on + strand, within BACOVA_04252 at 133.548 kb on - strand, within BACOVA_04252 at 133.588 kb on - strand, within BACOVA_04252 at 133.594 kb on + strand, within BACOVA_04252 at 133.597 kb on - strand, within BACOVA_04252 at 133.598 kb on + strand, within BACOVA_04252 at 133.598 kb on + strand, within BACOVA_04252 at 133.599 kb on - strand, within BACOVA_04252 at 133.642 kb on - strand, within BACOVA_04252 at 133.649 kb on + strand, within BACOVA_04252 at 133.650 kb on - strand, within BACOVA_04252 at 133.665 kb on - strand, within BACOVA_04252 at 133.746 kb on + strand, within BACOVA_04252 at 133.771 kb on + strand, within BACOVA_04252 at 133.809 kb on - strand, within BACOVA_04252 at 133.992 kb on + strand, within BACOVA_04252 at 134.046 kb on - strand, within BACOVA_04252 at 134.049 kb on + strand, within BACOVA_04252 at 134.070 kb on - strand, within BACOVA_04252 at 134.102 kb on + strand, within BACOVA_04252 at 134.102 kb on + strand, within BACOVA_04252 at 134.102 kb on + strand, within BACOVA_04252 at 134.136 kb on + strand, within BACOVA_04252 at 134.137 kb on - strand, within BACOVA_04252 at 134.178 kb on - strand at 134.178 kb on - strand at 134.255 kb on - strand at 134.284 kb on + strand at 134.302 kb on + strand at 134.303 kb on - strand at 134.308 kb on + strand at 134.308 kb on + strand at 134.308 kb on + strand at 134.308 kb on + strand at 134.309 kb on - strand at 134.310 kb on + strand at 134.341 kb on + strand at 134.341 kb on + strand at 134.346 kb on + strand at 134.347 kb on - strand at 134.354 kb on + strand at 134.354 kb on + strand at 134.354 kb on + strand at 134.355 kb on - strand at 134.355 kb on - strand at 134.380 kb on + strand at 134.380 kb on + strand at 134.414 kb on + strand at 134.414 kb on + strand at 134.415 kb on - strand at 134.469 kb on + strand at 134.470 kb on - strand at 134.576 kb on + strand at 134.605 kb on - strand at 134.645 kb on + strand at 134.645 kb on + strand at 134.679 kb on + strand, within BACOVA_04253 at 134.705 kb on - strand, within BACOVA_04253 at 134.835 kb on + strand, within BACOVA_04253 at 134.835 kb on + strand, within BACOVA_04253 at 134.835 kb on + strand, within BACOVA_04253 at 134.836 kb on - strand, within BACOVA_04253 at 134.915 kb on - strand, within BACOVA_04253 at 134.941 kb on + strand, within BACOVA_04253 at 134.942 kb on - strand, within BACOVA_04253 at 134.953 kb on + strand, within BACOVA_04253 at 134.995 kb on + strand, within BACOVA_04253 at 134.995 kb on + strand, within BACOVA_04253 at 135.024 kb on - strand, within BACOVA_04253 at 135.028 kb on + strand, within BACOVA_04253 at 135.029 kb on - strand, within BACOVA_04253 at 135.062 kb on + strand, within BACOVA_04253 at 135.118 kb on + strand, within BACOVA_04253 at 135.181 kb on + strand, within BACOVA_04253 at 135.273 kb on - strand, within BACOVA_04253 at 135.314 kb on - strand, within BACOVA_04253 at 135.360 kb on + strand, within BACOVA_04253 at 135.361 kb on - strand, within BACOVA_04253 at 135.361 kb on - strand, within BACOVA_04253 at 135.403 kb on + strand, within BACOVA_04253 at 135.403 kb on + strand, within BACOVA_04253 at 135.404 kb on - strand, within BACOVA_04253 at 135.404 kb on - strand, within BACOVA_04253 at 135.407 kb on + strand, within BACOVA_04253 at 135.407 kb on + strand, within BACOVA_04253 at 135.508 kb on + strand, within BACOVA_04253 at 135.544 kb on - strand, within BACOVA_04253 at 135.614 kb on - strand, within BACOVA_04253 at 135.617 kb on + strand, within BACOVA_04253 at 135.617 kb on + strand, within BACOVA_04253 at 135.618 kb on - strand, within BACOVA_04253 at 135.623 kb on + strand, within BACOVA_04253 at 135.626 kb on - strand, within BACOVA_04253 at 135.630 kb on - strand, within BACOVA_04253 at 135.669 kb on - strand, within BACOVA_04253 at 135.788 kb on + strand, within BACOVA_04253 at 135.828 kb on - strand, within BACOVA_04253 at 135.835 kb on + strand, within BACOVA_04253 at 135.835 kb on + strand, within BACOVA_04253 at 135.912 kb on - strand, within BACOVA_04253 at 135.923 kb on - strand, within BACOVA_04253 at 135.948 kb on + strand, within BACOVA_04253 at 136.028 kb on + strand, within BACOVA_04253 at 136.052 kb on - strand, within BACOVA_04253 at 136.109 kb on + strand, within BACOVA_04253 at 136.110 kb on - strand, within BACOVA_04253 at 136.148 kb on - strand, within BACOVA_04253 at 136.166 kb on - strand, within BACOVA_04253 at 136.176 kb on - strand, within BACOVA_04253 at 136.178 kb on - strand, within BACOVA_04253 at 136.185 kb on + strand, within BACOVA_04253 at 136.238 kb on - strand, within BACOVA_04253 at 136.238 kb on - strand, within BACOVA_04253 at 136.241 kb on + strand, within BACOVA_04253 at 136.242 kb on - strand, within BACOVA_04253 at 136.243 kb on + strand, within BACOVA_04253 at 136.244 kb on - strand, within BACOVA_04253 at 136.266 kb on + strand, within BACOVA_04253 at 136.267 kb on - strand, within BACOVA_04253 at 136.282 kb on + strand, within BACOVA_04253 at 136.450 kb on + strand, within BACOVA_04253 at 136.454 kb on + strand, within BACOVA_04253 at 136.470 kb on + strand, within BACOVA_04253 at 136.471 kb on - strand, within BACOVA_04253 at 136.526 kb on + strand, within BACOVA_04253 at 136.527 kb on - strand, within BACOVA_04253 at 136.534 kb on + strand, within BACOVA_04253 at 136.536 kb on + strand, within BACOVA_04253 at 136.537 kb on - strand, within BACOVA_04253 at 136.588 kb on + strand, within BACOVA_04253 at 136.588 kb on + strand, within BACOVA_04253 at 136.588 kb on + strand, within BACOVA_04253 at 136.596 kb on + strand, within BACOVA_04253 at 136.635 kb on + strand, within BACOVA_04253 at 136.635 kb on + strand, within BACOVA_04253 at 136.635 kb on + strand, within BACOVA_04253 at 136.705 kb on + strand, within BACOVA_04253 at 136.706 kb on - strand, within BACOVA_04253 at 136.706 kb on - strand, within BACOVA_04253 at 136.736 kb on + strand, within BACOVA_04253 at 136.737 kb on - strand, within BACOVA_04253 at 136.863 kb on - strand, within BACOVA_04253 at 136.991 kb on + strand, within BACOVA_04253 at 137.009 kb on + strand, within BACOVA_04253 at 137.010 kb on - strand, within BACOVA_04253 at 137.076 kb on + strand, within BACOVA_04253 at 137.127 kb on + strand, within BACOVA_04253 at 137.128 kb on - strand, within BACOVA_04253 at 137.128 kb on - strand, within BACOVA_04253 at 137.133 kb on + strand, within BACOVA_04253 at 137.136 kb on + strand, within BACOVA_04253 at 137.137 kb on - strand, within BACOVA_04253 at 137.191 kb on + strand at 137.191 kb on + strand at 137.192 kb on - strand at 137.197 kb on + strand at 137.197 kb on + strand at 137.250 kb on - strand at 137.299 kb on - strand at 137.368 kb on + strand at 137.368 kb on + strand at 137.369 kb on - strand at 137.411 kb on + strand at 137.412 kb on - strand at 137.415 kb on + strand at 137.427 kb on - strand at 137.427 kb on - strand at 137.431 kb on - strand at 137.436 kb on + strand at 137.477 kb on + strand at 137.485 kb on - strand at 137.486 kb on + strand at 137.486 kb on + strand at 137.489 kb on - strand at 137.498 kb on - strand at 137.524 kb on + strand at 137.524 kb on + strand at 137.525 kb on - strand at 137.563 kb on + strand at 137.563 kb on + strand at 137.564 kb on - strand at 137.615 kb on + strand at 137.616 kb on - strand at 137.647 kb on + strand at 137.654 kb on + strand at 137.685 kb on - strand at 137.687 kb on - strand at 137.725 kb on - strand at 137.727 kb on + strand at 137.750 kb on + strand at 137.751 kb on - strand at 137.751 kb on - strand at 137.773 kb on - strand at 137.838 kb on + strand, within BACOVA_04254 at 137.838 kb on + strand, within BACOVA_04254 at 137.859 kb on + strand, within BACOVA_04254 at 137.958 kb on + strand, within BACOVA_04254 at 137.959 kb on - strand, within BACOVA_04254 at 137.959 kb on - strand, within BACOVA_04254 at 137.959 kb on - strand, within BACOVA_04254 at 137.959 kb on - strand, within BACOVA_04254 at 138.003 kb on + strand, within BACOVA_04254 at 138.028 kb on + strand, within BACOVA_04254 at 138.029 kb on - strand, within BACOVA_04254 at 138.029 kb on - strand, within BACOVA_04254 at 138.207 kb on + strand, within BACOVA_04254 at 138.236 kb on - strand, within BACOVA_04254 at 138.323 kb on + strand, within BACOVA_04254 at 138.385 kb on + strand, within BACOVA_04254 at 138.416 kb on - strand, within BACOVA_04254
Per-strain Table
Position Strand Gene LocusTag Fraction Chondroitin sulfate A from bovine trachea 2.5 mg/ml (C) remove 133,457 + BACOVA_04252 0.44 -0.1 133,458 - BACOVA_04252 0.44 -2.2 133,509 - BACOVA_04252 0.47 +0.5 133,547 + BACOVA_04252 0.50 +0.3 133,548 - BACOVA_04252 0.50 +1.0 133,588 - BACOVA_04252 0.52 -0.6 133,594 + BACOVA_04252 0.53 -0.4 133,597 - BACOVA_04252 0.53 -1.0 133,598 + BACOVA_04252 0.53 -0.3 133,598 + BACOVA_04252 0.53 -2.0 133,599 - BACOVA_04252 0.53 +1.0 133,642 - BACOVA_04252 0.56 +0.0 133,649 + BACOVA_04252 0.56 -0.2 133,650 - BACOVA_04252 0.56 +1.0 133,665 - BACOVA_04252 0.57 +0.2 133,746 + BACOVA_04252 0.62 +0.7 133,771 + BACOVA_04252 0.64 +0.4 133,809 - BACOVA_04252 0.66 -0.5 133,992 + BACOVA_04252 0.78 +0.3 134,046 - BACOVA_04252 0.82 +0.5 134,049 + BACOVA_04252 0.82 -0.4 134,070 - BACOVA_04252 0.83 -0.6 134,102 + BACOVA_04252 0.85 -0.9 134,102 + BACOVA_04252 0.85 +0.7 134,102 + BACOVA_04252 0.85 -0.4 134,136 + BACOVA_04252 0.87 -0.1 134,137 - BACOVA_04252 0.88 +0.5 134,178 - +1.5 134,178 - +2.3 134,255 - +1.0 134,284 + +1.5 134,302 + -1.0 134,303 - +1.1 134,308 + -0.4 134,308 + -1.2 134,308 + +0.8 134,308 + -0.2 134,309 - +0.3 134,310 + +0.5 134,341 + +1.0 134,341 + -0.0 134,346 + +0.1 134,347 - -0.3 134,354 + +1.4 134,354 + +1.0 134,354 + -0.5 134,355 - +0.4 134,355 - +0.8 134,380 + -0.4 134,380 + +0.9 134,414 + +0.5 134,414 + +1.0 134,415 - -0.9 134,469 + -1.0 134,470 - -1.3 134,576 + -0.1 134,605 - -0.6 134,645 + -0.4 134,645 + -0.3 134,679 + BACOVA_04253 0.11 +0.0 134,705 - BACOVA_04253 0.12 +0.8 134,835 + BACOVA_04253 0.16 +0.1 134,835 + BACOVA_04253 0.16 -0.7 134,835 + BACOVA_04253 0.16 -0.6 134,836 - BACOVA_04253 0.16 +0.5 134,915 - BACOVA_04253 0.18 -0.9 134,941 + BACOVA_04253 0.19 -0.3 134,942 - BACOVA_04253 0.19 -1.3 134,953 + BACOVA_04253 0.20 +0.3 134,995 + BACOVA_04253 0.21 +2.0 134,995 + BACOVA_04253 0.21 +0.3 135,024 - BACOVA_04253 0.22 +0.1 135,028 + BACOVA_04253 0.22 -1.7 135,029 - BACOVA_04253 0.22 +1.6 135,062 + BACOVA_04253 0.23 -1.8 135,118 + BACOVA_04253 0.25 -0.2 135,181 + BACOVA_04253 0.27 +0.7 135,273 - BACOVA_04253 0.30 +0.7 135,314 - BACOVA_04253 0.31 +0.4 135,360 + BACOVA_04253 0.33 -0.8 135,361 - BACOVA_04253 0.33 +1.6 135,361 - BACOVA_04253 0.33 +0.3 135,403 + BACOVA_04253 0.34 -0.8 135,403 + BACOVA_04253 0.34 +0.6 135,404 - BACOVA_04253 0.34 -1.0 135,404 - BACOVA_04253 0.34 +0.9 135,407 + BACOVA_04253 0.34 -0.2 135,407 + BACOVA_04253 0.34 -1.9 135,508 + BACOVA_04253 0.37 +0.6 135,544 - BACOVA_04253 0.38 -1.5 135,614 - BACOVA_04253 0.41 +0.0 135,617 + BACOVA_04253 0.41 -0.0 135,617 + BACOVA_04253 0.41 -0.1 135,618 - BACOVA_04253 0.41 +0.4 135,623 + BACOVA_04253 0.41 -0.3 135,626 - BACOVA_04253 0.41 -0.6 135,630 - BACOVA_04253 0.41 +0.0 135,669 - BACOVA_04253 0.42 -0.3 135,788 + BACOVA_04253 0.46 -0.5 135,828 - BACOVA_04253 0.47 -0.1 135,835 + BACOVA_04253 0.48 -1.4 135,835 + BACOVA_04253 0.48 +1.3 135,912 - BACOVA_04253 0.50 -0.5 135,923 - BACOVA_04253 0.50 -0.8 135,948 + BACOVA_04253 0.51 +0.3 136,028 + BACOVA_04253 0.54 +0.0 136,052 - BACOVA_04253 0.55 +0.4 136,109 + BACOVA_04253 0.56 -0.0 136,110 - BACOVA_04253 0.56 -0.2 136,148 - BACOVA_04253 0.58 +1.3 136,166 - BACOVA_04253 0.58 -0.4 136,176 - BACOVA_04253 0.59 -0.4 136,178 - BACOVA_04253 0.59 +0.2 136,185 + BACOVA_04253 0.59 +0.4 136,238 - BACOVA_04253 0.60 +0.8 136,238 - BACOVA_04253 0.60 -1.6 136,241 + BACOVA_04253 0.61 -0.6 136,242 - BACOVA_04253 0.61 -0.6 136,243 + BACOVA_04253 0.61 -0.4 136,244 - BACOVA_04253 0.61 +0.1 136,266 + BACOVA_04253 0.61 -0.6 136,267 - BACOVA_04253 0.61 -0.6 136,282 + BACOVA_04253 0.62 +0.2 136,450 + BACOVA_04253 0.67 -1.3 136,454 + BACOVA_04253 0.67 +0.0 136,470 + BACOVA_04253 0.68 +3.3 136,471 - BACOVA_04253 0.68 +0.4 136,526 + BACOVA_04253 0.70 -0.8 136,527 - BACOVA_04253 0.70 +2.0 136,534 + BACOVA_04253 0.70 +1.1 136,536 + BACOVA_04253 0.70 -0.3 136,537 - BACOVA_04253 0.70 -0.2 136,588 + BACOVA_04253 0.72 -0.3 136,588 + BACOVA_04253 0.72 +0.0 136,588 + BACOVA_04253 0.72 -1.0 136,596 + BACOVA_04253 0.72 +0.9 136,635 + BACOVA_04253 0.73 -0.2 136,635 + BACOVA_04253 0.73 +0.5 136,635 + BACOVA_04253 0.73 +0.8 136,705 + BACOVA_04253 0.75 +0.3 136,706 - BACOVA_04253 0.75 +2.8 136,706 - BACOVA_04253 0.75 +0.0 136,736 + BACOVA_04253 0.76 -0.2 136,737 - BACOVA_04253 0.76 +0.5 136,863 - BACOVA_04253 0.80 -0.2 136,991 + BACOVA_04253 0.84 -0.9 137,009 + BACOVA_04253 0.85 +1.0 137,010 - BACOVA_04253 0.85 -0.1 137,076 + BACOVA_04253 0.87 +1.3 137,127 + BACOVA_04253 0.89 -0.6 137,128 - BACOVA_04253 0.89 +0.9 137,128 - BACOVA_04253 0.89 -1.0 137,133 + BACOVA_04253 0.89 -0.2 137,136 + BACOVA_04253 0.89 +0.3 137,137 - BACOVA_04253 0.89 -1.7 137,191 + +0.6 137,191 + +0.0 137,192 - -1.6 137,197 + -1.6 137,197 + +0.2 137,250 - +0.8 137,299 - +0.6 137,368 + +0.2 137,368 + +0.7 137,369 - -1.3 137,411 + +0.0 137,412 - +0.5 137,415 + -0.7 137,427 - +0.4 137,427 - -1.3 137,431 - +1.1 137,436 + -0.9 137,477 + -0.0 137,485 - +2.1 137,486 + -0.3 137,486 + +0.7 137,489 - +0.6 137,498 - -0.1 137,524 + +0.3 137,524 + -0.2 137,525 - -2.6 137,563 + +0.9 137,563 + -0.3 137,564 - -0.3 137,615 + -0.8 137,616 - -0.6 137,647 + +0.2 137,654 + -0.6 137,685 - +0.0 137,687 - +3.3 137,725 - +0.3 137,727 + +0.5 137,750 + -0.3 137,751 - +0.1 137,751 - -1.3 137,773 - +0.9 137,838 + BACOVA_04254 0.12 +0.5 137,838 + BACOVA_04254 0.12 +0.3 137,859 + BACOVA_04254 0.14 -1.5 137,958 + BACOVA_04254 0.22 -1.6 137,959 - BACOVA_04254 0.22 -0.7 137,959 - BACOVA_04254 0.22 +0.4 137,959 - BACOVA_04254 0.22 +0.1 137,959 - BACOVA_04254 0.22 +1.0 138,003 + BACOVA_04254 0.26 -0.8 138,028 + BACOVA_04254 0.28 +1.1 138,029 - BACOVA_04254 0.28 -1.0 138,029 - BACOVA_04254 0.28 +0.5 138,207 + BACOVA_04254 0.43 -1.3 138,236 - BACOVA_04254 0.46 -0.7 138,323 + BACOVA_04254 0.53 +0.4 138,385 + BACOVA_04254 0.59 -0.3 138,416 - BACOVA_04254 0.61 +0.4
Or see this region's nucleotide sequence