Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02982

Experiment: Chondroitin sulfate A from bovine trachea 2.5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_02980 and BACOVA_02981 are separated by 0 nucleotidesBACOVA_02981 and BACOVA_02982 are separated by 82 nucleotidesBACOVA_02982 and BACOVA_02983 are separated by 11 nucleotides BACOVA_02980: BACOVA_02980 - putative K+-transporting ATPase, C subunit, at 59,441 to 59,971 _02980 BACOVA_02981: BACOVA_02981 - hypothetical protein, at 59,972 to 60,856 _02981 BACOVA_02982: BACOVA_02982 - osmosensitive K+ channel His kinase sensor domain protein, at 60,939 to 62,069 _02982 BACOVA_02983: BACOVA_02983 - ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein, at 62,081 to 63,529 _02983 Position (kb) 60 61 62 63Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 59.966 kb on - strandat 59.969 kb on + strandat 60.067 kb on + strand, within BACOVA_02981at 60.068 kb on - strand, within BACOVA_02981at 60.080 kb on - strand, within BACOVA_02981at 60.085 kb on - strand, within BACOVA_02981at 60.156 kb on + strand, within BACOVA_02981at 60.166 kb on + strand, within BACOVA_02981at 60.167 kb on - strand, within BACOVA_02981at 60.167 kb on - strand, within BACOVA_02981at 60.190 kb on + strand, within BACOVA_02981at 60.193 kb on - strand, within BACOVA_02981at 60.215 kb on + strand, within BACOVA_02981at 60.219 kb on + strand, within BACOVA_02981at 60.219 kb on + strand, within BACOVA_02981at 60.229 kb on + strand, within BACOVA_02981at 60.230 kb on - strand, within BACOVA_02981at 60.230 kb on - strand, within BACOVA_02981at 60.296 kb on - strand, within BACOVA_02981at 60.313 kb on + strand, within BACOVA_02981at 60.356 kb on + strand, within BACOVA_02981at 60.357 kb on - strand, within BACOVA_02981at 60.359 kb on - strand, within BACOVA_02981at 60.359 kb on - strand, within BACOVA_02981at 60.428 kb on - strand, within BACOVA_02981at 60.440 kb on - strand, within BACOVA_02981at 60.498 kb on + strand, within BACOVA_02981at 60.499 kb on - strand, within BACOVA_02981at 60.499 kb on - strand, within BACOVA_02981at 60.505 kb on + strand, within BACOVA_02981at 60.535 kb on + strand, within BACOVA_02981at 60.535 kb on + strand, within BACOVA_02981at 60.536 kb on - strand, within BACOVA_02981at 60.545 kb on + strand, within BACOVA_02981at 60.547 kb on + strand, within BACOVA_02981at 60.547 kb on + strand, within BACOVA_02981at 60.550 kb on + strand, within BACOVA_02981at 60.550 kb on + strand, within BACOVA_02981at 60.551 kb on - strand, within BACOVA_02981at 60.551 kb on - strand, within BACOVA_02981at 60.577 kb on + strand, within BACOVA_02981at 60.595 kb on + strand, within BACOVA_02981at 60.595 kb on + strand, within BACOVA_02981at 60.596 kb on - strand, within BACOVA_02981at 60.618 kb on + strand, within BACOVA_02981at 60.664 kb on + strand, within BACOVA_02981at 60.674 kb on - strand, within BACOVA_02981at 60.698 kb on + strand, within BACOVA_02981at 60.698 kb on + strand, within BACOVA_02981at 60.701 kb on + strand, within BACOVA_02981at 60.701 kb on + strand, within BACOVA_02981at 60.702 kb on - strand, within BACOVA_02981at 60.760 kb on + strand, within BACOVA_02981at 60.782 kb on - strandat 60.782 kb on - strandat 60.782 kb on - strandat 60.782 kb on - strandat 60.782 kb on - strandat 60.790 kb on - strandat 60.790 kb on - strandat 60.796 kb on + strandat 60.796 kb on + strandat 60.846 kb on + strandat 60.847 kb on - strandat 60.854 kb on + strandat 60.854 kb on + strandat 60.902 kb on + strandat 60.903 kb on - strandat 60.903 kb on - strandat 60.927 kb on - strandat 60.947 kb on + strandat 60.948 kb on - strandat 60.961 kb on + strandat 61.014 kb on + strandat 61.015 kb on - strandat 61.023 kb on - strandat 61.048 kb on - strandat 61.048 kb on - strandat 61.052 kb on + strand, within BACOVA_02982at 61.053 kb on - strand, within BACOVA_02982at 61.053 kb on - strand, within BACOVA_02982at 61.053 kb on - strand, within BACOVA_02982at 61.109 kb on + strand, within BACOVA_02982at 61.147 kb on + strand, within BACOVA_02982at 61.148 kb on - strand, within BACOVA_02982at 61.265 kb on - strand, within BACOVA_02982at 61.315 kb on + strand, within BACOVA_02982at 61.316 kb on - strand, within BACOVA_02982at 61.493 kb on - strand, within BACOVA_02982at 61.493 kb on - strand, within BACOVA_02982at 61.521 kb on + strand, within BACOVA_02982at 61.522 kb on - strand, within BACOVA_02982at 61.576 kb on + strand, within BACOVA_02982at 61.617 kb on - strand, within BACOVA_02982at 61.695 kb on - strand, within BACOVA_02982at 61.695 kb on - strand, within BACOVA_02982at 61.700 kb on + strand, within BACOVA_02982at 61.700 kb on + strand, within BACOVA_02982at 61.758 kb on + strand, within BACOVA_02982at 61.759 kb on - strand, within BACOVA_02982at 61.760 kb on + strand, within BACOVA_02982at 61.782 kb on + strand, within BACOVA_02982at 61.783 kb on - strand, within BACOVA_02982at 61.783 kb on - strand, within BACOVA_02982at 61.783 kb on - strand, within BACOVA_02982at 61.811 kb on + strand, within BACOVA_02982at 61.812 kb on - strand, within BACOVA_02982at 61.812 kb on - strand, within BACOVA_02982at 61.812 kb on - strand, within BACOVA_02982at 61.898 kb on + strand, within BACOVA_02982at 61.898 kb on + strand, within BACOVA_02982at 61.899 kb on - strand, within BACOVA_02982at 62.011 kb on - strandat 62.043 kb on - strandat 62.043 kb on - strandat 62.043 kb on - strandat 62.047 kb on + strandat 62.048 kb on - strandat 62.068 kb on - strandat 62.070 kb on + strandat 62.070 kb on + strandat 62.071 kb on - strandat 62.074 kb on - strandat 62.095 kb on + strandat 62.099 kb on - strandat 62.142 kb on + strandat 62.167 kb on - strandat 62.204 kb on - strandat 62.204 kb on - strandat 62.227 kb on - strand, within BACOVA_02983at 62.239 kb on - strand, within BACOVA_02983at 62.251 kb on + strand, within BACOVA_02983at 62.270 kb on - strand, within BACOVA_02983at 62.275 kb on + strand, within BACOVA_02983at 62.276 kb on - strand, within BACOVA_02983at 62.276 kb on - strand, within BACOVA_02983at 62.308 kb on + strand, within BACOVA_02983at 62.311 kb on + strand, within BACOVA_02983at 62.314 kb on + strand, within BACOVA_02983at 62.315 kb on - strand, within BACOVA_02983at 62.315 kb on - strand, within BACOVA_02983at 62.369 kb on + strand, within BACOVA_02983at 62.369 kb on + strand, within BACOVA_02983at 62.370 kb on - strand, within BACOVA_02983at 62.467 kb on + strand, within BACOVA_02983at 62.467 kb on + strand, within BACOVA_02983at 62.502 kb on + strand, within BACOVA_02983at 62.519 kb on - strand, within BACOVA_02983at 62.569 kb on + strand, within BACOVA_02983at 62.586 kb on + strand, within BACOVA_02983at 62.586 kb on + strand, within BACOVA_02983at 62.586 kb on + strand, within BACOVA_02983at 62.587 kb on - strand, within BACOVA_02983at 62.590 kb on + strand, within BACOVA_02983at 62.591 kb on - strand, within BACOVA_02983at 62.591 kb on - strand, within BACOVA_02983at 62.600 kb on - strand, within BACOVA_02983at 62.728 kb on + strand, within BACOVA_02983at 62.728 kb on + strand, within BACOVA_02983at 62.729 kb on - strand, within BACOVA_02983at 62.731 kb on + strand, within BACOVA_02983at 62.742 kb on - strand, within BACOVA_02983at 62.756 kb on + strand, within BACOVA_02983at 62.756 kb on + strand, within BACOVA_02983at 62.820 kb on + strand, within BACOVA_02983at 62.830 kb on + strand, within BACOVA_02983at 62.830 kb on + strand, within BACOVA_02983at 62.830 kb on + strand, within BACOVA_02983at 62.831 kb on - strand, within BACOVA_02983at 62.831 kb on - strand, within BACOVA_02983at 62.831 kb on - strand, within BACOVA_02983at 62.831 kb on - strand, within BACOVA_02983at 62.831 kb on - strand, within BACOVA_02983at 62.833 kb on - strand, within BACOVA_02983at 62.935 kb on - strand, within BACOVA_02983at 62.996 kb on - strand, within BACOVA_02983at 63.004 kb on + strand, within BACOVA_02983at 63.043 kb on + strand, within BACOVA_02983at 63.055 kb on - strand, within BACOVA_02983

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chondroitin sulfate A from bovine trachea 2.5 mg/ml (C)
remove
59,966 - +0.1
59,969 + +1.0
60,067 + BACOVA_02981 0.11 +1.0
60,068 - BACOVA_02981 0.11 -1.3
60,080 - BACOVA_02981 0.12 -0.1
60,085 - BACOVA_02981 0.13 -0.5
60,156 + BACOVA_02981 0.21 +0.7
60,166 + BACOVA_02981 0.22 +0.4
60,167 - BACOVA_02981 0.22 -0.0
60,167 - BACOVA_02981 0.22 -0.1
60,190 + BACOVA_02981 0.25 +0.3
60,193 - BACOVA_02981 0.25 -1.1
60,215 + BACOVA_02981 0.27 -2.9
60,219 + BACOVA_02981 0.28 +0.2
60,219 + BACOVA_02981 0.28 +0.3
60,229 + BACOVA_02981 0.29 +0.8
60,230 - BACOVA_02981 0.29 +0.7
60,230 - BACOVA_02981 0.29 +0.1
60,296 - BACOVA_02981 0.37 +0.1
60,313 + BACOVA_02981 0.39 -0.4
60,356 + BACOVA_02981 0.43 -3.7
60,357 - BACOVA_02981 0.44 +0.6
60,359 - BACOVA_02981 0.44 -0.4
60,359 - BACOVA_02981 0.44 -0.5
60,428 - BACOVA_02981 0.52 -0.0
60,440 - BACOVA_02981 0.53 -0.7
60,498 + BACOVA_02981 0.59 +0.2
60,499 - BACOVA_02981 0.60 +0.2
60,499 - BACOVA_02981 0.60 -0.1
60,505 + BACOVA_02981 0.60 -1.0
60,535 + BACOVA_02981 0.64 +0.1
60,535 + BACOVA_02981 0.64 +1.3
60,536 - BACOVA_02981 0.64 -0.9
60,545 + BACOVA_02981 0.65 +0.1
60,547 + BACOVA_02981 0.65 +1.1
60,547 + BACOVA_02981 0.65 +0.1
60,550 + BACOVA_02981 0.65 +0.0
60,550 + BACOVA_02981 0.65 +0.2
60,551 - BACOVA_02981 0.65 -0.4
60,551 - BACOVA_02981 0.65 +0.3
60,577 + BACOVA_02981 0.68 +0.8
60,595 + BACOVA_02981 0.70 +0.8
60,595 + BACOVA_02981 0.70 +0.3
60,596 - BACOVA_02981 0.71 -0.8
60,618 + BACOVA_02981 0.73 -0.2
60,664 + BACOVA_02981 0.78 +0.2
60,674 - BACOVA_02981 0.79 -0.6
60,698 + BACOVA_02981 0.82 +0.6
60,698 + BACOVA_02981 0.82 +0.4
60,701 + BACOVA_02981 0.82 +0.9
60,701 + BACOVA_02981 0.82 +0.2
60,702 - BACOVA_02981 0.82 +1.6
60,760 + BACOVA_02981 0.89 -0.5
60,782 - +0.6
60,782 - +0.5
60,782 - +1.0
60,782 - +1.0
60,782 - -0.8
60,790 - -0.1
60,790 - +0.2
60,796 + -0.0
60,796 + +1.0
60,846 + +0.1
60,847 - -0.9
60,854 + -0.5
60,854 + +0.2
60,902 + +0.8
60,903 - -1.9
60,903 - -0.1
60,927 - -0.3
60,947 + -2.5
60,948 - +0.1
60,961 + +0.1
61,014 + +0.2
61,015 - -0.5
61,023 - +0.3
61,048 - +0.1
61,048 - -0.1
61,052 + BACOVA_02982 0.10 +0.1
61,053 - BACOVA_02982 0.10 +0.1
61,053 - BACOVA_02982 0.10 -0.4
61,053 - BACOVA_02982 0.10 -0.0
61,109 + BACOVA_02982 0.15 -0.5
61,147 + BACOVA_02982 0.18 -0.0
61,148 - BACOVA_02982 0.18 -0.0
61,265 - BACOVA_02982 0.29 +0.2
61,315 + BACOVA_02982 0.33 +0.3
61,316 - BACOVA_02982 0.33 -1.5
61,493 - BACOVA_02982 0.49 +1.2
61,493 - BACOVA_02982 0.49 +1.8
61,521 + BACOVA_02982 0.51 -0.9
61,522 - BACOVA_02982 0.52 +1.4
61,576 + BACOVA_02982 0.56 -0.5
61,617 - BACOVA_02982 0.60 +1.0
61,695 - BACOVA_02982 0.67 +0.0
61,695 - BACOVA_02982 0.67 -1.8
61,700 + BACOVA_02982 0.67 +0.1
61,700 + BACOVA_02982 0.67 +0.1
61,758 + BACOVA_02982 0.72 +0.5
61,759 - BACOVA_02982 0.73 +0.2
61,760 + BACOVA_02982 0.73 +0.2
61,782 + BACOVA_02982 0.75 -0.0
61,783 - BACOVA_02982 0.75 -0.5
61,783 - BACOVA_02982 0.75 -0.6
61,783 - BACOVA_02982 0.75 -2.5
61,811 + BACOVA_02982 0.77 +0.0
61,812 - BACOVA_02982 0.77 -0.2
61,812 - BACOVA_02982 0.77 -0.9
61,812 - BACOVA_02982 0.77 -0.5
61,898 + BACOVA_02982 0.85 -0.3
61,898 + BACOVA_02982 0.85 -0.1
61,899 - BACOVA_02982 0.85 +0.7
62,011 - +0.9
62,043 - +0.5
62,043 - -1.4
62,043 - +0.0
62,047 + -0.3
62,048 - -0.8
62,068 - +0.1
62,070 + -0.8
62,070 + -0.6
62,071 - +0.2
62,074 - +0.4
62,095 + +0.4
62,099 - +0.1
62,142 + +0.4
62,167 - -0.3
62,204 - +1.4
62,204 - -0.9
62,227 - BACOVA_02983 0.10 -0.2
62,239 - BACOVA_02983 0.11 +0.6
62,251 + BACOVA_02983 0.12 -0.0
62,270 - BACOVA_02983 0.13 -0.2
62,275 + BACOVA_02983 0.13 -0.6
62,276 - BACOVA_02983 0.13 +0.2
62,276 - BACOVA_02983 0.13 +0.4
62,308 + BACOVA_02983 0.16 +0.5
62,311 + BACOVA_02983 0.16 -0.2
62,314 + BACOVA_02983 0.16 +0.2
62,315 - BACOVA_02983 0.16 +0.2
62,315 - BACOVA_02983 0.16 -1.4
62,369 + BACOVA_02983 0.20 +0.4
62,369 + BACOVA_02983 0.20 +0.1
62,370 - BACOVA_02983 0.20 -0.9
62,467 + BACOVA_02983 0.27 -0.1
62,467 + BACOVA_02983 0.27 +0.5
62,502 + BACOVA_02983 0.29 +2.0
62,519 - BACOVA_02983 0.30 -1.0
62,569 + BACOVA_02983 0.34 -0.0
62,586 + BACOVA_02983 0.35 -1.0
62,586 + BACOVA_02983 0.35 +0.5
62,586 + BACOVA_02983 0.35 -1.0
62,587 - BACOVA_02983 0.35 +0.1
62,590 + BACOVA_02983 0.35 +0.1
62,591 - BACOVA_02983 0.35 -0.6
62,591 - BACOVA_02983 0.35 -0.5
62,600 - BACOVA_02983 0.36 +0.2
62,728 + BACOVA_02983 0.45 -1.5
62,728 + BACOVA_02983 0.45 +0.8
62,729 - BACOVA_02983 0.45 +0.2
62,731 + BACOVA_02983 0.45 -0.2
62,742 - BACOVA_02983 0.46 -0.3
62,756 + BACOVA_02983 0.47 +1.7
62,756 + BACOVA_02983 0.47 -0.0
62,820 + BACOVA_02983 0.51 +1.6
62,830 + BACOVA_02983 0.52 +0.1
62,830 + BACOVA_02983 0.52 -0.2
62,830 + BACOVA_02983 0.52 +0.6
62,831 - BACOVA_02983 0.52 -0.3
62,831 - BACOVA_02983 0.52 -0.5
62,831 - BACOVA_02983 0.52 -0.2
62,831 - BACOVA_02983 0.52 +0.8
62,831 - BACOVA_02983 0.52 -0.6
62,833 - BACOVA_02983 0.52 +1.0
62,935 - BACOVA_02983 0.59 +0.0
62,996 - BACOVA_02983 0.63 -0.6
63,004 + BACOVA_02983 0.64 +0.4
63,043 + BACOVA_02983 0.66 +0.5
63,055 - BACOVA_02983 0.67 +0.3

Or see this region's nucleotide sequence