Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02476

Experiment: Chondroitin sulfate A from bovine trachea 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02475 and BACOVA_02476 are separated by 162 nucleotidesBACOVA_02476 and BACOVA_02477 are separated by 68 nucleotidesBACOVA_02477 and BACOVA_02478 are separated by 253 nucleotides BACOVA_02475: BACOVA_02475 - hypothetical protein, at 239,868 to 241,442 _02475 BACOVA_02476: BACOVA_02476 - putative DNA-binding protein, at 241,605 to 242,129 _02476 BACOVA_02477: BACOVA_02477 - hypothetical protein, at 242,198 to 242,290 _02477 BACOVA_02478: BACOVA_02478 - transglycosylase, at 242,544 to 244,871 _02478 Position (kb) 241 242 243Strain fitness (log2 ratio) -2 -1 0 1 2at 240.695 kb on + strand, within BACOVA_02475at 240.697 kb on + strand, within BACOVA_02475at 240.697 kb on + strand, within BACOVA_02475at 240.698 kb on - strand, within BACOVA_02475at 240.698 kb on - strand, within BACOVA_02475at 240.700 kb on - strand, within BACOVA_02475at 240.767 kb on + strand, within BACOVA_02475at 240.768 kb on - strand, within BACOVA_02475at 240.773 kb on + strand, within BACOVA_02475at 240.773 kb on + strand, within BACOVA_02475at 240.774 kb on - strand, within BACOVA_02475at 240.777 kb on + strand, within BACOVA_02475at 240.777 kb on + strand, within BACOVA_02475at 240.778 kb on - strand, within BACOVA_02475at 240.778 kb on - strand, within BACOVA_02475at 240.784 kb on + strand, within BACOVA_02475at 240.788 kb on + strand, within BACOVA_02475at 240.788 kb on + strand, within BACOVA_02475at 240.789 kb on - strand, within BACOVA_02475at 240.884 kb on + strand, within BACOVA_02475at 240.896 kb on - strand, within BACOVA_02475at 240.897 kb on + strand, within BACOVA_02475at 240.912 kb on - strand, within BACOVA_02475at 240.917 kb on + strand, within BACOVA_02475at 240.948 kb on + strand, within BACOVA_02475at 240.950 kb on + strand, within BACOVA_02475at 241.011 kb on + strand, within BACOVA_02475at 241.011 kb on + strand, within BACOVA_02475at 241.073 kb on + strand, within BACOVA_02475at 241.126 kb on + strand, within BACOVA_02475at 241.149 kb on + strand, within BACOVA_02475at 241.149 kb on + strand, within BACOVA_02475at 241.177 kb on - strand, within BACOVA_02475at 241.178 kb on + strand, within BACOVA_02475at 241.179 kb on - strand, within BACOVA_02475at 241.184 kb on - strand, within BACOVA_02475at 241.185 kb on + strand, within BACOVA_02475at 241.196 kb on - strand, within BACOVA_02475at 241.241 kb on - strand, within BACOVA_02475at 241.244 kb on + strand, within BACOVA_02475at 241.244 kb on + strand, within BACOVA_02475at 241.247 kb on - strand, within BACOVA_02475at 241.250 kb on - strand, within BACOVA_02475at 241.256 kb on + strand, within BACOVA_02475at 241.265 kb on + strand, within BACOVA_02475at 241.265 kb on + strand, within BACOVA_02475at 241.266 kb on - strand, within BACOVA_02475at 241.272 kb on + strand, within BACOVA_02475at 241.273 kb on - strand, within BACOVA_02475at 241.357 kb on + strandat 241.357 kb on + strandat 241.358 kb on - strandat 241.358 kb on - strandat 241.409 kb on + strandat 241.431 kb on - strandat 241.432 kb on + strandat 241.433 kb on - strandat 241.469 kb on + strandat 241.469 kb on + strandat 241.471 kb on + strandat 241.483 kb on + strandat 241.526 kb on + strandat 241.567 kb on + strandat 241.604 kb on + strandat 241.605 kb on - strandat 241.618 kb on - strandat 241.664 kb on + strand, within BACOVA_02476at 241.671 kb on + strand, within BACOVA_02476at 241.672 kb on - strand, within BACOVA_02476at 241.674 kb on + strand, within BACOVA_02476at 241.717 kb on - strand, within BACOVA_02476at 241.810 kb on + strand, within BACOVA_02476at 241.853 kb on + strand, within BACOVA_02476at 241.854 kb on - strand, within BACOVA_02476at 241.944 kb on - strand, within BACOVA_02476at 242.014 kb on - strand, within BACOVA_02476at 242.034 kb on - strand, within BACOVA_02476at 242.146 kb on - strandat 242.265 kb on + strand, within BACOVA_02477at 242.265 kb on + strand, within BACOVA_02477at 242.289 kb on - strandat 242.289 kb on - strandat 242.302 kb on - strandat 242.303 kb on + strandat 242.304 kb on - strandat 242.311 kb on + strandat 242.311 kb on + strandat 242.311 kb on + strandat 242.312 kb on - strandat 242.313 kb on + strandat 242.314 kb on - strandat 242.328 kb on - strandat 242.328 kb on - strandat 242.366 kb on + strandat 242.367 kb on - strandat 242.367 kb on - strandat 242.369 kb on + strandat 242.369 kb on + strandat 242.370 kb on - strandat 242.370 kb on - strandat 242.370 kb on - strandat 242.418 kb on + strandat 242.419 kb on - strandat 242.426 kb on - strandat 242.447 kb on - strandat 242.454 kb on + strandat 242.529 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chondroitin sulfate A from bovine trachea 2.5 mg/ml (C)
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240,695 + BACOVA_02475 0.53 +1.0
240,697 + BACOVA_02475 0.53 +0.2
240,697 + BACOVA_02475 0.53 -0.3
240,698 - BACOVA_02475 0.53 -0.2
240,698 - BACOVA_02475 0.53 +0.0
240,700 - BACOVA_02475 0.53 +0.0
240,767 + BACOVA_02475 0.57 +0.2
240,768 - BACOVA_02475 0.57 -0.6
240,773 + BACOVA_02475 0.57 -0.2
240,773 + BACOVA_02475 0.57 -0.6
240,774 - BACOVA_02475 0.58 -0.9
240,777 + BACOVA_02475 0.58 -0.6
240,777 + BACOVA_02475 0.58 +0.8
240,778 - BACOVA_02475 0.58 +0.6
240,778 - BACOVA_02475 0.58 -0.8
240,784 + BACOVA_02475 0.58 +0.2
240,788 + BACOVA_02475 0.58 -1.9
240,788 + BACOVA_02475 0.58 -0.4
240,789 - BACOVA_02475 0.58 -1.0
240,884 + BACOVA_02475 0.65 -0.9
240,896 - BACOVA_02475 0.65 +0.0
240,897 + BACOVA_02475 0.65 -0.6
240,912 - BACOVA_02475 0.66 -1.6
240,917 + BACOVA_02475 0.67 -1.1
240,948 + BACOVA_02475 0.69 -0.2
240,950 + BACOVA_02475 0.69 -2.0
241,011 + BACOVA_02475 0.73 +0.2
241,011 + BACOVA_02475 0.73 -0.1
241,073 + BACOVA_02475 0.77 +0.5
241,126 + BACOVA_02475 0.80 +0.5
241,149 + BACOVA_02475 0.81 -0.2
241,149 + BACOVA_02475 0.81 -2.1
241,177 - BACOVA_02475 0.83 -0.2
241,178 + BACOVA_02475 0.83 +0.3
241,179 - BACOVA_02475 0.83 -0.2
241,184 - BACOVA_02475 0.84 -0.6
241,185 + BACOVA_02475 0.84 +0.4
241,196 - BACOVA_02475 0.84 -1.1
241,241 - BACOVA_02475 0.87 +0.6
241,244 + BACOVA_02475 0.87 +0.4
241,244 + BACOVA_02475 0.87 -0.6
241,247 - BACOVA_02475 0.88 -0.6
241,250 - BACOVA_02475 0.88 +0.0
241,256 + BACOVA_02475 0.88 -0.3
241,265 + BACOVA_02475 0.89 -0.1
241,265 + BACOVA_02475 0.89 +1.4
241,266 - BACOVA_02475 0.89 +0.2
241,272 + BACOVA_02475 0.89 -0.8
241,273 - BACOVA_02475 0.89 -0.2
241,357 + +0.8
241,357 + -1.2
241,358 - +0.0
241,358 - -1.0
241,409 + -0.1
241,431 - -1.0
241,432 + -0.5
241,433 - +1.2
241,469 + -0.4
241,469 + +0.0
241,471 + -2.0
241,483 + +1.3
241,526 + +1.0
241,567 + -0.4
241,604 + -0.9
241,605 - +0.2
241,618 - +1.0
241,664 + BACOVA_02476 0.11 -0.3
241,671 + BACOVA_02476 0.13 +1.2
241,672 - BACOVA_02476 0.13 +0.0
241,674 + BACOVA_02476 0.13 -0.2
241,717 - BACOVA_02476 0.21 -1.3
241,810 + BACOVA_02476 0.39 -0.1
241,853 + BACOVA_02476 0.47 +0.5
241,854 - BACOVA_02476 0.47 -0.6
241,944 - BACOVA_02476 0.65 +1.2
242,014 - BACOVA_02476 0.78 +0.3
242,034 - BACOVA_02476 0.82 +0.7
242,146 - -1.4
242,265 + BACOVA_02477 0.72 +2.2
242,265 + BACOVA_02477 0.72 +0.1
242,289 - +0.3
242,289 - +0.0
242,302 - -0.4
242,303 + +0.0
242,304 - -0.1
242,311 + -0.0
242,311 + -0.6
242,311 + -0.3
242,312 - +0.6
242,313 + +0.0
242,314 - +0.8
242,328 - +1.4
242,328 - -1.1
242,366 + +0.0
242,367 - -1.0
242,367 - -0.8
242,369 + +0.4
242,369 + +0.4
242,370 - -0.5
242,370 - +1.0
242,370 - -1.6
242,418 + +0.8
242,419 - -0.8
242,426 - +1.8
242,447 - -1.0
242,454 + -0.6
242,529 + -0.6

Or see this region's nucleotide sequence