Experiment: Chondroitin sulfate A from bovine trachea 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02300 and BACOVA_02301 are separated by 28 nucleotides BACOVA_02301 and BACOVA_02302 are separated by 25 nucleotides BACOVA_02302 and BACOVA_02303 overlap by 4 nucleotides
BACOVA_02300: BACOVA_02300 - hypothetical protein, at 69,612 to 70,739
_02300
BACOVA_02301: BACOVA_02301 - conjugative transposon TraK protein, at 70,768 to 71,364
_02301
BACOVA_02302: BACOVA_02302 - hypothetical protein, at 71,390 to 71,881
_02302
BACOVA_02303: BACOVA_02303 - conjugative transposon TraM protein, at 71,878 to 73,059
_02303
Position (kb) 70
71
72 Strain fitness (log2 ratio) -2
-1
0
1
2 at 69.778 kb on - strand, within BACOVA_02300 at 69.877 kb on + strand, within BACOVA_02300 at 70.092 kb on + strand, within BACOVA_02300 at 70.224 kb on + strand, within BACOVA_02300 at 70.225 kb on - strand, within BACOVA_02300 at 70.347 kb on + strand, within BACOVA_02300 at 70.381 kb on - strand, within BACOVA_02300 at 70.393 kb on - strand, within BACOVA_02300 at 70.393 kb on - strand, within BACOVA_02300 at 70.396 kb on - strand, within BACOVA_02300 at 70.414 kb on + strand, within BACOVA_02300 at 70.416 kb on + strand, within BACOVA_02300 at 70.417 kb on - strand, within BACOVA_02300 at 70.417 kb on - strand, within BACOVA_02300 at 70.417 kb on - strand, within BACOVA_02300 at 70.528 kb on - strand, within BACOVA_02300 at 70.539 kb on - strand, within BACOVA_02300 at 70.554 kb on + strand, within BACOVA_02300 at 70.742 kb on - strand at 70.775 kb on + strand at 70.776 kb on - strand at 70.906 kb on + strand, within BACOVA_02301 at 70.906 kb on + strand, within BACOVA_02301 at 70.906 kb on + strand, within BACOVA_02301 at 71.036 kb on - strand, within BACOVA_02301 at 71.037 kb on + strand, within BACOVA_02301 at 71.038 kb on - strand, within BACOVA_02301 at 71.065 kb on + strand, within BACOVA_02301 at 71.065 kb on + strand, within BACOVA_02301 at 71.135 kb on + strand, within BACOVA_02301 at 71.136 kb on - strand, within BACOVA_02301 at 71.210 kb on - strand, within BACOVA_02301 at 71.377 kb on + strand at 71.410 kb on - strand at 71.446 kb on - strand, within BACOVA_02302 at 71.612 kb on - strand, within BACOVA_02302 at 71.691 kb on + strand, within BACOVA_02302 at 71.692 kb on - strand, within BACOVA_02302 at 71.872 kb on + strand at 71.909 kb on - strand at 71.954 kb on - strand at 71.954 kb on - strand at 71.954 kb on - strand at 72.210 kb on + strand, within BACOVA_02303 at 72.281 kb on - strand, within BACOVA_02303
Per-strain Table
Position Strand Gene LocusTag Fraction Chondroitin sulfate A from bovine trachea 2.5 mg/ml (C) remove 69,778 - BACOVA_02300 0.15 -0.9 69,877 + BACOVA_02300 0.23 +0.2 70,092 + BACOVA_02300 0.43 +1.6 70,224 + BACOVA_02300 0.54 -1.4 70,225 - BACOVA_02300 0.54 -0.1 70,347 + BACOVA_02300 0.65 -0.0 70,381 - BACOVA_02300 0.68 -0.3 70,393 - BACOVA_02300 0.69 -0.1 70,393 - BACOVA_02300 0.69 +0.2 70,396 - BACOVA_02300 0.70 -0.8 70,414 + BACOVA_02300 0.71 -0.8 70,416 + BACOVA_02300 0.71 -0.4 70,417 - BACOVA_02300 0.71 -0.3 70,417 - BACOVA_02300 0.71 +0.6 70,417 - BACOVA_02300 0.71 +0.4 70,528 - BACOVA_02300 0.81 +0.6 70,539 - BACOVA_02300 0.82 -0.8 70,554 + BACOVA_02300 0.84 +0.6 70,742 - -1.4 70,775 + +1.4 70,776 - -1.0 70,906 + BACOVA_02301 0.23 -0.6 70,906 + BACOVA_02301 0.23 -1.6 70,906 + BACOVA_02301 0.23 -0.6 71,036 - BACOVA_02301 0.45 +0.1 71,037 + BACOVA_02301 0.45 +0.3 71,038 - BACOVA_02301 0.45 -0.3 71,065 + BACOVA_02301 0.50 -1.8 71,065 + BACOVA_02301 0.50 +0.2 71,135 + BACOVA_02301 0.61 -1.0 71,136 - BACOVA_02301 0.62 -1.0 71,210 - BACOVA_02301 0.74 +1.0 71,377 + +0.6 71,410 - -1.2 71,446 - BACOVA_02302 0.11 -1.6 71,612 - BACOVA_02302 0.45 -1.0 71,691 + BACOVA_02302 0.61 -0.0 71,692 - BACOVA_02302 0.61 -1.4 71,872 + -0.0 71,909 - -0.3 71,954 - +0.9 71,954 - +1.6 71,954 - -0.5 72,210 + BACOVA_02303 0.28 -1.4 72,281 - BACOVA_02303 0.34 +2.6
Or see this region's nucleotide sequence