Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02299

Experiment: Chondroitin sulfate A from bovine trachea 2.5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_02297 and BACOVA_02298 are separated by 18 nucleotidesBACOVA_02298 and BACOVA_02299 overlap by 11 nucleotidesBACOVA_02299 and BACOVA_02300 are separated by 24 nucleotides BACOVA_02297: BACOVA_02297 - hypothetical protein, at 67,457 to 68,197 _02297 BACOVA_02298: BACOVA_02298 - hypothetical protein, at 68,216 to 68,920 _02298 BACOVA_02299: BACOVA_02299 - hypothetical protein, at 68,910 to 69,587 _02299 BACOVA_02300: BACOVA_02300 - hypothetical protein, at 69,612 to 70,739 _02300 Position (kb) 68 69 70Strain fitness (log2 ratio) -1 0 1 2at 68.015 kb on + strand, within BACOVA_02297at 68.018 kb on - strand, within BACOVA_02297at 68.035 kb on - strand, within BACOVA_02297at 68.040 kb on - strand, within BACOVA_02297at 68.193 kb on - strandat 68.232 kb on + strandat 68.232 kb on + strandat 68.242 kb on - strandat 68.248 kb on + strandat 68.298 kb on + strand, within BACOVA_02298at 68.476 kb on + strand, within BACOVA_02298at 68.553 kb on - strand, within BACOVA_02298at 68.564 kb on - strand, within BACOVA_02298at 68.587 kb on - strand, within BACOVA_02298at 68.587 kb on - strand, within BACOVA_02298at 68.613 kb on - strand, within BACOVA_02298at 68.615 kb on + strand, within BACOVA_02298at 68.661 kb on - strand, within BACOVA_02298at 68.661 kb on - strand, within BACOVA_02298at 68.667 kb on + strand, within BACOVA_02298at 68.667 kb on + strand, within BACOVA_02298at 68.670 kb on - strand, within BACOVA_02298at 68.772 kb on - strand, within BACOVA_02298at 68.772 kb on - strand, within BACOVA_02298at 68.835 kb on - strand, within BACOVA_02298at 68.945 kb on + strandat 68.947 kb on + strandat 69.057 kb on + strand, within BACOVA_02299at 69.058 kb on - strand, within BACOVA_02299at 69.060 kb on + strand, within BACOVA_02299at 69.060 kb on + strand, within BACOVA_02299at 69.060 kb on + strand, within BACOVA_02299at 69.060 kb on + strand, within BACOVA_02299at 69.061 kb on - strand, within BACOVA_02299at 69.161 kb on - strand, within BACOVA_02299at 69.244 kb on + strand, within BACOVA_02299at 69.244 kb on + strand, within BACOVA_02299at 69.245 kb on - strand, within BACOVA_02299at 69.303 kb on + strand, within BACOVA_02299at 69.312 kb on + strand, within BACOVA_02299at 69.332 kb on + strand, within BACOVA_02299at 69.363 kb on + strand, within BACOVA_02299at 69.453 kb on - strand, within BACOVA_02299at 69.508 kb on - strand, within BACOVA_02299at 69.582 kb on + strandat 69.585 kb on + strandat 69.594 kb on + strandat 69.611 kb on + strandat 69.619 kb on + strandat 69.623 kb on - strandat 69.627 kb on - strandat 69.640 kb on + strandat 69.641 kb on - strandat 69.641 kb on - strandat 69.641 kb on - strandat 69.778 kb on - strand, within BACOVA_02300at 69.877 kb on + strand, within BACOVA_02300at 70.092 kb on + strand, within BACOVA_02300at 70.224 kb on + strand, within BACOVA_02300at 70.225 kb on - strand, within BACOVA_02300at 70.347 kb on + strand, within BACOVA_02300at 70.381 kb on - strand, within BACOVA_02300at 70.393 kb on - strand, within BACOVA_02300at 70.393 kb on - strand, within BACOVA_02300at 70.396 kb on - strand, within BACOVA_02300at 70.414 kb on + strand, within BACOVA_02300at 70.416 kb on + strand, within BACOVA_02300at 70.417 kb on - strand, within BACOVA_02300at 70.417 kb on - strand, within BACOVA_02300at 70.417 kb on - strand, within BACOVA_02300at 70.528 kb on - strand, within BACOVA_02300at 70.539 kb on - strand, within BACOVA_02300at 70.554 kb on + strand, within BACOVA_02300

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chondroitin sulfate A from bovine trachea 2.5 mg/ml (C)
remove
68,015 + BACOVA_02297 0.75 -0.6
68,018 - BACOVA_02297 0.76 +0.1
68,035 - BACOVA_02297 0.78 -1.3
68,040 - BACOVA_02297 0.79 -0.4
68,193 - +1.2
68,232 + +1.3
68,232 + +0.7
68,242 - -0.0
68,248 + +0.5
68,298 + BACOVA_02298 0.12 +1.1
68,476 + BACOVA_02298 0.37 -0.0
68,553 - BACOVA_02298 0.48 +0.4
68,564 - BACOVA_02298 0.49 -0.0
68,587 - BACOVA_02298 0.53 +0.3
68,587 - BACOVA_02298 0.53 +2.0
68,613 - BACOVA_02298 0.56 -0.4
68,615 + BACOVA_02298 0.57 -0.6
68,661 - BACOVA_02298 0.63 +1.3
68,661 - BACOVA_02298 0.63 +0.6
68,667 + BACOVA_02298 0.64 +0.6
68,667 + BACOVA_02298 0.64 -1.0
68,670 - BACOVA_02298 0.64 +0.4
68,772 - BACOVA_02298 0.79 -0.3
68,772 - BACOVA_02298 0.79 -1.7
68,835 - BACOVA_02298 0.88 -0.0
68,945 + -0.6
68,947 + +0.6
69,057 + BACOVA_02299 0.22 +0.4
69,058 - BACOVA_02299 0.22 -0.0
69,060 + BACOVA_02299 0.22 +2.6
69,060 + BACOVA_02299 0.22 -1.4
69,060 + BACOVA_02299 0.22 -0.2
69,060 + BACOVA_02299 0.22 -1.0
69,061 - BACOVA_02299 0.22 -1.2
69,161 - BACOVA_02299 0.37 -0.3
69,244 + BACOVA_02299 0.49 -0.2
69,244 + BACOVA_02299 0.49 -0.4
69,245 - BACOVA_02299 0.49 +2.0
69,303 + BACOVA_02299 0.58 -0.8
69,312 + BACOVA_02299 0.59 +2.6
69,332 + BACOVA_02299 0.62 -1.0
69,363 + BACOVA_02299 0.67 +0.4
69,453 - BACOVA_02299 0.80 +1.0
69,508 - BACOVA_02299 0.88 +0.6
69,582 + -0.6
69,585 + +0.4
69,594 + -0.0
69,611 + +1.0
69,619 + -0.6
69,623 - -1.3
69,627 - -0.6
69,640 + -0.0
69,641 - -0.8
69,641 - -0.6
69,641 - +2.0
69,778 - BACOVA_02300 0.15 -0.9
69,877 + BACOVA_02300 0.23 +0.2
70,092 + BACOVA_02300 0.43 +1.6
70,224 + BACOVA_02300 0.54 -1.4
70,225 - BACOVA_02300 0.54 -0.1
70,347 + BACOVA_02300 0.65 -0.0
70,381 - BACOVA_02300 0.68 -0.3
70,393 - BACOVA_02300 0.69 -0.1
70,393 - BACOVA_02300 0.69 +0.2
70,396 - BACOVA_02300 0.70 -0.8
70,414 + BACOVA_02300 0.71 -0.8
70,416 + BACOVA_02300 0.71 -0.4
70,417 - BACOVA_02300 0.71 -0.3
70,417 - BACOVA_02300 0.71 +0.6
70,417 - BACOVA_02300 0.71 +0.4
70,528 - BACOVA_02300 0.81 +0.6
70,539 - BACOVA_02300 0.82 -0.8
70,554 + BACOVA_02300 0.84 +0.6

Or see this region's nucleotide sequence