Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF964 and GFF965 are separated by 76 nucleotides GFF965 and GFF966 overlap by 4 nucleotides GFF966 and GFF967 are separated by 219 nucleotides
GFF964 - Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9) / Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5), at 275,813 to 276,664
GFF964
GFF965 - Two-component transcriptional response regulator, LuxR family, at 276,741 to 277,373
GFF965
GFF966 - Probable two-component transmembrane sensor histidine kinase transcription regulator protein (EC 2.7.3.-), at 277,370 to 279,910
GFF966
GFF967 - Pyruvate dehydrogenase E1 component (EC 1.2.4.1), at 280,130 to 282,844
GFF967
Position (kb) 277
278
279
280 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 276.683 kb on + strand at 276.735 kb on + strand at 276.736 kb on - strand at 276.736 kb on - strand at 276.736 kb on - strand at 276.736 kb on - strand at 276.736 kb on - strand at 276.736 kb on - strand at 276.736 kb on - strand at 276.742 kb on + strand at 276.742 kb on + strand at 276.742 kb on + strand at 276.742 kb on + strand at 276.742 kb on + strand at 276.742 kb on + strand at 276.742 kb on + strand at 276.742 kb on + strand at 276.743 kb on - strand at 276.743 kb on - strand at 276.743 kb on - strand at 277.235 kb on - strand, within GFF965 at 277.280 kb on - strand, within GFF965 at 277.343 kb on - strand at 277.343 kb on - strand at 277.380 kb on - strand at 277.380 kb on - strand at 277.380 kb on - strand at 277.397 kb on - strand at 277.397 kb on - strand at 277.397 kb on - strand at 277.397 kb on - strand at 277.400 kb on + strand at 277.471 kb on - strand at 277.471 kb on - strand at 277.471 kb on - strand at 277.576 kb on - strand at 278.047 kb on - strand, within GFF966 at 278.047 kb on - strand, within GFF966 at 278.538 kb on + strand, within GFF966 at 278.539 kb on - strand, within GFF966 at 278.539 kb on - strand, within GFF966 at 278.643 kb on + strand, within GFF966 at 278.643 kb on + strand, within GFF966 at 278.643 kb on + strand, within GFF966 at 278.643 kb on + strand, within GFF966 at 278.643 kb on + strand, within GFF966 at 278.643 kb on + strand, within GFF966 at 278.643 kb on + strand, within GFF966 at 278.643 kb on + strand, within GFF966 at 278.643 kb on + strand, within GFF966 at 278.643 kb on + strand, within GFF966 at 278.643 kb on + strand, within GFF966 at 278.644 kb on - strand, within GFF966 at 278.644 kb on - strand, within GFF966 at 278.644 kb on - strand, within GFF966 at 278.644 kb on - strand, within GFF966 at 278.644 kb on - strand, within GFF966 at 278.644 kb on - strand, within GFF966 at 278.644 kb on - strand, within GFF966 at 278.644 kb on - strand, within GFF966 at 278.644 kb on - strand, within GFF966 at 278.644 kb on - strand, within GFF966 at 278.772 kb on + strand, within GFF966 at 278.847 kb on + strand, within GFF966 at 278.847 kb on + strand, within GFF966 at 278.847 kb on + strand, within GFF966 at 278.847 kb on + strand, within GFF966 at 278.848 kb on - strand, within GFF966 at 278.848 kb on - strand, within GFF966 at 278.848 kb on - strand, within GFF966 at 278.848 kb on - strand, within GFF966 at 278.848 kb on - strand, within GFF966 at 278.915 kb on + strand, within GFF966 at 279.117 kb on + strand, within GFF966 at 279.118 kb on - strand, within GFF966 at 279.118 kb on - strand, within GFF966 at 279.172 kb on + strand, within GFF966 at 279.172 kb on + strand, within GFF966 at 279.173 kb on - strand, within GFF966 at 279.175 kb on + strand, within GFF966 at 279.175 kb on + strand, within GFF966 at 279.176 kb on - strand, within GFF966 at 279.176 kb on - strand, within GFF966 at 279.176 kb on - strand, within GFF966 at 279.226 kb on - strand, within GFF966 at 279.226 kb on - strand, within GFF966 at 279.226 kb on - strand, within GFF966 at 279.256 kb on - strand, within GFF966 at 279.378 kb on + strand, within GFF966 at 279.378 kb on + strand, within GFF966 at 279.379 kb on - strand, within GFF966 at 279.379 kb on - strand, within GFF966 at 279.411 kb on + strand, within GFF966 at 279.411 kb on + strand, within GFF966 at 279.411 kb on + strand, within GFF966 at 279.412 kb on - strand, within GFF966 at 279.695 kb on + strand at 279.696 kb on - strand at 279.696 kb on - strand at 279.728 kb on - strand at 279.735 kb on + strand at 279.921 kb on + strand at 279.921 kb on + strand at 279.921 kb on + strand at 279.921 kb on + strand at 279.921 kb on + strand at 279.921 kb on + strand at 279.922 kb on - strand at 279.922 kb on - strand at 279.984 kb on + strand at 279.984 kb on + strand at 279.988 kb on + strand at 279.988 kb on + strand at 279.988 kb on + strand at 279.988 kb on + strand at 279.988 kb on + strand at 279.988 kb on + strand at 279.988 kb on + strand at 279.988 kb on + strand at 279.988 kb on + strand at 279.988 kb on + strand at 279.988 kb on + strand at 279.989 kb on - strand at 279.989 kb on - strand at 279.989 kb on - strand at 279.989 kb on - strand at 279.989 kb on - strand at 279.989 kb on - strand at 279.989 kb on - strand at 279.989 kb on - strand at 279.989 kb on - strand at 279.989 kb on - strand at 279.989 kb on - strand at 279.989 kb on - strand at 279.989 kb on - strand at 279.989 kb on - strand at 279.989 kb on - strand at 279.989 kb on - strand at 279.989 kb on - strand at 279.989 kb on - strand at 279.989 kb on - strand at 279.989 kb on - strand at 280.038 kb on - strand at 280.053 kb on - strand at 280.053 kb on - strand at 280.056 kb on + strand at 280.056 kb on + strand at 280.058 kb on + strand at 280.058 kb on + strand at 280.058 kb on + strand at 280.059 kb on + strand at 280.059 kb on - strand at 280.086 kb on + strand at 280.086 kb on + strand at 280.086 kb on + strand at 280.086 kb on + strand at 280.086 kb on + strand at 280.087 kb on - strand at 280.087 kb on - strand at 280.094 kb on + strand at 280.094 kb on + strand at 280.095 kb on - strand at 280.095 kb on - strand at 280.095 kb on - strand at 280.095 kb on - strand at 280.095 kb on - strand at 280.095 kb on - strand at 280.095 kb on - strand at 280.095 kb on - strand at 280.114 kb on - strand at 280.325 kb on + strand at 280.325 kb on + strand at 280.325 kb on + strand at 280.325 kb on + strand at 280.325 kb on + strand at 280.326 kb on - strand at 280.326 kb on - strand at 280.326 kb on - strand at 280.326 kb on - strand at 280.400 kb on + strand at 280.400 kb on + strand at 280.400 kb on + strand at 280.400 kb on + strand at 280.400 kb on + strand at 280.401 kb on - strand at 280.401 kb on - strand at 280.401 kb on - strand at 280.401 kb on - strand at 280.401 kb on - strand at 280.401 kb on - strand at 280.401 kb on - strand at 280.574 kb on + strand, within GFF967 at 280.574 kb on + strand, within GFF967 at 280.574 kb on + strand, within GFF967 at 280.574 kb on + strand, within GFF967 at 280.574 kb on + strand, within GFF967 at 280.574 kb on + strand, within GFF967 at 280.574 kb on + strand, within GFF967 at 280.574 kb on + strand, within GFF967 at 280.574 kb on + strand, within GFF967 at 280.574 kb on + strand, within GFF967 at 280.574 kb on + strand, within GFF967 at 280.574 kb on + strand, within GFF967 at 280.575 kb on - strand, within GFF967 at 280.575 kb on - strand, within GFF967 at 280.575 kb on - strand, within GFF967 at 280.575 kb on - strand, within GFF967 at 280.575 kb on - strand, within GFF967 at 280.575 kb on - strand, within GFF967 at 280.575 kb on - strand, within GFF967 at 280.604 kb on + strand, within GFF967 at 280.604 kb on + strand, within GFF967 at 280.604 kb on + strand, within GFF967 at 280.604 kb on + strand, within GFF967 at 280.604 kb on + strand, within GFF967 at 280.604 kb on + strand, within GFF967 at 280.604 kb on + strand, within GFF967 at 280.604 kb on + strand, within GFF967 at 280.605 kb on - strand, within GFF967 at 280.605 kb on - strand, within GFF967 at 280.605 kb on - strand, within GFF967 at 280.605 kb on - strand, within GFF967 at 280.616 kb on + strand, within GFF967 at 280.769 kb on + strand, within GFF967 at 280.769 kb on + strand, within GFF967 at 280.769 kb on + strand, within GFF967 at 280.769 kb on + strand, within GFF967 at 280.769 kb on + strand, within GFF967 at 280.769 kb on + strand, within GFF967 at 280.769 kb on + strand, within GFF967 at 280.770 kb on - strand, within GFF967 at 280.770 kb on - strand, within GFF967 at 280.770 kb on - strand, within GFF967 at 280.770 kb on - strand, within GFF967 at 280.770 kb on - strand, within GFF967 at 280.790 kb on + strand, within GFF967 at 280.790 kb on + strand, within GFF967 at 280.790 kb on + strand, within GFF967 at 280.790 kb on + strand, within GFF967 at 280.790 kb on + strand, within GFF967 at 280.790 kb on + strand, within GFF967 at 280.790 kb on + strand, within GFF967 at 280.790 kb on + strand, within GFF967 at 280.791 kb on - strand, within GFF967
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 276,683 + -1.3 276,735 + +1.0 276,736 - -0.3 276,736 - -0.5 276,736 - -0.5 276,736 - -1.2 276,736 - -0.9 276,736 - +0.7 276,736 - -0.4 276,742 + -0.8 276,742 + -0.5 276,742 + +1.5 276,742 + -1.2 276,742 + +0.2 276,742 + +0.2 276,742 + -0.1 276,742 + +0.4 276,743 - +0.2 276,743 - -0.2 276,743 - -0.9 277,235 - GFF965 0.78 +1.5 277,280 - GFF965 0.85 -1.5 277,343 - -1.5 277,343 - -0.3 277,380 - -1.0 277,380 - -0.5 277,380 - -0.7 277,397 - +0.8 277,397 - -0.2 277,397 - -1.1 277,397 - -0.9 277,400 + -0.8 277,471 - -0.5 277,471 - -1.6 277,471 - -1.3 277,576 - +0.5 278,047 - GFF966 0.27 -2.2 278,047 - GFF966 0.27 -1.6 278,538 + GFF966 0.46 -1.5 278,539 - GFF966 0.46 -0.8 278,539 - GFF966 0.46 -0.0 278,643 + GFF966 0.50 -2.4 278,643 + GFF966 0.50 -0.5 278,643 + GFF966 0.50 -2.2 278,643 + GFF966 0.50 +0.1 278,643 + GFF966 0.50 -2.2 278,643 + GFF966 0.50 -0.8 278,643 + GFF966 0.50 -1.3 278,643 + GFF966 0.50 -2.6 278,643 + GFF966 0.50 -1.2 278,643 + GFF966 0.50 -2.4 278,643 + GFF966 0.50 +0.5 278,644 - GFF966 0.50 -0.0 278,644 - GFF966 0.50 -0.8 278,644 - GFF966 0.50 -1.2 278,644 - GFF966 0.50 +0.5 278,644 - GFF966 0.50 -1.5 278,644 - GFF966 0.50 -1.8 278,644 - GFF966 0.50 -0.8 278,644 - GFF966 0.50 +0.8 278,644 - GFF966 0.50 -0.7 278,644 - GFF966 0.50 -1.2 278,772 + GFF966 0.55 -0.6 278,847 + GFF966 0.58 -0.0 278,847 + GFF966 0.58 +1.5 278,847 + GFF966 0.58 -1.8 278,847 + GFF966 0.58 -2.6 278,848 - GFF966 0.58 +1.5 278,848 - GFF966 0.58 -2.3 278,848 - GFF966 0.58 +0.5 278,848 - GFF966 0.58 -1.0 278,848 - GFF966 0.58 -0.0 278,915 + GFF966 0.61 -0.2 279,117 + GFF966 0.69 -1.6 279,118 - GFF966 0.69 -0.7 279,118 - GFF966 0.69 -0.5 279,172 + GFF966 0.71 -1.5 279,172 + GFF966 0.71 -1.0 279,173 - GFF966 0.71 -0.8 279,175 + GFF966 0.71 -1.9 279,175 + GFF966 0.71 -1.5 279,176 - GFF966 0.71 +0.5 279,176 - GFF966 0.71 +0.2 279,176 - GFF966 0.71 -0.8 279,226 - GFF966 0.73 -0.6 279,226 - GFF966 0.73 -1.6 279,226 - GFF966 0.73 +0.7 279,256 - GFF966 0.74 -2.3 279,378 + GFF966 0.79 -1.6 279,378 + GFF966 0.79 -0.6 279,379 - GFF966 0.79 -1.5 279,379 - GFF966 0.79 -1.3 279,411 + GFF966 0.80 -0.5 279,411 + GFF966 0.80 -0.0 279,411 + GFF966 0.80 -1.3 279,412 - GFF966 0.80 +0.8 279,695 + -1.4 279,696 - +0.2 279,696 - -1.3 279,728 - -0.8 279,735 + -0.5 279,921 + -0.5 279,921 + +0.6 279,921 + -0.7 279,921 + +0.4 279,921 + -0.8 279,921 + -0.1 279,922 - +1.0 279,922 - +0.7 279,984 + +0.3 279,984 + -0.3 279,988 + -1.4 279,988 + +0.0 279,988 + +0.3 279,988 + -0.5 279,988 + -0.9 279,988 + -1.0 279,988 + -0.2 279,988 + -0.0 279,988 + -0.5 279,988 + -2.8 279,988 + -0.2 279,989 - -2.3 279,989 - +0.3 279,989 - -0.3 279,989 - +0.0 279,989 - -0.0 279,989 - -0.2 279,989 - +0.0 279,989 - -0.5 279,989 - -0.4 279,989 - -0.5 279,989 - -1.5 279,989 - +0.5 279,989 - -0.7 279,989 - +0.3 279,989 - -0.7 279,989 - +0.3 279,989 - -0.8 279,989 - -0.0 279,989 - -0.8 279,989 - -1.0 280,038 - +0.4 280,053 - -0.5 280,053 - -1.3 280,056 + -0.1 280,056 + -0.8 280,058 + -0.1 280,058 + -0.7 280,058 + -1.0 280,059 + -0.8 280,059 - -0.2 280,086 + -0.3 280,086 + +1.1 280,086 + +0.0 280,086 + -0.3 280,086 + +0.1 280,087 - -0.8 280,087 - -0.2 280,094 + +1.0 280,094 + -0.6 280,095 - -1.4 280,095 - -0.7 280,095 - -0.3 280,095 - -0.1 280,095 - -0.5 280,095 - -0.2 280,095 - +0.3 280,095 - -0.9 280,114 - -2.0 280,325 + -0.5 280,325 + +0.5 280,325 + -3.5 280,325 + -0.5 280,325 + +0.5 280,326 - -1.0 280,326 - -1.8 280,326 - -1.3 280,326 - -1.3 280,400 + -0.8 280,400 + -2.0 280,400 + -1.2 280,400 + +0.5 280,400 + -1.5 280,401 - -1.0 280,401 - -0.0 280,401 - -0.6 280,401 - -0.8 280,401 - -0.8 280,401 - -0.8 280,401 - +1.0 280,574 + GFF967 0.16 -0.8 280,574 + GFF967 0.16 +2.5 280,574 + GFF967 0.16 -1.5 280,574 + GFF967 0.16 -1.0 280,574 + GFF967 0.16 -0.2 280,574 + GFF967 0.16 +0.2 280,574 + GFF967 0.16 -1.5 280,574 + GFF967 0.16 -1.0 280,574 + GFF967 0.16 -0.4 280,574 + GFF967 0.16 +0.5 280,574 + GFF967 0.16 -1.0 280,574 + GFF967 0.16 -0.3 280,575 - GFF967 0.16 -0.9 280,575 - GFF967 0.16 -0.8 280,575 - GFF967 0.16 -1.6 280,575 - GFF967 0.16 +0.8 280,575 - GFF967 0.16 -1.0 280,575 - GFF967 0.16 -0.8 280,575 - GFF967 0.16 -1.6 280,604 + GFF967 0.17 -1.6 280,604 + GFF967 0.17 -0.8 280,604 + GFF967 0.17 -0.3 280,604 + GFF967 0.17 +1.5 280,604 + GFF967 0.17 -0.5 280,604 + GFF967 0.17 -0.6 280,604 + GFF967 0.17 -0.3 280,604 + GFF967 0.17 -0.2 280,605 - GFF967 0.17 +0.1 280,605 - GFF967 0.17 +0.5 280,605 - GFF967 0.17 -1.3 280,605 - GFF967 0.17 -0.5 280,616 + GFF967 0.18 -0.0 280,769 + GFF967 0.24 -0.5 280,769 + GFF967 0.24 +2.1 280,769 + GFF967 0.24 -0.6 280,769 + GFF967 0.24 -0.5 280,769 + GFF967 0.24 -1.3 280,769 + GFF967 0.24 +1.5 280,769 + GFF967 0.24 -0.0 280,770 - GFF967 0.24 -0.3 280,770 - GFF967 0.24 -0.8 280,770 - GFF967 0.24 -1.3 280,770 - GFF967 0.24 -1.0 280,770 - GFF967 0.24 +0.1 280,790 + GFF967 0.24 -2.0 280,790 + GFF967 0.24 -1.9 280,790 + GFF967 0.24 -1.2 280,790 + GFF967 0.24 -1.3 280,790 + GFF967 0.24 +0.1 280,790 + GFF967 0.24 -1.6 280,790 + GFF967 0.24 -2.0 280,790 + GFF967 0.24 -0.8 280,791 - GFF967 0.24 -0.5
Or see this region's nucleotide sequence