Strain Fitness in Variovorax sp. SCN45 around GFF959

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF957 and GFF958 are separated by 135 nucleotidesGFF958 and GFF959 are separated by 51 nucleotidesGFF959 and GFF960 are separated by 20 nucleotides GFF957 - Aminobutyraldehyde dehydrogenase (EC 1.2.1.19), at 268,869 to 269,978 GFF957 GFF958 - ElaB protein, at 270,114 to 270,410 GFF958 GFF959 - Phage holin, at 270,462 to 271,187 GFF959 GFF960 - Dihydroorotate dehydrogenase (quinone) (EC 1.3.5.2), at 271,208 to 272,287 GFF960 Position (kb) 270 271 272Strain fitness (log2 ratio) -2 -1 0 1at 269.538 kb on + strand, within GFF957at 269.538 kb on + strand, within GFF957at 269.538 kb on + strand, within GFF957at 269.538 kb on + strand, within GFF957at 269.538 kb on + strand, within GFF957at 269.538 kb on + strand, within GFF957at 269.538 kb on + strand, within GFF957at 269.539 kb on - strand, within GFF957at 269.539 kb on - strand, within GFF957at 269.539 kb on - strand, within GFF957at 269.539 kb on - strand, within GFF957at 269.556 kb on + strand, within GFF957at 269.556 kb on + strand, within GFF957at 269.556 kb on + strand, within GFF957at 269.556 kb on + strand, within GFF957at 269.556 kb on + strand, within GFF957at 269.556 kb on + strand, within GFF957at 269.556 kb on + strand, within GFF957at 269.556 kb on + strand, within GFF957at 269.556 kb on + strand, within GFF957at 269.556 kb on + strand, within GFF957at 269.556 kb on + strand, within GFF957at 269.556 kb on + strand, within GFF957at 269.556 kb on + strand, within GFF957at 269.556 kb on + strand, within GFF957at 269.556 kb on + strand, within GFF957at 269.556 kb on + strand, within GFF957at 269.556 kb on + strand, within GFF957at 269.556 kb on + strand, within GFF957at 269.556 kb on + strand, within GFF957at 269.556 kb on + strand, within GFF957at 269.557 kb on - strand, within GFF957at 269.557 kb on - strand, within GFF957at 269.557 kb on - strand, within GFF957at 269.557 kb on - strand, within GFF957at 269.557 kb on - strand, within GFF957at 269.557 kb on - strand, within GFF957at 269.557 kb on - strand, within GFF957at 269.557 kb on - strand, within GFF957at 269.557 kb on - strand, within GFF957at 269.557 kb on - strand, within GFF957at 269.736 kb on + strand, within GFF957at 269.736 kb on + strand, within GFF957at 269.736 kb on + strand, within GFF957at 269.736 kb on + strand, within GFF957at 269.736 kb on + strand, within GFF957at 269.736 kb on + strand, within GFF957at 269.737 kb on - strand, within GFF957at 269.737 kb on - strand, within GFF957at 269.737 kb on - strand, within GFF957at 269.737 kb on - strand, within GFF957at 269.737 kb on - strand, within GFF957at 269.737 kb on - strand, within GFF957at 269.737 kb on - strand, within GFF957at 269.737 kb on - strand, within GFF957at 269.737 kb on - strand, within GFF957at 269.737 kb on - strand, within GFF957at 269.754 kb on + strand, within GFF957at 269.754 kb on + strand, within GFF957at 269.754 kb on + strand, within GFF957at 269.754 kb on + strand, within GFF957at 269.755 kb on - strand, within GFF957at 269.755 kb on - strand, within GFF957at 269.755 kb on - strand, within GFF957at 269.783 kb on + strand, within GFF957at 269.783 kb on + strand, within GFF957at 269.783 kb on + strand, within GFF957at 269.783 kb on + strand, within GFF957at 269.783 kb on + strand, within GFF957at 269.784 kb on - strand, within GFF957at 269.784 kb on - strand, within GFF957at 269.784 kb on - strand, within GFF957at 269.784 kb on - strand, within GFF957at 269.784 kb on - strand, within GFF957at 269.793 kb on + strand, within GFF957at 269.985 kb on + strandat 270.039 kb on + strandat 270.039 kb on + strandat 270.039 kb on + strandat 270.039 kb on + strandat 270.039 kb on + strandat 270.039 kb on + strandat 270.039 kb on + strandat 270.040 kb on - strandat 270.040 kb on - strandat 270.040 kb on - strandat 270.040 kb on - strandat 270.050 kb on + strandat 270.050 kb on + strandat 270.050 kb on + strandat 270.050 kb on + strandat 270.050 kb on + strandat 270.050 kb on + strandat 270.050 kb on + strandat 270.050 kb on + strandat 270.050 kb on + strandat 270.050 kb on + strandat 270.050 kb on + strandat 270.050 kb on + strandat 270.051 kb on - strandat 270.051 kb on - strandat 270.051 kb on - strandat 270.051 kb on - strandat 270.051 kb on - strandat 270.051 kb on - strandat 270.051 kb on - strandat 270.051 kb on - strandat 270.134 kb on - strandat 270.327 kb on + strand, within GFF958at 270.327 kb on + strand, within GFF958at 270.327 kb on + strand, within GFF958at 270.327 kb on + strand, within GFF958at 270.328 kb on - strand, within GFF958at 270.328 kb on - strand, within GFF958at 270.328 kb on - strand, within GFF958at 270.328 kb on - strand, within GFF958at 270.328 kb on - strand, within GFF958at 270.696 kb on + strand, within GFF959at 270.697 kb on - strand, within GFF959at 271.287 kb on + strandat 271.287 kb on + strandat 271.287 kb on + strandat 271.287 kb on + strandat 271.288 kb on - strandat 271.776 kb on + strand, within GFF960at 271.776 kb on + strand, within GFF960at 271.776 kb on + strand, within GFF960at 271.777 kb on - strand, within GFF960at 272.154 kb on + strand, within GFF960at 272.155 kb on - strand, within GFF960

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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269,538 + GFF957 0.60 +0.1
269,538 + GFF957 0.60 -1.0
269,538 + GFF957 0.60 -0.3
269,538 + GFF957 0.60 -0.6
269,538 + GFF957 0.60 -0.0
269,538 + GFF957 0.60 +0.2
269,538 + GFF957 0.60 -1.3
269,539 - GFF957 0.60 -0.6
269,539 - GFF957 0.60 +0.3
269,539 - GFF957 0.60 +0.7
269,539 - GFF957 0.60 +0.1
269,556 + GFF957 0.62 +0.1
269,556 + GFF957 0.62 +0.3
269,556 + GFF957 0.62 -0.9
269,556 + GFF957 0.62 +0.8
269,556 + GFF957 0.62 +0.0
269,556 + GFF957 0.62 -0.0
269,556 + GFF957 0.62 -0.6
269,556 + GFF957 0.62 -0.2
269,556 + GFF957 0.62 +0.1
269,556 + GFF957 0.62 -0.4
269,556 + GFF957 0.62 +0.9
269,556 + GFF957 0.62 -0.6
269,556 + GFF957 0.62 -0.2
269,556 + GFF957 0.62 -0.2
269,556 + GFF957 0.62 -0.5
269,556 + GFF957 0.62 -0.0
269,556 + GFF957 0.62 +0.3
269,556 + GFF957 0.62 +0.1
269,556 + GFF957 0.62 +0.2
269,556 + GFF957 0.62 +0.7
269,557 - GFF957 0.62 +0.8
269,557 - GFF957 0.62 +0.1
269,557 - GFF957 0.62 -1.0
269,557 - GFF957 0.62 -0.0
269,557 - GFF957 0.62 +0.3
269,557 - GFF957 0.62 -0.3
269,557 - GFF957 0.62 -0.1
269,557 - GFF957 0.62 -0.3
269,557 - GFF957 0.62 -1.4
269,557 - GFF957 0.62 -1.0
269,736 + GFF957 0.78 -0.1
269,736 + GFF957 0.78 +0.0
269,736 + GFF957 0.78 +0.4
269,736 + GFF957 0.78 -0.3
269,736 + GFF957 0.78 -0.5
269,736 + GFF957 0.78 +0.5
269,737 - GFF957 0.78 -1.3
269,737 - GFF957 0.78 +0.8
269,737 - GFF957 0.78 -0.8
269,737 - GFF957 0.78 -0.2
269,737 - GFF957 0.78 -0.9
269,737 - GFF957 0.78 -0.3
269,737 - GFF957 0.78 -0.3
269,737 - GFF957 0.78 -0.0
269,737 - GFF957 0.78 +1.1
269,737 - GFF957 0.78 +0.4
269,754 + GFF957 0.80 -1.3
269,754 + GFF957 0.80 +1.5
269,754 + GFF957 0.80 -2.2
269,754 + GFF957 0.80 +0.0
269,755 - GFF957 0.80 +0.5
269,755 - GFF957 0.80 -0.3
269,755 - GFF957 0.80 +0.2
269,783 + GFF957 0.82 -0.6
269,783 + GFF957 0.82 -0.6
269,783 + GFF957 0.82 -0.8
269,783 + GFF957 0.82 -0.8
269,783 + GFF957 0.82 +1.2
269,784 - GFF957 0.82 +0.5
269,784 - GFF957 0.82 -0.5
269,784 - GFF957 0.82 -0.8
269,784 - GFF957 0.82 -0.6
269,784 - GFF957 0.82 +0.4
269,793 + GFF957 0.83 -0.2
269,985 + -0.6
270,039 + +0.2
270,039 + -0.5
270,039 + -0.5
270,039 + +0.6
270,039 + -0.7
270,039 + +0.5
270,039 + -0.2
270,040 - +0.8
270,040 - +0.7
270,040 - +0.2
270,040 - +0.2
270,050 + +0.2
270,050 + +0.8
270,050 + -0.3
270,050 + -0.0
270,050 + -0.1
270,050 + +0.3
270,050 + +0.0
270,050 + -0.3
270,050 + +0.2
270,050 + -0.4
270,050 + -0.0
270,050 + +0.5
270,051 - -0.3
270,051 - +0.8
270,051 - -0.2
270,051 - -0.6
270,051 - -1.1
270,051 - -0.6
270,051 - -0.2
270,051 - -0.5
270,134 - -0.4
270,327 + GFF958 0.72 +0.1
270,327 + GFF958 0.72 -0.9
270,327 + GFF958 0.72 -0.2
270,327 + GFF958 0.72 -0.9
270,328 - GFF958 0.72 +1.5
270,328 - GFF958 0.72 +0.7
270,328 - GFF958 0.72 -0.1
270,328 - GFF958 0.72 -1.8
270,328 - GFF958 0.72 +0.1
270,696 + GFF959 0.32 -0.5
270,697 - GFF959 0.32 -0.7
271,287 + +1.0
271,287 + -0.5
271,287 + -1.5
271,287 + -0.5
271,288 - -0.0
271,776 + GFF960 0.53 -1.3
271,776 + GFF960 0.53 -1.0
271,776 + GFF960 0.53 -1.5
271,777 - GFF960 0.53 -1.5
272,154 + GFF960 0.88 -1.0
272,155 - GFF960 0.88 -2.2

Or see this region's nucleotide sequence