Strain Fitness in Variovorax sp. SCN45 around GFF928

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF927 and GFF928 are separated by 155 nucleotidesGFF928 and GFF929 are separated by 160 nucleotidesGFF929 and GFF930 are separated by 27 nucleotides GFF927 - Acyl-CoA dehydrogenase, at 238,782 to 240,494 GFF927 GFF928 - tRNA-dihydrouridine(20/20a) synthase (EC 1.3.1.91), at 240,650 to 241,630 GFF928 GFF929 - Transcriptional regulator, IclR family, at 241,791 to 242,579 GFF929 GFF930 - Transcriptional regulator, GntR family, at 242,607 to 243,248 GFF930 Position (kb) 240 241 242Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 239.652 kb on + strand, within GFF927at 239.652 kb on + strand, within GFF927at 239.652 kb on + strand, within GFF927at 239.653 kb on - strand, within GFF927at 239.653 kb on - strand, within GFF927at 239.653 kb on - strand, within GFF927at 240.561 kb on + strandat 240.562 kb on + strandat 240.563 kb on - strandat 240.563 kb on - strandat 240.563 kb on - strandat 240.563 kb on - strandat 240.563 kb on - strandat 240.563 kb on - strandat 240.628 kb on + strandat 240.632 kb on + strandat 240.636 kb on - strandat 240.637 kb on + strandat 240.637 kb on + strandat 240.637 kb on + strandat 240.638 kb on - strandat 240.638 kb on - strandat 240.638 kb on - strandat 240.638 kb on - strandat 240.643 kb on + strandat 240.643 kb on + strandat 240.643 kb on + strandat 240.643 kb on + strandat 240.643 kb on + strandat 240.644 kb on - strandat 240.644 kb on - strandat 240.644 kb on - strandat 240.644 kb on - strandat 240.644 kb on - strandat 240.644 kb on - strandat 240.644 kb on - strandat 240.716 kb on + strandat 240.717 kb on - strandat 240.717 kb on - strandat 240.717 kb on - strandat 240.752 kb on + strand, within GFF928at 240.752 kb on + strand, within GFF928at 240.752 kb on + strand, within GFF928at 240.752 kb on + strand, within GFF928at 240.753 kb on - strand, within GFF928at 240.753 kb on - strand, within GFF928at 240.753 kb on - strand, within GFF928at 240.753 kb on - strand, within GFF928at 240.783 kb on + strand, within GFF928at 240.784 kb on - strand, within GFF928at 240.784 kb on - strand, within GFF928at 240.784 kb on - strand, within GFF928at 240.795 kb on + strand, within GFF928at 240.795 kb on + strand, within GFF928at 240.796 kb on - strand, within GFF928at 240.796 kb on - strand, within GFF928at 240.905 kb on + strand, within GFF928at 240.905 kb on + strand, within GFF928at 240.905 kb on + strand, within GFF928at 240.906 kb on - strand, within GFF928at 241.082 kb on + strand, within GFF928at 241.082 kb on + strand, within GFF928at 241.082 kb on + strand, within GFF928at 241.082 kb on + strand, within GFF928at 241.082 kb on + strand, within GFF928at 241.082 kb on + strand, within GFF928at 241.082 kb on + strand, within GFF928at 241.082 kb on + strand, within GFF928at 241.083 kb on - strand, within GFF928at 241.083 kb on - strand, within GFF928at 241.083 kb on - strand, within GFF928at 241.211 kb on + strand, within GFF928at 241.343 kb on + strand, within GFF928at 241.343 kb on + strand, within GFF928at 241.343 kb on + strand, within GFF928at 241.343 kb on + strand, within GFF928at 241.344 kb on - strand, within GFF928at 241.344 kb on - strand, within GFF928at 241.385 kb on + strand, within GFF928at 241.386 kb on - strand, within GFF928at 241.386 kb on - strand, within GFF928at 241.386 kb on - strand, within GFF928at 241.442 kb on + strand, within GFF928at 241.442 kb on + strand, within GFF928at 241.442 kb on + strand, within GFF928at 241.442 kb on + strand, within GFF928at 241.442 kb on + strand, within GFF928at 241.442 kb on + strand, within GFF928at 241.442 kb on + strand, within GFF928at 241.443 kb on - strand, within GFF928at 241.443 kb on - strand, within GFF928at 241.443 kb on - strand, within GFF928at 241.443 kb on - strand, within GFF928at 241.443 kb on - strand, within GFF928at 241.443 kb on - strand, within GFF928at 241.443 kb on - strand, within GFF928at 241.443 kb on - strand, within GFF928at 241.443 kb on - strand, within GFF928at 241.443 kb on - strand, within GFF928at 241.712 kb on + strandat 241.712 kb on + strandat 241.722 kb on + strandat 241.722 kb on + strandat 241.722 kb on + strandat 241.722 kb on + strandat 241.722 kb on + strandat 241.723 kb on - strandat 241.723 kb on - strandat 241.723 kb on - strandat 241.723 kb on - strandat 241.773 kb on + strandat 241.773 kb on + strandat 241.773 kb on + strandat 241.773 kb on + strandat 241.773 kb on + strandat 241.773 kb on + strandat 241.773 kb on + strandat 241.773 kb on + strandat 241.773 kb on + strandat 241.773 kb on + strandat 241.773 kb on + strandat 241.774 kb on - strandat 241.774 kb on - strandat 241.774 kb on - strandat 241.774 kb on - strandat 241.774 kb on - strandat 241.774 kb on - strandat 241.788 kb on + strandat 241.789 kb on - strandat 241.882 kb on + strand, within GFF929at 241.882 kb on + strand, within GFF929at 241.883 kb on - strand, within GFF929at 241.883 kb on - strand, within GFF929at 241.946 kb on + strand, within GFF929at 241.946 kb on + strand, within GFF929at 241.965 kb on + strand, within GFF929at 241.965 kb on + strand, within GFF929at 241.965 kb on + strand, within GFF929at 242.021 kb on + strand, within GFF929at 242.021 kb on + strand, within GFF929at 242.022 kb on - strand, within GFF929at 242.034 kb on + strand, within GFF929at 242.034 kb on + strand, within GFF929at 242.034 kb on + strand, within GFF929at 242.034 kb on + strand, within GFF929at 242.035 kb on - strand, within GFF929at 242.035 kb on - strand, within GFF929at 242.213 kb on + strand, within GFF929at 242.214 kb on - strand, within GFF929at 242.355 kb on + strand, within GFF929at 242.355 kb on + strand, within GFF929at 242.355 kb on + strand, within GFF929at 242.356 kb on - strand, within GFF929at 242.356 kb on - strand, within GFF929at 242.371 kb on - strand, within GFF929at 242.371 kb on - strand, within GFF929at 242.413 kb on + strand, within GFF929at 242.413 kb on + strand, within GFF929at 242.413 kb on + strand, within GFF929at 242.413 kb on + strand, within GFF929at 242.413 kb on + strand, within GFF929at 242.413 kb on + strand, within GFF929at 242.413 kb on + strand, within GFF929at 242.414 kb on - strand, within GFF929at 242.448 kb on + strand, within GFF929at 242.448 kb on + strand, within GFF929at 242.449 kb on - strand, within GFF929at 242.449 kb on - strand, within GFF929at 242.449 kb on - strand, within GFF929at 242.475 kb on + strand, within GFF929at 242.475 kb on + strand, within GFF929at 242.475 kb on + strand, within GFF929at 242.475 kb on + strand, within GFF929at 242.476 kb on - strand, within GFF929at 242.476 kb on - strand, within GFF929at 242.476 kb on - strand, within GFF929at 242.608 kb on + strandat 242.608 kb on + strandat 242.608 kb on + strandat 242.608 kb on + strandat 242.609 kb on - strandat 242.609 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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239,652 + GFF927 0.51 -0.3
239,652 + GFF927 0.51 +1.7
239,652 + GFF927 0.51 -1.0
239,653 - GFF927 0.51 -0.0
239,653 - GFF927 0.51 -0.4
239,653 - GFF927 0.51 -0.8
240,561 + +0.3
240,562 + -1.0
240,563 - -0.5
240,563 - -0.7
240,563 - -0.5
240,563 - -1.5
240,563 - +0.8
240,563 - -0.1
240,628 + -0.4
240,632 + -0.0
240,636 - -0.3
240,637 + -1.0
240,637 + -0.6
240,637 + +0.2
240,638 - -0.4
240,638 - -0.0
240,638 - +0.4
240,638 - -3.2
240,643 + -1.1
240,643 + +0.4
240,643 + -0.1
240,643 + +1.2
240,643 + -0.4
240,644 - +0.4
240,644 - -0.5
240,644 - -0.1
240,644 - +0.4
240,644 - +0.6
240,644 - +0.0
240,644 - -0.5
240,716 + -1.4
240,717 - +0.1
240,717 - -1.0
240,717 - +2.0
240,752 + GFF928 0.10 -0.6
240,752 + GFF928 0.10 -0.6
240,752 + GFF928 0.10 -0.5
240,752 + GFF928 0.10 -1.6
240,753 - GFF928 0.10 -0.6
240,753 - GFF928 0.10 +0.4
240,753 - GFF928 0.10 +0.2
240,753 - GFF928 0.10 -0.7
240,783 + GFF928 0.14 -0.5
240,784 - GFF928 0.14 +0.2
240,784 - GFF928 0.14 -0.9
240,784 - GFF928 0.14 +0.0
240,795 + GFF928 0.15 -1.0
240,795 + GFF928 0.15 +1.5
240,796 - GFF928 0.15 +0.7
240,796 - GFF928 0.15 -0.0
240,905 + GFF928 0.26 -0.2
240,905 + GFF928 0.26 +0.2
240,905 + GFF928 0.26 +0.7
240,906 - GFF928 0.26 +0.2
241,082 + GFF928 0.44 -0.3
241,082 + GFF928 0.44 +1.0
241,082 + GFF928 0.44 -0.9
241,082 + GFF928 0.44 -0.4
241,082 + GFF928 0.44 -0.1
241,082 + GFF928 0.44 -0.0
241,082 + GFF928 0.44 +0.1
241,082 + GFF928 0.44 -0.5
241,083 - GFF928 0.44 +0.2
241,083 - GFF928 0.44 -0.0
241,083 - GFF928 0.44 +1.5
241,211 + GFF928 0.57 -0.3
241,343 + GFF928 0.71 +0.1
241,343 + GFF928 0.71 +0.7
241,343 + GFF928 0.71 -0.3
241,343 + GFF928 0.71 -1.0
241,344 - GFF928 0.71 -0.2
241,344 - GFF928 0.71 -0.6
241,385 + GFF928 0.75 -0.4
241,386 - GFF928 0.75 -0.1
241,386 - GFF928 0.75 -0.4
241,386 - GFF928 0.75 +1.0
241,442 + GFF928 0.81 -0.9
241,442 + GFF928 0.81 -0.3
241,442 + GFF928 0.81 -1.2
241,442 + GFF928 0.81 -1.2
241,442 + GFF928 0.81 -0.0
241,442 + GFF928 0.81 +0.1
241,442 + GFF928 0.81 -0.2
241,443 - GFF928 0.81 -0.2
241,443 - GFF928 0.81 -0.0
241,443 - GFF928 0.81 +0.2
241,443 - GFF928 0.81 -0.8
241,443 - GFF928 0.81 +0.3
241,443 - GFF928 0.81 +0.5
241,443 - GFF928 0.81 -1.5
241,443 - GFF928 0.81 -1.5
241,443 - GFF928 0.81 +0.3
241,443 - GFF928 0.81 -0.0
241,712 + -0.4
241,712 + +0.9
241,722 + -1.1
241,722 + -0.7
241,722 + -0.8
241,722 + +1.5
241,722 + -0.2
241,723 - -1.5
241,723 - -1.4
241,723 - -0.6
241,723 - -0.6
241,773 + -1.0
241,773 + -0.6
241,773 + -0.8
241,773 + +0.0
241,773 + -0.3
241,773 + -1.9
241,773 + -0.7
241,773 + -0.2
241,773 + -0.1
241,773 + -1.3
241,773 + -0.5
241,774 - -0.4
241,774 - -0.0
241,774 - +0.2
241,774 - -0.8
241,774 - -0.3
241,774 - +0.6
241,788 + -0.4
241,789 - -0.1
241,882 + GFF929 0.12 -0.3
241,882 + GFF929 0.12 +0.5
241,883 - GFF929 0.12 -0.0
241,883 - GFF929 0.12 +0.2
241,946 + GFF929 0.20 -0.8
241,946 + GFF929 0.20 -0.9
241,965 + GFF929 0.22 +1.1
241,965 + GFF929 0.22 -0.2
241,965 + GFF929 0.22 +1.3
242,021 + GFF929 0.29 +0.0
242,021 + GFF929 0.29 -0.2
242,022 - GFF929 0.29 +0.1
242,034 + GFF929 0.31 -0.1
242,034 + GFF929 0.31 -0.1
242,034 + GFF929 0.31 +0.7
242,034 + GFF929 0.31 +1.0
242,035 - GFF929 0.31 +0.2
242,035 - GFF929 0.31 +0.5
242,213 + GFF929 0.53 +0.1
242,214 - GFF929 0.54 -0.6
242,355 + GFF929 0.71 -0.7
242,355 + GFF929 0.71 +0.3
242,355 + GFF929 0.71 +0.2
242,356 - GFF929 0.72 +0.5
242,356 - GFF929 0.72 -2.2
242,371 - GFF929 0.74 -0.1
242,371 - GFF929 0.74 -0.4
242,413 + GFF929 0.79 -1.3
242,413 + GFF929 0.79 -1.3
242,413 + GFF929 0.79 -0.0
242,413 + GFF929 0.79 +0.9
242,413 + GFF929 0.79 +1.0
242,413 + GFF929 0.79 +0.1
242,413 + GFF929 0.79 +0.6
242,414 - GFF929 0.79 +0.5
242,448 + GFF929 0.83 -0.1
242,448 + GFF929 0.83 -0.6
242,449 - GFF929 0.83 -0.2
242,449 - GFF929 0.83 +0.7
242,449 - GFF929 0.83 +2.1
242,475 + GFF929 0.87 +1.7
242,475 + GFF929 0.87 +0.4
242,475 + GFF929 0.87 -0.3
242,475 + GFF929 0.87 -0.5
242,476 - GFF929 0.87 +2.5
242,476 - GFF929 0.87 -1.5
242,476 - GFF929 0.87 -0.7
242,608 + +0.5
242,608 + +0.3
242,608 + -0.9
242,608 + -0.2
242,609 - +0.8
242,609 - +0.9

Or see this region's nucleotide sequence