Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7336 and GFF7337 are separated by 194 nucleotides GFF7337 and GFF7338 overlap by 8 nucleotides GFF7338 and GFF7339 overlap by 4 nucleotides
GFF7336 - Alkanesulfonate utilization operon LysR-family regulator Cbl, at 5,045 to 5,980
GFF7336
GFF7337 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 6,175 to 7,137
GFF7337
GFF7338 - ABC transporter, permease protein (cluster 10, nitrate/sulfonate/bicarbonate), at 7,130 to 7,957
GFF7338
GFF7339 - ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 7,954 to 8,781
GFF7339
Position (kb) 6
7
8 Strain fitness (log2 ratio) -2
-1
0
1 at 5.281 kb on - strand, within GFF7336 at 5.389 kb on - strand, within GFF7336 at 5.721 kb on + strand, within GFF7336 at 5.722 kb on - strand, within GFF7336 at 6.065 kb on - strand at 6.300 kb on - strand, within GFF7337 at 6.381 kb on - strand, within GFF7337 at 6.537 kb on - strand, within GFF7337 at 6.638 kb on + strand, within GFF7337 at 6.639 kb on - strand, within GFF7337 at 7.239 kb on + strand, within GFF7338 at 7.342 kb on - strand, within GFF7338 at 7.947 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 5,281 - GFF7336 0.25 +0.8 5,389 - GFF7336 0.37 -1.0 5,721 + GFF7336 0.72 -1.0 5,722 - GFF7336 0.72 +1.5 6,065 - +0.3 6,300 - GFF7337 0.13 -2.1 6,381 - GFF7337 0.21 -0.8 6,537 - GFF7337 0.38 -0.7 6,638 + GFF7337 0.48 -0.9 6,639 - GFF7337 0.48 -0.5 7,239 + GFF7338 0.13 -1.0 7,342 - GFF7338 0.26 -2.0 7,947 - -0.1
Or see this region's nucleotide sequence