Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF710 and GFF711 overlap by 4 nucleotides GFF711 and GFF712 overlap by 4 nucleotides GFF712 and GFF713 are separated by 27 nucleotides
GFF710 - Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1), at 768,537 to 769,481
GFF710
GFF711 - KEGG: ribose transport system permease protein, at 769,478 to 770,443
GFF711
GFF712 - ABC transporter, ATP-binding protein (cluster 2, ribose/xylose/arabinose/galactose) / ABC transporter, ATP-binding protein (cluster 2, ribose/xylose/arabinose/galactose), at 770,440 to 771,990
GFF712
GFF713 - Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.79), at 772,018 to 773,403
GFF713
Position (kb) 770
771
772 Strain fitness (log2 ratio) -1
0
1
2
3 at 769.463 kb on + strand at 769.464 kb on - strand at 769.509 kb on + strand at 769.509 kb on + strand at 769.509 kb on + strand at 769.509 kb on + strand at 769.509 kb on + strand at 769.510 kb on - strand at 769.510 kb on - strand at 769.510 kb on - strand at 769.510 kb on - strand at 769.510 kb on - strand at 769.510 kb on - strand at 769.755 kb on + strand, within GFF711 at 769.755 kb on + strand, within GFF711 at 769.756 kb on - strand, within GFF711 at 769.756 kb on - strand, within GFF711 at 769.968 kb on + strand, within GFF711 at 769.983 kb on + strand, within GFF711 at 769.983 kb on + strand, within GFF711 at 769.983 kb on + strand, within GFF711 at 769.984 kb on - strand, within GFF711 at 770.187 kb on + strand, within GFF711 at 770.187 kb on + strand, within GFF711 at 770.188 kb on - strand, within GFF711 at 770.188 kb on - strand, within GFF711 at 770.188 kb on - strand, within GFF711 at 770.370 kb on + strand at 770.370 kb on + strand at 770.370 kb on + strand at 770.370 kb on + strand at 770.371 kb on - strand at 770.371 kb on - strand at 770.630 kb on + strand, within GFF712 at 770.649 kb on - strand, within GFF712 at 770.649 kb on - strand, within GFF712 at 770.649 kb on - strand, within GFF712 at 771.368 kb on + strand, within GFF712 at 771.368 kb on + strand, within GFF712 at 771.368 kb on + strand, within GFF712 at 771.368 kb on + strand, within GFF712 at 771.368 kb on + strand, within GFF712 at 771.368 kb on + strand, within GFF712 at 771.368 kb on + strand, within GFF712 at 771.368 kb on + strand, within GFF712 at 771.368 kb on + strand, within GFF712 at 771.368 kb on + strand, within GFF712 at 771.369 kb on - strand, within GFF712 at 771.369 kb on - strand, within GFF712 at 771.369 kb on - strand, within GFF712 at 771.369 kb on - strand, within GFF712 at 771.369 kb on - strand, within GFF712 at 771.369 kb on - strand, within GFF712 at 771.369 kb on - strand, within GFF712 at 772.019 kb on + strand at 772.020 kb on - strand at 772.362 kb on - strand, within GFF713 at 772.844 kb on + strand, within GFF713 at 772.844 kb on + strand, within GFF713 at 772.845 kb on - strand, within GFF713 at 772.845 kb on - strand, within GFF713 at 772.845 kb on - strand, within GFF713 at 772.935 kb on + strand, within GFF713 at 772.935 kb on + strand, within GFF713
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 769,463 + -0.6 769,464 - -0.6 769,509 + -0.9 769,509 + -0.1 769,509 + +0.3 769,509 + +0.2 769,509 + -0.4 769,510 - -0.7 769,510 - +1.1 769,510 - +0.3 769,510 - -0.3 769,510 - +0.2 769,510 - +1.1 769,755 + GFF711 0.29 -0.0 769,755 + GFF711 0.29 -0.6 769,756 - GFF711 0.29 +0.3 769,756 - GFF711 0.29 -0.4 769,968 + GFF711 0.51 -0.8 769,983 + GFF711 0.52 -0.5 769,983 + GFF711 0.52 +0.1 769,983 + GFF711 0.52 +0.2 769,984 - GFF711 0.52 -0.9 770,187 + GFF711 0.73 -0.6 770,187 + GFF711 0.73 -0.6 770,188 - GFF711 0.73 +0.2 770,188 - GFF711 0.73 -0.2 770,188 - GFF711 0.73 -0.6 770,370 + -0.3 770,370 + -0.7 770,370 + -0.4 770,370 + -0.8 770,371 - +0.8 770,371 - -0.3 770,630 + GFF712 0.12 -0.1 770,649 - GFF712 0.13 +3.0 770,649 - GFF712 0.13 +0.4 770,649 - GFF712 0.13 +0.3 771,368 + GFF712 0.60 +0.2 771,368 + GFF712 0.60 -0.3 771,368 + GFF712 0.60 +0.5 771,368 + GFF712 0.60 -0.9 771,368 + GFF712 0.60 -0.3 771,368 + GFF712 0.60 +0.4 771,368 + GFF712 0.60 +0.1 771,368 + GFF712 0.60 -0.3 771,368 + GFF712 0.60 -0.3 771,368 + GFF712 0.60 +0.2 771,369 - GFF712 0.60 +0.4 771,369 - GFF712 0.60 -0.9 771,369 - GFF712 0.60 -0.5 771,369 - GFF712 0.60 -0.8 771,369 - GFF712 0.60 -0.3 771,369 - GFF712 0.60 -0.3 771,369 - GFF712 0.60 -0.1 772,019 + +0.2 772,020 - +0.2 772,362 - GFF713 0.25 +0.0 772,844 + GFF713 0.60 -0.9 772,844 + GFF713 0.60 +0.2 772,845 - GFF713 0.60 +3.2 772,845 - GFF713 0.60 +0.4 772,845 - GFF713 0.60 +0.4 772,935 + GFF713 0.66 -1.2 772,935 + GFF713 0.66 +0.3
Or see this region's nucleotide sequence