Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6961 and GFF6962 are separated by 13 nucleotides GFF6962 and GFF6963 are separated by 24 nucleotides GFF6963 and GFF6964 are separated by 9 nucleotides
GFF6961 - Cytochrome c oxidase (cbb3-type) subunit CcoP (EC 1.9.3.1), at 35,248 to 36,165
GFF6961
GFF6962 - Cytochrome c oxidase (cbb3-type) subunit CcoQ (EC 1.9.3.1), at 36,179 to 36,319
GFF6962
GFF6963 - Cytochrome c oxidase (cbb3-type) subunit CcoO (EC 1.9.3.1), at 36,344 to 36,973
GFF6963
GFF6964 - Cytochrome c oxidase (cbb3-type) subunit CcoN (EC 1.9.3.1), at 36,983 to 38,425
GFF6964
Position (kb) 36
37 Strain fitness (log2 ratio) -2
-1
0
1
2 at 35.553 kb on - strand, within GFF6961 at 35.553 kb on - strand, within GFF6961 at 35.667 kb on - strand, within GFF6961 at 35.816 kb on + strand, within GFF6961 at 35.871 kb on - strand, within GFF6961 at 36.131 kb on + strand at 36.375 kb on + strand at 36.376 kb on - strand at 36.528 kb on + strand, within GFF6963 at 36.528 kb on + strand, within GFF6963 at 36.600 kb on + strand, within GFF6963 at 36.750 kb on + strand, within GFF6963 at 36.768 kb on + strand, within GFF6963 at 37.087 kb on - strand at 37.117 kb on - strand at 37.155 kb on + strand, within GFF6964 at 37.156 kb on - strand, within GFF6964 at 37.156 kb on - strand, within GFF6964 at 37.308 kb on + strand, within GFF6964 at 37.308 kb on + strand, within GFF6964 at 37.308 kb on + strand, within GFF6964 at 37.309 kb on - strand, within GFF6964 at 37.330 kb on - strand, within GFF6964 at 37.636 kb on - strand, within GFF6964 at 37.665 kb on + strand, within GFF6964 at 37.665 kb on + strand, within GFF6964 at 37.665 kb on + strand, within GFF6964 at 37.666 kb on - strand, within GFF6964 at 37.666 kb on - strand, within GFF6964 at 37.743 kb on + strand, within GFF6964 at 37.743 kb on + strand, within GFF6964 at 37.744 kb on - strand, within GFF6964 at 37.744 kb on - strand, within GFF6964 at 37.744 kb on - strand, within GFF6964 at 37.744 kb on - strand, within GFF6964 at 37.744 kb on - strand, within GFF6964 at 37.746 kb on + strand, within GFF6964 at 37.746 kb on + strand, within GFF6964 at 37.747 kb on - strand, within GFF6964 at 37.747 kb on - strand, within GFF6964 at 37.749 kb on + strand, within GFF6964 at 37.749 kb on + strand, within GFF6964 at 37.750 kb on - strand, within GFF6964 at 37.750 kb on - strand, within GFF6964 at 37.750 kb on - strand, within GFF6964 at 37.839 kb on + strand, within GFF6964 at 37.926 kb on + strand, within GFF6964 at 37.926 kb on + strand, within GFF6964 at 37.927 kb on - strand, within GFF6964 at 37.945 kb on - strand, within GFF6964 at 37.945 kb on - strand, within GFF6964
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 35,553 - GFF6961 0.33 -0.7 35,553 - GFF6961 0.33 +0.0 35,667 - GFF6961 0.46 -0.0 35,816 + GFF6961 0.62 -0.2 35,871 - GFF6961 0.68 -0.5 36,131 + +0.2 36,375 + -1.5 36,376 - -0.0 36,528 + GFF6963 0.29 -0.9 36,528 + GFF6963 0.29 -0.7 36,600 + GFF6963 0.41 -0.8 36,750 + GFF6963 0.64 -0.7 36,768 + GFF6963 0.67 -0.9 37,087 - -0.5 37,117 - -0.2 37,155 + GFF6964 0.12 -0.2 37,156 - GFF6964 0.12 -0.2 37,156 - GFF6964 0.12 +1.6 37,308 + GFF6964 0.23 -0.5 37,308 + GFF6964 0.23 -1.5 37,308 + GFF6964 0.23 +1.8 37,309 - GFF6964 0.23 -0.6 37,330 - GFF6964 0.24 +0.4 37,636 - GFF6964 0.45 -0.8 37,665 + GFF6964 0.47 -0.0 37,665 + GFF6964 0.47 -0.2 37,665 + GFF6964 0.47 -0.6 37,666 - GFF6964 0.47 +0.3 37,666 - GFF6964 0.47 -0.3 37,743 + GFF6964 0.53 -0.4 37,743 + GFF6964 0.53 +0.4 37,744 - GFF6964 0.53 -0.0 37,744 - GFF6964 0.53 +0.0 37,744 - GFF6964 0.53 +0.2 37,744 - GFF6964 0.53 +0.1 37,744 - GFF6964 0.53 -0.8 37,746 + GFF6964 0.53 +0.8 37,746 + GFF6964 0.53 +0.0 37,747 - GFF6964 0.53 -1.1 37,747 - GFF6964 0.53 +0.2 37,749 + GFF6964 0.53 -0.2 37,749 + GFF6964 0.53 -0.2 37,750 - GFF6964 0.53 -0.9 37,750 - GFF6964 0.53 +0.1 37,750 - GFF6964 0.53 -1.8 37,839 + GFF6964 0.59 -0.3 37,926 + GFF6964 0.65 -0.4 37,926 + GFF6964 0.65 +1.6 37,927 - GFF6964 0.65 -0.6 37,945 - GFF6964 0.67 -0.0 37,945 - GFF6964 0.67 -0.3
Or see this region's nucleotide sequence