Strain Fitness in Variovorax sp. SCN45 around GFF6876

Experiment: no phage control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no phage control
7,785	+				+0.2
7,785	+				-1.6
7,785	+				+0.0
7,785	+				-0.2
7,785	+				-0.2
7,786	-				-1.2
7,786	-				-0.0
7,858	+				+0.0
7,859	-				-0.4
7,966	+		GFF6875	0.21	-2.1
7,967	-		GFF6875	0.21	-1.4
7,997	+		GFF6875	0.24	-1.6
7,998	-		GFF6875	0.24	-1.9
7,998	-		GFF6875	0.24	-2.9
7,998	-		GFF6875	0.24	-0.1
7,999	-		GFF6875	0.25	-1.2
8,018	+		GFF6875	0.27	-1.4
8,018	+		GFF6875	0.27	+1.4
8,018	+		GFF6875	0.27	-0.4
8,018	+		GFF6875	0.27	+0.8
8,018	+		GFF6875	0.27	-0.8
8,018	+		GFF6875	0.27	+2.2
8,019	-		GFF6875	0.27	-0.6
8,019	-		GFF6875	0.27	-1.2
8,019	-		GFF6875	0.27	-1.7
8,019	-		GFF6875	0.27	-1.5
8,155	+		GFF6875	0.41	-2.1
8,155	+		GFF6875	0.41	-0.2
8,156	-		GFF6875	0.41	-0.2
8,156	-		GFF6875	0.41	-0.8
8,156	-		GFF6875	0.41	-1.6
8,156	-		GFF6875	0.41	+0.3
8,156	-		GFF6875	0.41	-0.8
8,156	-		GFF6875	0.41	+1.0
8,161	+		GFF6875	0.42	-0.8
8,161	+		GFF6875	0.42	+0.8
8,161	+		GFF6875	0.42	-2.3
8,161	+		GFF6875	0.42	-1.0
8,161	+		GFF6875	0.42	-0.3
8,162	-		GFF6875	0.42	+0.0
8,162	-		GFF6875	0.42	-1.9
8,162	-		GFF6875	0.42	-1.6
8,162	-		GFF6875	0.42	+0.2
8,162	-		GFF6875	0.42	-0.5
8,234	+		GFF6875	0.49	-0.2
8,234	+		GFF6875	0.49	-1.2
8,235	-		GFF6875	0.50	-1.0
8,235	-		GFF6875	0.50	-0.9
8,582	+		GFF6875	0.86	-0.6
8,582	+		GFF6875	0.86	-0.4
8,582	+		GFF6875	0.86	-1.9
8,582	+		GFF6875	0.86	-1.1
8,583	-		GFF6875	0.86	-0.5
8,583	-		GFF6875	0.86	-1.4
8,620	+				+1.2
8,727	+				+0.6
8,727	+				+0.5
8,727	+				-0.5
8,727	+				-0.1
8,727	+				-0.1
8,727	+				-0.7
8,727	+				-0.2
8,727	+				-0.5
8,727	+				+1.2
8,727	+				+0.3
8,727	+				+0.6
8,727	+				-0.3
8,728	-				-0.4
8,728	-				-0.6
8,728	-				-1.2
8,728	-				-0.2
8,728	-				+0.2
8,728	-				-0.3
8,728	-				+0.1
8,728	-				+0.9
8,728	-				-0.1
8,728	-				-0.1
8,868	+		GFF6876	0.13	-0.6
8,868	+		GFF6876	0.13	-0.5
8,869	-		GFF6876	0.13	-2.6
8,869	-		GFF6876	0.13	+1.0
8,869	-		GFF6876	0.13	-1.0
8,869	-		GFF6876	0.13	-0.5
8,869	-		GFF6876	0.13	-0.5
8,869	-		GFF6876	0.13	+0.2
8,898	+		GFF6876	0.16	-2.0
8,899	-		GFF6876	0.16	-1.0
8,899	-		GFF6876	0.16	-0.6
8,973	+		GFF6876	0.22	-1.8
8,973	+		GFF6876	0.22	-0.9
8,973	+		GFF6876	0.22	-1.6
8,973	+		GFF6876	0.22	-0.8
8,973	+		GFF6876	0.22	-1.4
8,973	+		GFF6876	0.22	-1.3
8,974	-		GFF6876	0.23	-2.1
8,974	-		GFF6876	0.23	-0.3
8,974	-		GFF6876	0.23	-1.2
8,974	-		GFF6876	0.23	-0.7
8,982	+		GFF6876	0.23	-0.8
8,982	+		GFF6876	0.23	-0.7
8,982	+		GFF6876	0.23	-2.2
8,982	+		GFF6876	0.23	-0.8
8,982	+		GFF6876	0.23	-1.1
8,982	+		GFF6876	0.23	-0.7
8,982	+		GFF6876	0.23	-0.9
8,982	+		GFF6876	0.23	-1.2
8,983	-		GFF6876	0.23	-0.5
8,983	-		GFF6876	0.23	-0.6
8,983	-		GFF6876	0.23	-1.6
8,983	-		GFF6876	0.23	-0.6
8,983	-		GFF6876	0.23	-1.1
8,983	-		GFF6876	0.23	-0.4
8,983	-		GFF6876	0.23	-0.3
8,983	-		GFF6876	0.23	-0.8
8,983	-		GFF6876	0.23	-0.9
9,002	-		GFF6876	0.25	-0.4
9,002	-		GFF6876	0.25	-1.0
9,051	+		GFF6876	0.30	+0.5
9,051	+		GFF6876	0.30	+0.0
9,171	+		GFF6876	0.40	-1.4
9,171	+		GFF6876	0.40	-0.3
9,171	+		GFF6876	0.40	-1.2
9,171	+		GFF6876	0.40	-2.8
9,171	+		GFF6876	0.40	-1.5
9,171	+		GFF6876	0.40	-0.6
9,171	+		GFF6876	0.40	-0.4
9,171	+		GFF6876	0.40	-1.1
9,171	+		GFF6876	0.40	-1.6
9,171	+		GFF6876	0.40	-1.5
9,171	+		GFF6876	0.40	-0.8
9,171	+		GFF6876	0.40	-2.4
9,171	+		GFF6876	0.40	-1.9
9,171	+		GFF6876	0.40	-2.0
9,171	+		GFF6876	0.40	-0.2
9,171	+		GFF6876	0.40	+0.4
9,171	+		GFF6876	0.40	-0.7
9,171	+		GFF6876	0.40	-0.9
9,171	+		GFF6876	0.40	-1.0
9,171	+		GFF6876	0.40	-1.2
9,171	+		GFF6876	0.40	+0.1
9,171	+		GFF6876	0.40	-0.2
9,171	+		GFF6876	0.40	-0.2
9,171	+		GFF6876	0.40	+0.0
9,171	+		GFF6876	0.40	-0.5
9,172	-		GFF6876	0.41	-3.2
9,172	-		GFF6876	0.41	-1.2
9,172	-		GFF6876	0.41	-0.6
9,172	-		GFF6876	0.41	-2.7
9,172	-		GFF6876	0.41	-0.6
9,172	-		GFF6876	0.41	-1.9
9,172	-		GFF6876	0.41	-1.4
9,172	-		GFF6876	0.41	-1.0
9,172	-		GFF6876	0.41	-0.8
9,172	-		GFF6876	0.41	-1.5
9,172	-		GFF6876	0.41	-1.6
9,172	-		GFF6876	0.41	-2.1
9,172	-		GFF6876	0.41	-1.0
9,172	-		GFF6876	0.41	-1.4
9,172	-		GFF6876	0.41	-0.5
9,172	-		GFF6876	0.41	-1.4
9,172	-		GFF6876	0.41	-2.4
9,172	-		GFF6876	0.41	-1.8
9,189	+		GFF6876	0.42	-0.8
9,189	+		GFF6876	0.42	+0.4
9,189	+		GFF6876	0.42	-0.6
9,189	+		GFF6876	0.42	-0.6
9,189	+		GFF6876	0.42	-1.3
9,189	+		GFF6876	0.42	-0.6
9,189	+		GFF6876	0.42	-1.6
9,190	-		GFF6876	0.42	-1.5
9,190	-		GFF6876	0.42	-0.2
9,282	+		GFF6876	0.50	-0.9
9,429	+		GFF6876	0.64	-2.6
9,457	+		GFF6876	0.66	-0.8
9,457	+		GFF6876	0.66	-1.4
9,501	+		GFF6876	0.70	-1.6
9,501	+		GFF6876	0.70	-2.6
9,501	+		GFF6876	0.70	-0.7
9,501	+		GFF6876	0.70	-1.0
9,501	+		GFF6876	0.70	-0.2
9,501	+		GFF6876	0.70	-1.2
9,501	+		GFF6876	0.70	-0.2
9,501	+		GFF6876	0.70	+0.1
9,501	+		GFF6876	0.70	-1.3
9,501	+		GFF6876	0.70	+1.4
9,501	+		GFF6876	0.70	-1.0
9,501	+		GFF6876	0.70	-0.9
9,501	+		GFF6876	0.70	-1.4
9,501	+		GFF6876	0.70	-1.5
9,501	+		GFF6876	0.70	-0.1
9,502	-		GFF6876	0.70	-2.2
9,502	-		GFF6876	0.70	+0.2
9,502	-		GFF6876	0.70	-2.4
9,502	-		GFF6876	0.70	-0.4
9,502	-		GFF6876	0.70	+0.1
9,502	-		GFF6876	0.70	+0.2
9,502	-		GFF6876	0.70	-1.0
9,502	-		GFF6876	0.70	+0.4
9,502	-		GFF6876	0.70	-1.9
9,502	-		GFF6876	0.70	+0.2
9,502	-		GFF6876	0.70	-0.5
9,502	-		GFF6876	0.70	-1.6
9,502	-		GFF6876	0.70	-1.9
9,571	-		GFF6876	0.77	-0.2
9,687	+		GFF6876	0.87	-2.9
9,688	-		GFF6876	0.87	-1.2
10,051	-				-1.8
10,121	-				-0.9
10,121	-				+0.2
10,126	+				-0.8
10,126	+				-3.4
10,126	+				+0.6
10,127	-				-1.8
10,129	+				+0.0
10,129	+				-0.2
10,129	+				-0.8
10,256	+				-2.3
10,256	+				-1.9
10,332	+				-1.1
10,332	+				-1.8
10,332	+				-1.1
10,332	+				-1.6
10,333	-				-1.0
10,333	-				-1.1
10,335	+				-0.4
10,335	+				-0.2
10,336	-				-1.2
10,336	-				-0.8
10,336	-				-0.8
10,336	-				-0.0
10,346	+				-1.4
10,347	-				-0.3
10,347	-				-0.5
10,353	+				+1.8
10,354	-				-0.7
10,358	-				+1.2
10,437	+				-1.6
10,437	+				-1.5
10,437	+				+0.4
10,437	+				+0.0
10,437	+				-1.0
10,437	+				-0.8
10,437	+				-0.8
10,437	+				+0.5
10,437	+				+0.2
10,438	-				-1.4
10,438	-				-1.8
10,438	-				-0.3
10,438	-				+0.1
10,442	+				-1.5
10,504	+		GFF6878	0.13	-1.0
10,504	+		GFF6878	0.13	-0.6
10,504	+		GFF6878	0.13	-0.8
10,504	+		GFF6878	0.13	-2.4
10,504	+		GFF6878	0.13	-1.4
10,505	-		GFF6878	0.13	-0.3
10,505	-		GFF6878	0.13	-2.0
10,505	-		GFF6878	0.13	+0.0
10,505	-		GFF6878	0.13	-0.3
10,505	-		GFF6878	0.13	-1.4
10,535	+		GFF6878	0.15	-1.2
10,535	+		GFF6878	0.15	-1.0
10,536	-		GFF6878	0.15	-0.6
10,536	-		GFF6878	0.15	-0.3
10,536	-		GFF6878	0.15	+1.2
10,557	-		GFF6878	0.16	-1.1
10,596	-		GFF6878	0.19	-2.0
10,659	+		GFF6878	0.23	-1.8
10,660	-		GFF6878	0.23	-1.7
10,684	+		GFF6878	0.24	-0.5
10,750	+		GFF6878	0.28	-1.7
10,750	+		GFF6878	0.28	+0.5
10,750	+		GFF6878	0.28	-2.3
10,750	+		GFF6878	0.28	-1.3
10,751	-		GFF6878	0.28	-1.7
10,757	+		GFF6878	0.29	-0.1
10,757	+		GFF6878	0.29	-0.7
10,757	+		GFF6878	0.29	-0.1
10,758	-		GFF6878	0.29	-1.8
10,758	-		GFF6878	0.29	-2.2
10,758	-		GFF6878	0.29	-0.8
10,758	-		GFF6878	0.29	-1.2
10,758	-		GFF6878	0.29	-0.4
10,758	-		GFF6878	0.29	-1.1
10,758	-		GFF6878	0.29	-1.2
10,758	-		GFF6878	0.29	-0.6
10,758	-		GFF6878	0.29	+0.2
10,797	+		GFF6878	0.31	+0.8
10,797	+		GFF6878	0.31	-1.4
10,797	+		GFF6878	0.31	+0.5
10,797	+		GFF6878	0.31	-1.6
10,797	+		GFF6878	0.31	-1.9
10,797	+		GFF6878	0.31	-0.4
10,797	+		GFF6878	0.31	-1.6
10,797	+		GFF6878	0.31	-0.8
10,797	+		GFF6878	0.31	-0.3
10,797	+		GFF6878	0.31	-2.6
10,797	+		GFF6878	0.31	-1.4
10,797	+		GFF6878	0.31	-1.8
10,797	+		GFF6878	0.31	-2.5
10,797	+		GFF6878	0.31	-0.2
10,797	+		GFF6878	0.31	-0.5
10,798	-		GFF6878	0.31	-1.1
10,798	-		GFF6878	0.31	-0.3
10,798	-		GFF6878	0.31	-1.3
10,798	-		GFF6878	0.31	-1.5
10,798	-		GFF6878	0.31	-1.2
10,798	-		GFF6878	0.31	-1.4
10,798	-		GFF6878	0.31	-1.2