Strain Fitness in Variovorax sp. SCN45 around GFF6839

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6838 and GFF6839 are separated by 123 nucleotidesGFF6839 and GFF6840 are separated by 112 nucleotidesGFF6840 and GFF6841 are separated by 74 nucleotides GFF6838 - BUG/TctC family periplasmic protein, at 22,230 to 23,222 GFF6838 GFF6839 - hypothetical protein, at 23,346 to 24,131 GFF6839 GFF6840 - Putative transmembrane protein, at 24,244 to 24,915 GFF6840 GFF6841 - hypothetical protein, at 24,990 to 25,487 GFF6841 Position (kb) 23 24 25Strain fitness (log2 ratio) -2 -1 0 1at 22.465 kb on + strand, within GFF6838at 22.466 kb on - strand, within GFF6838at 22.508 kb on - strand, within GFF6838at 22.651 kb on + strand, within GFF6838at 22.651 kb on + strand, within GFF6838at 22.651 kb on + strand, within GFF6838at 22.651 kb on + strand, within GFF6838at 22.651 kb on + strand, within GFF6838at 22.652 kb on - strand, within GFF6838at 22.652 kb on - strand, within GFF6838at 22.652 kb on - strand, within GFF6838at 22.693 kb on + strand, within GFF6838at 22.693 kb on + strand, within GFF6838at 22.693 kb on + strand, within GFF6838at 22.694 kb on - strand, within GFF6838at 22.694 kb on - strand, within GFF6838at 22.694 kb on - strand, within GFF6838at 22.694 kb on - strand, within GFF6838at 22.694 kb on - strand, within GFF6838at 22.694 kb on - strand, within GFF6838at 22.694 kb on - strand, within GFF6838at 22.694 kb on - strand, within GFF6838at 22.694 kb on - strand, within GFF6838at 22.694 kb on - strand, within GFF6838at 22.825 kb on + strand, within GFF6838at 22.825 kb on + strand, within GFF6838at 22.825 kb on + strand, within GFF6838at 22.826 kb on - strand, within GFF6838at 22.826 kb on - strand, within GFF6838at 22.826 kb on - strand, within GFF6838at 22.888 kb on + strand, within GFF6838at 22.888 kb on + strand, within GFF6838at 22.888 kb on + strand, within GFF6838at 22.888 kb on + strand, within GFF6838at 22.889 kb on - strand, within GFF6838at 22.889 kb on - strand, within GFF6838at 22.909 kb on + strand, within GFF6838at 22.909 kb on + strand, within GFF6838at 22.909 kb on + strand, within GFF6838at 22.909 kb on + strand, within GFF6838at 22.909 kb on + strand, within GFF6838at 22.910 kb on - strand, within GFF6838at 22.910 kb on - strand, within GFF6838at 22.910 kb on - strand, within GFF6838at 22.910 kb on - strand, within GFF6838at 22.910 kb on - strand, within GFF6838at 22.910 kb on - strand, within GFF6838at 22.910 kb on - strand, within GFF6838at 22.936 kb on + strand, within GFF6838at 22.937 kb on - strand, within GFF6838at 23.216 kb on + strandat 23.216 kb on + strandat 23.217 kb on - strandat 23.318 kb on + strandat 23.318 kb on + strandat 23.367 kb on + strandat 23.416 kb on + strandat 23.416 kb on + strandat 23.417 kb on - strandat 23.417 kb on - strandat 23.424 kb on + strandat 23.424 kb on + strandat 23.425 kb on - strand, within GFF6839at 23.708 kb on - strand, within GFF6839at 24.058 kb on + strandat 24.058 kb on + strandat 24.059 kb on - strandat 24.059 kb on - strandat 24.059 kb on - strandat 24.210 kb on - strandat 24.264 kb on + strandat 24.302 kb on + strandat 24.302 kb on + strandat 24.302 kb on + strandat 24.302 kb on + strandat 24.302 kb on + strandat 24.303 kb on - strandat 24.401 kb on + strand, within GFF6840at 24.401 kb on + strand, within GFF6840at 24.402 kb on - strand, within GFF6840at 24.402 kb on - strand, within GFF6840at 24.416 kb on + strand, within GFF6840at 24.417 kb on - strand, within GFF6840at 24.417 kb on - strand, within GFF6840at 24.479 kb on + strand, within GFF6840at 24.479 kb on + strand, within GFF6840at 24.479 kb on + strand, within GFF6840at 24.480 kb on - strand, within GFF6840at 24.480 kb on - strand, within GFF6840at 24.480 kb on - strand, within GFF6840at 24.482 kb on + strand, within GFF6840at 24.482 kb on + strand, within GFF6840at 24.482 kb on + strand, within GFF6840at 24.483 kb on - strand, within GFF6840at 24.494 kb on + strand, within GFF6840at 24.494 kb on + strand, within GFF6840at 24.495 kb on - strand, within GFF6840at 24.752 kb on + strand, within GFF6840at 24.752 kb on + strand, within GFF6840at 24.753 kb on - strand, within GFF6840at 24.753 kb on - strand, within GFF6840at 25.009 kb on + strandat 25.009 kb on + strandat 25.009 kb on + strandat 25.009 kb on + strandat 25.009 kb on + strandat 25.009 kb on + strandat 25.009 kb on + strandat 25.009 kb on + strandat 25.009 kb on + strandat 25.010 kb on - strandat 25.010 kb on - strandat 25.041 kb on + strand, within GFF6841at 25.041 kb on + strand, within GFF6841at 25.042 kb on - strand, within GFF6841

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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22,465 + GFF6838 0.24 -0.3
22,466 - GFF6838 0.24 -0.5
22,508 - GFF6838 0.28 -1.2
22,651 + GFF6838 0.42 -0.2
22,651 + GFF6838 0.42 +1.1
22,651 + GFF6838 0.42 -0.0
22,651 + GFF6838 0.42 +1.4
22,651 + GFF6838 0.42 +0.1
22,652 - GFF6838 0.42 +0.1
22,652 - GFF6838 0.42 +0.4
22,652 - GFF6838 0.42 +0.2
22,693 + GFF6838 0.47 -0.7
22,693 + GFF6838 0.47 -0.1
22,693 + GFF6838 0.47 +0.2
22,694 - GFF6838 0.47 -0.7
22,694 - GFF6838 0.47 -0.0
22,694 - GFF6838 0.47 -0.1
22,694 - GFF6838 0.47 -2.2
22,694 - GFF6838 0.47 -0.6
22,694 - GFF6838 0.47 -1.1
22,694 - GFF6838 0.47 -0.4
22,694 - GFF6838 0.47 +0.4
22,694 - GFF6838 0.47 +1.0
22,694 - GFF6838 0.47 +0.5
22,825 + GFF6838 0.60 +0.2
22,825 + GFF6838 0.60 +0.4
22,825 + GFF6838 0.60 -0.2
22,826 - GFF6838 0.60 +0.5
22,826 - GFF6838 0.60 +0.0
22,826 - GFF6838 0.60 -0.4
22,888 + GFF6838 0.66 +0.0
22,888 + GFF6838 0.66 +1.7
22,888 + GFF6838 0.66 +0.9
22,888 + GFF6838 0.66 -0.6
22,889 - GFF6838 0.66 -0.5
22,889 - GFF6838 0.66 -0.1
22,909 + GFF6838 0.68 -0.5
22,909 + GFF6838 0.68 +0.1
22,909 + GFF6838 0.68 -2.0
22,909 + GFF6838 0.68 -1.8
22,909 + GFF6838 0.68 -1.5
22,910 - GFF6838 0.68 -0.3
22,910 - GFF6838 0.68 -1.8
22,910 - GFF6838 0.68 +0.0
22,910 - GFF6838 0.68 +0.2
22,910 - GFF6838 0.68 +0.1
22,910 - GFF6838 0.68 +1.0
22,910 - GFF6838 0.68 +1.0
22,936 + GFF6838 0.71 -1.7
22,937 - GFF6838 0.71 +0.5
23,216 + -0.3
23,216 + +0.4
23,217 - -1.2
23,318 + -0.2
23,318 + +0.1
23,367 + -0.7
23,416 + -0.9
23,416 + -0.5
23,417 - +0.9
23,417 - +1.6
23,424 + +0.4
23,424 + +1.4
23,425 - GFF6839 0.10 -1.0
23,708 - GFF6839 0.46 -0.5
24,058 + -1.2
24,058 + -0.3
24,059 - -1.6
24,059 - +0.9
24,059 - -0.5
24,210 - -0.2
24,264 + +0.0
24,302 + +0.8
24,302 + +0.1
24,302 + +0.5
24,302 + -0.6
24,302 + -0.5
24,303 - +0.2
24,401 + GFF6840 0.23 +0.3
24,401 + GFF6840 0.23 -1.3
24,402 - GFF6840 0.24 +0.4
24,402 - GFF6840 0.24 -0.1
24,416 + GFF6840 0.26 -0.4
24,417 - GFF6840 0.26 -0.6
24,417 - GFF6840 0.26 -0.5
24,479 + GFF6840 0.35 +0.1
24,479 + GFF6840 0.35 -0.5
24,479 + GFF6840 0.35 -0.2
24,480 - GFF6840 0.35 -0.8
24,480 - GFF6840 0.35 -0.3
24,480 - GFF6840 0.35 -1.4
24,482 + GFF6840 0.35 -0.2
24,482 + GFF6840 0.35 +0.5
24,482 + GFF6840 0.35 +1.4
24,483 - GFF6840 0.36 -0.3
24,494 + GFF6840 0.37 -0.6
24,494 + GFF6840 0.37 +0.0
24,495 - GFF6840 0.37 +0.2
24,752 + GFF6840 0.76 -0.2
24,752 + GFF6840 0.76 +0.6
24,753 - GFF6840 0.76 +0.0
24,753 - GFF6840 0.76 -0.2
25,009 + +0.1
25,009 + -0.1
25,009 + +0.0
25,009 + -0.0
25,009 + -1.0
25,009 + -0.2
25,009 + +0.7
25,009 + +0.4
25,009 + -0.0
25,010 - +0.7
25,010 - -0.2
25,041 + GFF6841 0.10 -0.4
25,041 + GFF6841 0.10 -0.3
25,042 - GFF6841 0.10 -0.8

Or see this region's nucleotide sequence