Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6563 and GFF6564 overlap by 4 nucleotides GFF6564 and GFF6565 are separated by 300 nucleotides
GFF6563 - no description, at 85 to 945
GFF6563
GFF6564 - hypothetical protein, at 942 to 3,197
GFF6564
GFF6565 - hypothetical protein, at 3,498 to 4,742
GFF6565
Position (kb) 0
1
2
3
4 Strain fitness (log2 ratio) -2
-1
0
1 at 0.100 kb on + strand at 0.100 kb on + strand at 0.100 kb on + strand at 0.101 kb on - strand at 0.101 kb on - strand at 0.101 kb on - strand at 0.123 kb on - strand at 0.150 kb on - strand at 0.248 kb on + strand, within GFF6563 at 0.248 kb on + strand, within GFF6563 at 0.248 kb on + strand, within GFF6563 at 0.248 kb on + strand, within GFF6563 at 0.249 kb on - strand, within GFF6563 at 0.249 kb on - strand, within GFF6563 at 0.398 kb on + strand, within GFF6563 at 0.398 kb on + strand, within GFF6563 at 0.398 kb on + strand, within GFF6563 at 0.399 kb on - strand, within GFF6563 at 0.399 kb on - strand, within GFF6563 at 0.541 kb on + strand, within GFF6563 at 0.655 kb on + strand, within GFF6563 at 0.656 kb on - strand, within GFF6563 at 0.656 kb on - strand, within GFF6563 at 0.656 kb on - strand, within GFF6563 at 0.656 kb on - strand, within GFF6563 at 0.656 kb on - strand, within GFF6563 at 0.871 kb on + strand at 0.872 kb on - strand at 0.878 kb on + strand at 0.878 kb on + strand at 0.878 kb on + strand at 0.879 kb on - strand at 0.879 kb on - strand at 0.879 kb on - strand at 0.879 kb on - strand at 0.879 kb on - strand at 0.879 kb on - strand at 0.883 kb on - strand at 1.054 kb on + strand at 1.054 kb on + strand at 1.055 kb on - strand at 1.055 kb on - strand at 1.084 kb on - strand at 1.120 kb on + strand at 1.120 kb on + strand at 1.120 kb on + strand at 1.121 kb on - strand at 1.121 kb on - strand at 1.121 kb on - strand at 1.121 kb on - strand at 1.121 kb on - strand at 1.123 kb on + strand at 1.123 kb on + strand at 1.124 kb on - strand at 1.124 kb on - strand at 1.124 kb on - strand at 1.124 kb on - strand at 1.130 kb on + strand at 1.130 kb on + strand at 1.131 kb on - strand at 1.150 kb on + strand at 1.150 kb on + strand at 1.150 kb on + strand at 1.151 kb on - strand at 1.325 kb on + strand, within GFF6564 at 1.326 kb on - strand, within GFF6564 at 1.340 kb on + strand, within GFF6564 at 1.341 kb on - strand, within GFF6564 at 1.341 kb on - strand, within GFF6564 at 1.341 kb on - strand, within GFF6564 at 1.341 kb on - strand, within GFF6564 at 1.371 kb on + strand, within GFF6564 at 1.402 kb on - strand, within GFF6564 at 1.419 kb on + strand, within GFF6564 at 1.419 kb on + strand, within GFF6564 at 1.420 kb on - strand, within GFF6564 at 1.586 kb on + strand, within GFF6564 at 1.587 kb on - strand, within GFF6564 at 1.823 kb on + strand, within GFF6564 at 1.823 kb on + strand, within GFF6564 at 1.823 kb on + strand, within GFF6564 at 1.824 kb on - strand, within GFF6564 at 1.824 kb on - strand, within GFF6564 at 1.847 kb on + strand, within GFF6564 at 1.848 kb on - strand, within GFF6564 at 1.881 kb on + strand, within GFF6564 at 1.882 kb on - strand, within GFF6564 at 1.934 kb on - strand, within GFF6564 at 2.149 kb on - strand, within GFF6564 at 2.149 kb on - strand, within GFF6564 at 2.149 kb on - strand, within GFF6564 at 2.223 kb on + strand, within GFF6564 at 2.223 kb on + strand, within GFF6564 at 2.223 kb on + strand, within GFF6564 at 2.224 kb on - strand, within GFF6564 at 2.224 kb on - strand, within GFF6564 at 2.243 kb on + strand, within GFF6564 at 2.261 kb on - strand, within GFF6564 at 2.267 kb on + strand, within GFF6564 at 2.289 kb on + strand, within GFF6564 at 2.290 kb on - strand, within GFF6564 at 2.290 kb on - strand, within GFF6564 at 2.290 kb on - strand, within GFF6564 at 2.381 kb on + strand, within GFF6564 at 2.381 kb on + strand, within GFF6564 at 2.382 kb on - strand, within GFF6564 at 2.382 kb on - strand, within GFF6564 at 2.451 kb on + strand, within GFF6564 at 2.452 kb on - strand, within GFF6564 at 2.452 kb on - strand, within GFF6564 at 2.452 kb on - strand, within GFF6564 at 2.580 kb on + strand, within GFF6564 at 2.581 kb on - strand, within GFF6564 at 2.581 kb on - strand, within GFF6564 at 2.745 kb on + strand, within GFF6564 at 2.745 kb on + strand, within GFF6564 at 2.745 kb on + strand, within GFF6564 at 2.745 kb on + strand, within GFF6564 at 2.745 kb on + strand, within GFF6564 at 2.745 kb on + strand, within GFF6564 at 2.745 kb on + strand, within GFF6564 at 2.745 kb on + strand, within GFF6564 at 2.745 kb on + strand, within GFF6564 at 2.746 kb on - strand, within GFF6564 at 2.746 kb on - strand, within GFF6564 at 2.746 kb on - strand, within GFF6564 at 2.746 kb on - strand, within GFF6564 at 2.746 kb on - strand, within GFF6564 at 2.746 kb on - strand, within GFF6564 at 2.746 kb on - strand, within GFF6564 at 2.748 kb on - strand, within GFF6564 at 2.748 kb on - strand, within GFF6564 at 2.748 kb on - strand, within GFF6564 at 2.845 kb on - strand, within GFF6564 at 2.848 kb on + strand, within GFF6564 at 2.849 kb on - strand, within GFF6564 at 2.849 kb on - strand, within GFF6564 at 2.849 kb on - strand, within GFF6564 at 2.849 kb on - strand, within GFF6564 at 2.849 kb on - strand, within GFF6564 at 2.982 kb on + strand at 2.982 kb on + strand at 2.983 kb on - strand at 2.983 kb on - strand at 3.025 kb on - strand at 3.063 kb on + strand at 3.063 kb on + strand at 3.064 kb on - strand at 3.064 kb on - strand at 3.067 kb on + strand at 3.068 kb on - strand at 3.102 kb on + strand at 3.102 kb on + strand at 3.103 kb on - strand at 3.103 kb on - strand at 3.103 kb on - strand at 3.103 kb on - strand at 3.103 kb on - strand at 3.103 kb on - strand at 3.349 kb on + strand at 3.350 kb on - strand at 3.350 kb on - strand at 3.350 kb on - strand at 3.350 kb on - strand at 3.350 kb on - strand at 3.350 kb on - strand at 3.377 kb on - strand at 3.426 kb on + strand at 3.529 kb on + strand at 3.529 kb on + strand at 3.530 kb on - strand at 3.530 kb on - strand at 3.530 kb on - strand at 3.530 kb on - strand at 3.651 kb on + strand, within GFF6565 at 3.651 kb on + strand, within GFF6565 at 3.651 kb on + strand, within GFF6565 at 3.651 kb on + strand, within GFF6565 at 3.651 kb on + strand, within GFF6565 at 3.651 kb on + strand, within GFF6565 at 3.651 kb on + strand, within GFF6565 at 3.652 kb on - strand, within GFF6565 at 3.652 kb on - strand, within GFF6565 at 3.705 kb on + strand, within GFF6565 at 3.714 kb on + strand, within GFF6565 at 3.714 kb on + strand, within GFF6565 at 3.846 kb on - strand, within GFF6565 at 4.150 kb on - strand, within GFF6565 at 4.150 kb on - strand, within GFF6565 at 4.166 kb on - strand, within GFF6565
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 100 + -0.1 100 + +1.3 100 + -0.8 101 - +0.1 101 - +0.0 101 - -0.2 123 - -0.3 150 - -0.8 248 + GFF6563 0.19 -0.2 248 + GFF6563 0.19 -0.8 248 + GFF6563 0.19 -0.4 248 + GFF6563 0.19 +1.2 249 - GFF6563 0.19 +0.1 249 - GFF6563 0.19 +0.2 398 + GFF6563 0.36 +0.3 398 + GFF6563 0.36 -0.7 398 + GFF6563 0.36 -0.0 399 - GFF6563 0.36 +0.4 399 - GFF6563 0.36 -0.7 541 + GFF6563 0.53 -0.6 655 + GFF6563 0.66 -1.1 656 - GFF6563 0.66 -0.4 656 - GFF6563 0.66 +0.5 656 - GFF6563 0.66 -0.5 656 - GFF6563 0.66 +1.2 656 - GFF6563 0.66 -0.5 871 + +0.4 872 - -0.6 878 + -0.1 878 + +0.8 878 + +0.6 879 - -1.7 879 - +1.5 879 - +0.1 879 - -0.3 879 - +0.2 879 - -0.8 883 - +0.4 1,054 + +0.3 1,054 + -0.9 1,055 - +0.8 1,055 - -0.3 1,084 - -0.8 1,120 + -1.3 1,120 + -1.2 1,120 + -0.4 1,121 - +0.3 1,121 - -0.1 1,121 - +0.5 1,121 - -0.1 1,121 - +0.1 1,123 + -0.2 1,123 + -0.2 1,124 - -0.6 1,124 - +0.9 1,124 - +0.0 1,124 - -0.2 1,130 + -0.8 1,130 + -0.4 1,131 - +0.0 1,150 + -0.4 1,150 + +0.4 1,150 + -0.1 1,151 - -0.1 1,325 + GFF6564 0.17 +0.4 1,326 - GFF6564 0.17 -0.4 1,340 + GFF6564 0.18 -0.2 1,341 - GFF6564 0.18 -0.0 1,341 - GFF6564 0.18 +0.9 1,341 - GFF6564 0.18 -1.3 1,341 - GFF6564 0.18 -0.6 1,371 + GFF6564 0.19 -0.1 1,402 - GFF6564 0.20 -0.4 1,419 + GFF6564 0.21 +0.0 1,419 + GFF6564 0.21 -0.4 1,420 - GFF6564 0.21 -0.2 1,586 + GFF6564 0.29 +0.2 1,587 - GFF6564 0.29 -0.3 1,823 + GFF6564 0.39 -0.9 1,823 + GFF6564 0.39 +0.0 1,823 + GFF6564 0.39 -0.2 1,824 - GFF6564 0.39 -0.6 1,824 - GFF6564 0.39 -0.0 1,847 + GFF6564 0.40 -2.1 1,848 - GFF6564 0.40 +1.1 1,881 + GFF6564 0.42 -1.3 1,882 - GFF6564 0.42 -0.6 1,934 - GFF6564 0.44 -0.4 2,149 - GFF6564 0.54 -0.7 2,149 - GFF6564 0.54 +1.6 2,149 - GFF6564 0.54 -0.2 2,223 + GFF6564 0.57 -0.9 2,223 + GFF6564 0.57 +0.1 2,223 + GFF6564 0.57 +1.3 2,224 - GFF6564 0.57 -0.3 2,224 - GFF6564 0.57 -0.7 2,243 + GFF6564 0.58 -0.1 2,261 - GFF6564 0.58 +0.0 2,267 + GFF6564 0.59 -0.6 2,289 + GFF6564 0.60 -0.8 2,290 - GFF6564 0.60 -0.6 2,290 - GFF6564 0.60 -0.8 2,290 - GFF6564 0.60 -0.6 2,381 + GFF6564 0.64 -1.3 2,381 + GFF6564 0.64 +0.4 2,382 - GFF6564 0.64 -1.1 2,382 - GFF6564 0.64 -0.6 2,451 + GFF6564 0.67 +0.7 2,452 - GFF6564 0.67 +0.2 2,452 - GFF6564 0.67 +0.8 2,452 - GFF6564 0.67 -1.5 2,580 + GFF6564 0.73 +0.6 2,581 - GFF6564 0.73 -0.9 2,581 - GFF6564 0.73 -0.0 2,745 + GFF6564 0.80 -0.1 2,745 + GFF6564 0.80 +0.4 2,745 + GFF6564 0.80 -0.1 2,745 + GFF6564 0.80 -1.2 2,745 + GFF6564 0.80 -0.5 2,745 + GFF6564 0.80 -0.7 2,745 + GFF6564 0.80 +0.0 2,745 + GFF6564 0.80 -1.3 2,745 + GFF6564 0.80 -0.2 2,746 - GFF6564 0.80 -0.7 2,746 - GFF6564 0.80 -0.5 2,746 - GFF6564 0.80 +0.6 2,746 - GFF6564 0.80 +0.7 2,746 - GFF6564 0.80 -0.0 2,746 - GFF6564 0.80 -0.9 2,746 - GFF6564 0.80 -0.5 2,748 - GFF6564 0.80 -0.5 2,748 - GFF6564 0.80 +0.0 2,748 - GFF6564 0.80 -0.2 2,845 - GFF6564 0.84 -0.0 2,848 + GFF6564 0.84 -0.2 2,849 - GFF6564 0.85 -1.3 2,849 - GFF6564 0.85 -0.6 2,849 - GFF6564 0.85 +1.6 2,849 - GFF6564 0.85 -0.0 2,849 - GFF6564 0.85 -0.4 2,982 + -0.1 2,982 + +0.7 2,983 - +0.3 2,983 - -0.1 3,025 - -0.0 3,063 + +0.5 3,063 + +0.3 3,064 - +0.6 3,064 - +0.4 3,067 + -0.3 3,068 - -0.9 3,102 + +0.3 3,102 + -0.2 3,103 - +0.4 3,103 - -0.4 3,103 - +0.6 3,103 - -1.7 3,103 - -0.2 3,103 - -0.1 3,349 + -0.5 3,350 - -0.3 3,350 - -1.4 3,350 - -0.7 3,350 - -1.2 3,350 - +1.3 3,350 - -0.8 3,377 - -0.2 3,426 + +0.1 3,529 + -0.7 3,529 + -0.3 3,530 - -0.4 3,530 - -0.4 3,530 - -0.3 3,530 - -0.3 3,651 + GFF6565 0.12 -0.6 3,651 + GFF6565 0.12 +0.5 3,651 + GFF6565 0.12 +0.3 3,651 + GFF6565 0.12 +0.0 3,651 + GFF6565 0.12 -0.4 3,651 + GFF6565 0.12 -0.3 3,651 + GFF6565 0.12 -0.5 3,652 - GFF6565 0.12 -1.1 3,652 - GFF6565 0.12 +0.0 3,705 + GFF6565 0.17 +0.2 3,714 + GFF6565 0.17 +0.0 3,714 + GFF6565 0.17 +0.4 3,846 - GFF6565 0.28 +0.0 4,150 - GFF6565 0.52 +1.1 4,150 - GFF6565 0.52 -1.2 4,166 - GFF6565 0.54 -0.6
Or see this region's nucleotide sequence