Strain Fitness in Variovorax sp. SCN45 around GFF6328

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6327 and GFF6328 are separated by 7 nucleotidesGFF6328 and GFF6329 are separated by 15 nucleotides GFF6327 - DNA polymerase III delta subunit (EC 2.7.7.7), at 120,199 to 121,272 GFF6327 GFF6328 - LPS-assembly lipoprotein LptE, at 121,280 to 121,816 GFF6328 GFF6329 - Leucyl-tRNA synthetase (EC 6.1.1.4), at 121,832 to 124,462 GFF6329 Position (kb) 121 122Strain fitness (log2 ratio) -3 -2 -1 0 1at 121.281 kb on + strandat 121.282 kb on - strandat 121.282 kb on - strandat 121.282 kb on - strandat 121.282 kb on - strandat 121.282 kb on - strandat 121.282 kb on - strandat 121.457 kb on - strand, within GFF6328

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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121,281 + -2.5
121,282 - +0.1
121,282 - -0.4
121,282 - +1.6
121,282 - -0.4
121,282 - -0.6
121,282 - -0.7
121,457 - GFF6328 0.33 -3.6

Or see this region's nucleotide sequence