Strain Fitness in Variovorax sp. SCN45 around GFF6324

Experiment: no phage control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no phage control
114,430	+		GFF6323	0.30	-0.5
114,430	+		GFF6323	0.30	-1.5
114,430	+		GFF6323	0.30	-0.0
114,430	+		GFF6323	0.30	-0.3
114,430	+		GFF6323	0.30	-1.3
114,430	+		GFF6323	0.30	+0.1
114,430	+		GFF6323	0.30	-0.3
114,430	+		GFF6323	0.30	-0.9
114,430	+		GFF6323	0.30	-0.0
114,431	-		GFF6323	0.30	-0.9
114,431	-		GFF6323	0.30	-1.9
114,431	-		GFF6323	0.30	+0.3
114,431	-		GFF6323	0.30	-1.3
114,431	-		GFF6323	0.30	+0.5
114,431	-		GFF6323	0.30	+0.2
114,431	-		GFF6323	0.30	-1.0
114,431	-		GFF6323	0.30	+0.2
114,460	+		GFF6323	0.32	+3.0
114,610	+		GFF6323	0.44	+0.2
114,663	+		GFF6323	0.48	-0.5
114,664	-		GFF6323	0.48	+0.4
114,664	-		GFF6323	0.48	+2.0
114,787	+		GFF6323	0.58	-0.3
114,787	+		GFF6323	0.58	-2.2
114,788	-		GFF6323	0.58	-0.3
114,788	-		GFF6323	0.58	-1.0
114,788	-		GFF6323	0.58	-0.1
114,788	-		GFF6323	0.58	+0.3
114,788	-		GFF6323	0.58	-0.6
114,823	+		GFF6323	0.60	-0.6
114,823	+		GFF6323	0.60	-0.7
114,823	+		GFF6323	0.60	-0.3
114,823	+		GFF6323	0.60	-1.1
114,824	-		GFF6323	0.60	+0.6
114,853	+		GFF6323	0.63	+1.4
114,853	+		GFF6323	0.63	-0.1
114,853	+		GFF6323	0.63	+0.3
114,853	+		GFF6323	0.63	-0.2
114,853	+		GFF6323	0.63	-0.2
114,853	+		GFF6323	0.63	-0.5
114,853	+		GFF6323	0.63	+0.2
114,853	+		GFF6323	0.63	+0.7
114,853	+		GFF6323	0.63	-0.4
114,853	+		GFF6323	0.63	+0.4
114,853	+		GFF6323	0.63	-1.5
114,853	+		GFF6323	0.63	+1.0
114,854	-		GFF6323	0.63	-0.6
114,854	-		GFF6323	0.63	-0.9
114,854	-		GFF6323	0.63	-2.2
114,854	-		GFF6323	0.63	-0.0
114,854	-		GFF6323	0.63	-0.2
114,854	-		GFF6323	0.63	+0.3
114,854	-		GFF6323	0.63	-2.5
114,854	-		GFF6323	0.63	-0.1
114,854	-		GFF6323	0.63	+1.2
115,064	-		GFF6323	0.79	-0.8
115,513	+				-1.5
115,513	+				-0.9
115,513	+				-2.9
115,513	+				-2.0
115,513	+				-1.3
115,513	+				-1.0
115,513	+				-0.2
115,513	+				+0.2
115,513	+				-1.5
115,513	+				-1.0
115,513	+				-2.3
115,513	+				-2.2
115,513	+				-0.8
115,513	+				-1.6
115,513	+				+0.6
115,513	+				-1.8
115,513	+				-1.3
115,513	+				-0.9
115,513	+				-1.5
115,513	+				-1.2
115,514	-				-0.2
115,514	-				-1.8
115,514	-				-2.3
115,514	-				-1.1
115,514	-				+0.2
115,514	-				+0.5
115,514	-				-0.2
115,514	-				-1.7
115,514	-				-0.7
115,514	-				-1.5
115,600	+		GFF6324	0.13	-0.7
115,600	+		GFF6324	0.13	-0.5
115,600	+		GFF6324	0.13	-0.8
115,600	+		GFF6324	0.13	-1.3
115,601	-		GFF6324	0.13	-1.4
115,853	+		GFF6324	0.26	-1.6
116,056	+		GFF6324	0.36	+1.2
116,056	+		GFF6324	0.36	-1.5
116,119	+		GFF6324	0.39	-2.9
116,119	+		GFF6324	0.39	-2.7
116,120	-		GFF6324	0.39	-1.1
116,120	-		GFF6324	0.39	+0.0
116,206	+		GFF6324	0.44	+0.1
116,206	+		GFF6324	0.44	-1.2
116,206	+		GFF6324	0.44	-0.8
116,206	+		GFF6324	0.44	-0.2
116,206	+		GFF6324	0.44	-0.6
116,206	+		GFF6324	0.44	-1.3
116,206	+		GFF6324	0.44	-0.6
116,206	+		GFF6324	0.44	-1.2
116,206	+		GFF6324	0.44	-2.7
116,206	+		GFF6324	0.44	-0.8
116,207	-		GFF6324	0.44	-0.6
116,207	-		GFF6324	0.44	-1.6
116,207	-		GFF6324	0.44	-1.3
116,207	-		GFF6324	0.44	-1.3
116,207	-		GFF6324	0.44	-1.3
116,207	-		GFF6324	0.44	-1.0
116,260	+		GFF6324	0.47	-0.9
116,260	+		GFF6324	0.47	-1.1
116,261	-		GFF6324	0.47	-1.2
116,261	-		GFF6324	0.47	-1.4
116,443	+		GFF6324	0.56	-1.3
116,443	+		GFF6324	0.56	-0.5
116,443	+		GFF6324	0.56	-0.1
116,443	+		GFF6324	0.56	-0.4
116,443	+		GFF6324	0.56	-1.3
116,443	+		GFF6324	0.56	-1.1
116,443	+		GFF6324	0.56	-1.2
116,443	+		GFF6324	0.56	-1.2
116,443	+		GFF6324	0.56	-0.2
116,444	-		GFF6324	0.56	-1.1
116,444	-		GFF6324	0.56	-1.2
116,444	-		GFF6324	0.56	+0.0
116,524	+		GFF6324	0.60	-0.7
116,524	+		GFF6324	0.60	-1.5
116,524	+		GFF6324	0.60	-1.8
116,525	-		GFF6324	0.60	-0.9
116,525	-		GFF6324	0.60	+0.0
116,525	-		GFF6324	0.60	+0.5
116,614	+		GFF6324	0.65	-0.7
116,614	+		GFF6324	0.65	-1.2
116,614	+		GFF6324	0.65	-1.8
116,614	+		GFF6324	0.65	-1.3
116,614	+		GFF6324	0.65	-0.7
116,614	+		GFF6324	0.65	-0.2
116,614	+		GFF6324	0.65	-0.5
116,614	+		GFF6324	0.65	-0.5
116,614	+		GFF6324	0.65	-1.3
116,615	-		GFF6324	0.65	-0.4
116,615	-		GFF6324	0.65	-1.0
116,615	-		GFF6324	0.65	-2.4
116,615	-		GFF6324	0.65	-0.5
116,794	+		GFF6324	0.74	-1.2
116,794	+		GFF6324	0.74	-0.8
116,794	+		GFF6324	0.74	-0.6
116,794	+		GFF6324	0.74	-1.6
116,794	+		GFF6324	0.74	-0.8
116,794	+		GFF6324	0.74	+0.8
116,794	+		GFF6324	0.74	-1.8
116,794	+		GFF6324	0.74	-0.5
116,794	+		GFF6324	0.74	-0.2
116,794	+		GFF6324	0.74	-0.6
116,794	+		GFF6324	0.74	-0.3
116,794	+		GFF6324	0.74	-0.8
116,794	+		GFF6324	0.74	-0.2
116,794	+		GFF6324	0.74	-0.3
116,795	-		GFF6324	0.74	+0.0
116,795	-		GFF6324	0.74	-0.7
116,795	-		GFF6324	0.74	-0.5
116,795	-		GFF6324	0.74	+0.8
116,795	-		GFF6324	0.74	-1.7
116,795	-		GFF6324	0.74	-2.9
116,795	-		GFF6324	0.74	-1.5
116,795	-		GFF6324	0.74	-2.2
116,795	-		GFF6324	0.74	-1.7
116,795	-		GFF6324	0.74	-1.5
116,795	-		GFF6324	0.74	+1.2
116,878	+		GFF6324	0.78	-0.3
116,878	+		GFF6324	0.78	-0.9
116,879	-		GFF6324	0.78	-1.2
116,879	-		GFF6324	0.78	-1.1
116,879	-		GFF6324	0.78	-0.8
117,022	+		GFF6324	0.86	-1.9
117,022	+		GFF6324	0.86	-0.6
117,022	+		GFF6324	0.86	-0.8
117,022	+		GFF6324	0.86	+0.4
117,022	+		GFF6324	0.86	-0.7
117,022	+		GFF6324	0.86	+0.4
117,022	+		GFF6324	0.86	+1.2
117,022	+		GFF6324	0.86	-1.3
117,022	+		GFF6324	0.86	-0.8
117,022	+		GFF6324	0.86	-2.1
117,022	+		GFF6324	0.86	-0.8
117,022	+		GFF6324	0.86	-0.9
117,022	+		GFF6324	0.86	-1.3
117,022	+		GFF6324	0.86	-1.8
117,022	+		GFF6324	0.86	-1.1
117,023	-		GFF6324	0.86	-2.1
117,023	-		GFF6324	0.86	-0.5
117,023	-		GFF6324	0.86	-1.0
117,023	-		GFF6324	0.86	-1.0
117,023	-		GFF6324	0.86	-0.7
117,023	-		GFF6324	0.86	-2.9
117,023	-		GFF6324	0.86	-0.2
117,023	-		GFF6324	0.86	-2.0
117,023	-		GFF6324	0.86	+0.2
117,023	-		GFF6324	0.86	-1.5
117,023	-		GFF6324	0.86	-0.9
117,023	-		GFF6324	0.86	-1.9
117,023	-		GFF6324	0.86	+1.2
117,076	+		GFF6324	0.89	-1.6
117,076	+		GFF6324	0.89	-1.8
117,077	-		GFF6324	0.89	-0.5
117,077	-		GFF6324	0.89	-1.4
117,121	+				-0.9
117,133	+				-0.2
117,133	+				-0.5
117,133	+				-1.1
117,133	+				+0.1
117,133	+				-1.6
117,133	+				-0.5
117,133	+				-0.7
117,134	-				+0.1
117,134	-				-2.4
117,134	-				-1.3
117,134	-				-0.4
117,161	-				-2.0
117,161	-				-1.9
117,341	+				-0.9
117,341	+				+0.2
117,391	+				+0.4
117,391	+				-1.3
117,391	+				-1.2
117,392	-				+0.2
117,427	+				+0.6
117,427	+				+0.2
117,427	+				-0.0
117,427	+				-0.3
117,427	+				-0.8
117,427	+				-1.3
117,427	+				+0.2
117,427	+				+0.8
117,428	-				+0.2
117,428	-				+0.1
117,428	-				+1.4
117,428	-				-0.9
117,428	-				+0.2
117,428	-				+1.7
117,428	-				+0.4
117,428	-				+0.3
117,466	+				-1.3
117,466	+				-0.9
117,466	+				+0.8
117,466	+				-0.2
117,466	+				-0.4
117,466	+				-0.2
117,466	+				+1.6
117,466	+				+0.2
117,466	+				-0.2
117,466	+				-0.3
117,466	+				+0.8
117,466	+				+0.7
117,466	+				-0.8
117,466	+				+0.4
117,466	+				-0.2
117,466	+				+1.2
117,466	+				-0.7
117,466	+				+0.1
117,466	+				+0.2
117,466	+				-0.7
117,466	+				-0.6
117,466	+				+0.3
117,466	+				+1.0
117,466	+				+0.1
117,466	+				-0.1
117,466	+				-1.3
117,466	+				+1.8
117,466	+				+0.5
117,466	+				-0.5
117,466	+				-0.5
117,466	+				-0.1
117,466	+				-0.2
117,467	-				-0.2
117,467	-				+0.2
117,467	-				-1.0
117,467	-				+0.0
117,467	-				+0.2
117,467	-				+0.8
117,467	-				-2.1
117,467	-				-0.3
117,467	-				+0.6
117,467	-				-0.7
117,467	-				+0.2
117,467	-				-1.1
117,467	-				+1.0
117,467	-				-0.5
117,467	-				-0.3
117,467	-				+0.2
117,467	-				-1.0
117,467	-				-1.8
117,467	-				+0.2
117,467	-				-1.2
117,467	-				-1.9
117,467	-				-0.1
117,472	+				+0.1
117,472	+				+0.4
117,472	+				+0.1
117,472	+				+0.2
117,472	+				-0.5
117,472	+				+0.0
117,472	+				-0.2
117,472	+				-1.0
117,472	+				-0.1
117,472	+				+1.1
117,472	+				+1.1
117,472	+				-1.3
117,472	+				+1.4
117,472	+				+1.2
117,472	+				-0.4
117,472	+				-1.3
117,472	+				+0.5
117,472	+				+0.1
117,472	+				-1.0
117,472	+				-0.7
117,472	+				-0.7
117,472	+				+0.9
117,472	+				+0.1
117,472	+				-1.0
117,473	-				+0.4
117,473	-				-0.1
117,473	-				-0.7
117,473	-				+0.7
117,473	-				+0.1
117,473	-				-0.6
117,473	-				-0.5
117,473	-				+0.7
117,473	-				-0.9
117,473	-				+1.2
117,473	-				-0.1
117,473	-				-0.7
117,473	-				-1.6
117,473	-				-0.4
117,473	-				-0.5
117,473	-				-0.9
117,473	-				+0.1
117,473	-				+0.2
117,473	-				-0.3
117,473	-				-0.8
117,473	-				-1.0
117,473	-				+0.4
117,473	-				-1.2
117,473	-				-0.7
117,473	-				-0.4
117,473	-				-0.1
117,473	-				+0.1
117,473	-				-0.0
117,473	-				-0.8
117,473	-				-0.2
117,473	-				+1.1
117,610	+		GFF6325	0.17	-0.3
117,611	-		GFF6325	0.17	-0.5
117,611	-		GFF6325	0.17	+0.4
117,611	-		GFF6325	0.17	-0.9
117,611	-		GFF6325	0.17	-0.5
117,611	-		GFF6325	0.17	+0.2
117,611	-		GFF6325	0.17	+1.0
117,611	-		GFF6325	0.17	+0.3
117,611	-		GFF6325	0.17	+0.6
117,628	+		GFF6325	0.18	+0.2
117,628	+		GFF6325	0.18	-0.9
117,628	+		GFF6325	0.18	-0.6
117,628	+		GFF6325	0.18	-2.0
117,628	+		GFF6325	0.18	-0.6
117,629	-		GFF6325	0.18	+1.1
117,629	-		GFF6325	0.18	+0.8
117,629	-		GFF6325	0.18	-0.5
117,629	-		GFF6325	0.18	-0.4
117,629	-		GFF6325	0.18	-0.1
117,643	+		GFF6325	0.19	+1.4
117,643	+		GFF6325	0.19	-0.2
117,643	+		GFF6325	0.19	-0.8
117,643	+		GFF6325	0.19	+0.7
117,643	+		GFF6325	0.19	+0.1
117,643	+		GFF6325	0.19	+0.1
117,643	+		GFF6325	0.19	+1.3
117,643	+		GFF6325	0.19	-0.0
117,643	+		GFF6325	0.19	+0.4
117,643	+		GFF6325	0.19	-0.2
117,643	+		GFF6325	0.19	+1.1
117,643	+		GFF6325	0.19	-0.4
117,643	+		GFF6325	0.19	+0.3
117,644	-		GFF6325	0.20	-0.2
117,644	-		GFF6325	0.20	-1.5
117,644	-		GFF6325	0.20	+0.2
117,644	-		GFF6325	0.20	-1.5
117,644	-		GFF6325	0.20	-0.3
117,644	-		GFF6325	0.20	-0.2
117,644	-		GFF6325	0.20	+0.2
117,644	-		GFF6325	0.20	-0.6
117,644	-		GFF6325	0.20	+0.2
117,644	-		GFF6325	0.20	+0.6
117,644	-		GFF6325	0.20	-0.3
117,644	-		GFF6325	0.20	-0.3
117,644	-		GFF6325	0.20	-0.1
117,644	-		GFF6325	0.20	+0.7
117,686	+		GFF6325	0.23	-0.1
117,686	+		GFF6325	0.23	-1.1
117,686	+		GFF6325	0.23	+1.4
117,686	+		GFF6325	0.23	-0.4
117,686	+		GFF6325	0.23	-0.5
117,687	-		GFF6325	0.23	-1.6
117,687	-		GFF6325	0.23	+0.2
117,687	-		GFF6325	0.23	-0.3
117,687	-		GFF6325	0.23	+0.0
117,687	-		GFF6325	0.23	-0.9
117,687	-		GFF6325	0.23	-0.7
117,687	-		GFF6325	0.23	-0.1
117,901	+		GFF6325	0.39	-0.3
117,901	+		GFF6325	0.39	+2.4
117,901	+		GFF6325	0.39	+0.0
117,901	+		GFF6325	0.39	+0.1
117,902	-		GFF6325	0.39	-0.5
117,902	-		GFF6325	0.39	-0.6
117,902	-		GFF6325	0.39	+0.2
117,902	-		GFF6325	0.39	+0.2
117,902	-		GFF6325	0.39	+0.4
117,902	-		GFF6325	0.39	-0.1
117,902	-		GFF6325	0.39	-1.6
117,910	+		GFF6325	0.40	-0.8
117,910	+		GFF6325	0.40	+0.8
117,910	+		GFF6325	0.40	-0.2
117,910	+		GFF6325	0.40	-1.3
117,910	+		GFF6325	0.40	+0.5
117,910	+		GFF6325	0.40	-0.3
117,911	-		GFF6325	0.40	-2.3
117,911	-		GFF6325	0.40	+0.2
117,911	-		GFF6325	0.40	+0.1
117,911	-		GFF6325	0.40	+0.3
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