Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6261 and GFF6262 are separated by 77 nucleotides GFF6262 and GFF6263 overlap by 8 nucleotides GFF6263 and GFF6264 overlap by 4 nucleotides GFF6264 and GFF6265 overlap by 19 nucleotides
GFF6261 - Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG (EC 2.7.8.37), at 54,074 to 54,577
GFF6261
GFF6262 - Transcriptional regulator PhnF, at 54,655 to 55,410
GFF6262
GFF6263 - Uncharacterized protein Atu0170, clustered with phosphonate utilization, at 55,403 to 56,137
GFF6263
GFF6264 - Ribose 1,5-bisphosphate phosphokinase PhnN (EC 2.7.4.23), at 56,134 to 56,727
GFF6264
GFF6265 - Thiamine-monophosphate kinase (EC 2.7.4.16), at 56,709 to 57,665
GFF6265
Position (kb) 55
56
57 Strain fitness (log2 ratio) -2
-1
0
1
2 at 54.586 kb on + strand at 54.587 kb on - strand at 54.587 kb on - strand at 54.587 kb on - strand at 54.603 kb on - strand at 54.632 kb on + strand at 54.632 kb on + strand at 54.632 kb on + strand at 54.632 kb on + strand at 54.632 kb on + strand at 54.633 kb on - strand at 54.633 kb on - strand at 54.633 kb on - strand at 54.633 kb on - strand at 54.633 kb on - strand at 54.633 kb on - strand at 54.633 kb on - strand at 54.636 kb on + strand at 54.636 kb on + strand at 54.637 kb on - strand at 54.637 kb on - strand at 54.763 kb on + strand, within GFF6262 at 54.763 kb on + strand, within GFF6262 at 54.764 kb on - strand, within GFF6262 at 54.898 kb on + strand, within GFF6262 at 54.898 kb on + strand, within GFF6262 at 54.898 kb on + strand, within GFF6262 at 54.898 kb on + strand, within GFF6262 at 54.898 kb on + strand, within GFF6262 at 54.899 kb on - strand, within GFF6262 at 55.216 kb on + strand, within GFF6262 at 55.216 kb on + strand, within GFF6262 at 55.216 kb on + strand, within GFF6262 at 55.216 kb on + strand, within GFF6262 at 55.352 kb on - strand at 55.917 kb on - strand, within GFF6263 at 56.152 kb on + strand at 56.152 kb on + strand at 56.153 kb on - strand at 56.153 kb on - strand at 56.153 kb on - strand at 56.368 kb on + strand, within GFF6264 at 56.369 kb on - strand, within GFF6264 at 56.440 kb on + strand, within GFF6264 at 56.440 kb on + strand, within GFF6264 at 56.441 kb on - strand, within GFF6264 at 56.592 kb on - strand, within GFF6264 at 56.697 kb on + strand at 56.697 kb on + strand at 56.698 kb on - strand at 56.698 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 54,586 + +0.3 54,587 - -2.0 54,587 - -0.1 54,587 - -0.6 54,603 - -1.7 54,632 + -1.4 54,632 + +0.1 54,632 + -0.6 54,632 + -0.4 54,632 + +0.1 54,633 - -0.6 54,633 - +1.2 54,633 - +0.4 54,633 - -0.5 54,633 - -0.5 54,633 - -0.0 54,633 - -0.0 54,636 + +0.1 54,636 + +0.2 54,637 - -0.4 54,637 - -0.3 54,763 + GFF6262 0.14 -0.2 54,763 + GFF6262 0.14 -1.0 54,764 - GFF6262 0.14 +0.1 54,898 + GFF6262 0.32 -0.6 54,898 + GFF6262 0.32 +0.8 54,898 + GFF6262 0.32 +0.6 54,898 + GFF6262 0.32 +0.5 54,898 + GFF6262 0.32 -0.8 54,899 - GFF6262 0.32 +0.0 55,216 + GFF6262 0.74 -2.3 55,216 + GFF6262 0.74 -0.6 55,216 + GFF6262 0.74 -0.3 55,216 + GFF6262 0.74 +0.6 55,352 - -0.5 55,917 - GFF6263 0.70 -0.9 56,152 + +1.8 56,152 + +0.8 56,153 - +0.2 56,153 - -1.2 56,153 - -0.3 56,368 + GFF6264 0.39 +0.3 56,369 - GFF6264 0.40 +0.0 56,440 + GFF6264 0.52 -0.5 56,440 + GFF6264 0.52 +0.6 56,441 - GFF6264 0.52 -1.3 56,592 - GFF6264 0.77 -0.4 56,697 + -0.6 56,697 + -0.2 56,698 - -0.2 56,698 - -0.7
Or see this region's nucleotide sequence