Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6160 and GFF6161 are separated by 19 nucleotides GFF6161 and GFF6162 overlap by 4 nucleotides GFF6162 and GFF6163 are separated by 11 nucleotides GFF6163 and GFF6164 are separated by 4 nucleotides
GFF6160 - Dehydrogenase molybdenum cofactor insertion protein, XdhC/CoxF family, at 65,911 to 66,933
GFF6160
GFF6161 - Hydroxymethylpyrimidine ABC transporter, ATPase component, at 66,953 to 67,756
GFF6161
GFF6162 - Dihydrodipicolinate synthase family protein RB7999, at 67,753 to 68,820
GFF6162
GFF6163 - hypothetical protein, at 68,832 to 69,686
GFF6163
GFF6164 - FIG01094124: hypothetical protein, at 69,691 to 70,740
GFF6164
Position (kb) 67
68
69 Strain fitness (log2 ratio) -1
0
1 at 66.796 kb on + strand, within GFF6160 at 66.796 kb on + strand, within GFF6160 at 66.796 kb on + strand, within GFF6160 at 66.796 kb on + strand, within GFF6160 at 66.797 kb on - strand, within GFF6160 at 66.797 kb on - strand, within GFF6160 at 66.797 kb on - strand, within GFF6160 at 66.975 kb on + strand at 66.975 kb on + strand at 66.975 kb on + strand at 66.975 kb on + strand at 66.975 kb on + strand at 66.976 kb on - strand at 66.976 kb on - strand at 66.976 kb on - strand at 66.976 kb on - strand at 66.990 kb on + strand at 66.990 kb on + strand at 66.991 kb on - strand at 67.311 kb on + strand, within GFF6161 at 67.312 kb on - strand, within GFF6161 at 67.312 kb on - strand, within GFF6161 at 67.677 kb on + strand at 67.678 kb on - strand at 67.820 kb on + strand at 67.820 kb on + strand at 67.821 kb on - strand at 67.822 kb on + strand at 67.822 kb on + strand at 67.823 kb on - strand at 67.823 kb on - strand at 68.122 kb on + strand, within GFF6162 at 68.122 kb on + strand, within GFF6162 at 68.122 kb on + strand, within GFF6162 at 68.122 kb on + strand, within GFF6162 at 68.123 kb on - strand, within GFF6162 at 68.370 kb on - strand, within GFF6162 at 68.475 kb on - strand, within GFF6162 at 68.606 kb on + strand, within GFF6162 at 68.607 kb on - strand, within GFF6162 at 68.684 kb on + strand, within GFF6162 at 68.685 kb on - strand, within GFF6162 at 69.343 kb on + strand, within GFF6163 at 69.343 kb on + strand, within GFF6163 at 69.343 kb on + strand, within GFF6163 at 69.344 kb on - strand, within GFF6163 at 69.344 kb on - strand, within GFF6163 at 69.344 kb on - strand, within GFF6163 at 69.695 kb on + strand at 69.695 kb on + strand at 69.695 kb on + strand at 69.696 kb on - strand at 69.696 kb on - strand at 69.734 kb on + strand at 69.735 kb on - strand at 69.735 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 66,796 + GFF6160 0.87 -0.9 66,796 + GFF6160 0.87 -0.3 66,796 + GFF6160 0.87 -0.4 66,796 + GFF6160 0.87 -0.3 66,797 - GFF6160 0.87 +0.0 66,797 - GFF6160 0.87 -0.7 66,797 - GFF6160 0.87 +0.6 66,975 + +0.0 66,975 + +1.1 66,975 + +0.4 66,975 + -0.5 66,975 + -0.9 66,976 - +0.3 66,976 - +0.2 66,976 - -1.0 66,976 - +0.1 66,990 + +1.4 66,990 + -0.4 66,991 - +0.2 67,311 + GFF6161 0.45 -0.2 67,312 - GFF6161 0.45 -0.7 67,312 - GFF6161 0.45 -0.9 67,677 + -0.7 67,678 - -0.7 67,820 + -0.2 67,820 + -0.9 67,821 - -1.3 67,822 + +0.1 67,822 + +0.5 67,823 - +0.4 67,823 - +0.5 68,122 + GFF6162 0.35 -0.4 68,122 + GFF6162 0.35 +0.1 68,122 + GFF6162 0.35 -0.2 68,122 + GFF6162 0.35 +1.0 68,123 - GFF6162 0.35 +0.1 68,370 - GFF6162 0.58 -0.7 68,475 - GFF6162 0.68 -0.0 68,606 + GFF6162 0.80 +1.7 68,607 - GFF6162 0.80 -0.8 68,684 + GFF6162 0.87 -0.7 68,685 - GFF6162 0.87 -0.6 69,343 + GFF6163 0.60 +0.1 69,343 + GFF6163 0.60 +0.7 69,343 + GFF6163 0.60 +1.1 69,344 - GFF6163 0.60 +0.1 69,344 - GFF6163 0.60 +0.1 69,344 - GFF6163 0.60 +0.1 69,695 + +0.9 69,695 + -0.2 69,695 + +0.1 69,696 - -0.0 69,696 - -0.1 69,734 + -0.5 69,735 - +1.1 69,735 - +0.7
Or see this region's nucleotide sequence