Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6158 and GFF6159 are separated by 34 nucleotides GFF6159 and GFF6160 are separated by 19 nucleotides GFF6160 and GFF6161 are separated by 19 nucleotides GFF6161 and GFF6162 overlap by 4 nucleotides
GFF6158 - carbon monoxide dehydrogenase E protein, at 64,013 to 65,227
GFF6158
GFF6159 - carbon monoxide dehydrogenase G protein, at 65,262 to 65,891
GFF6159
GFF6160 - Dehydrogenase molybdenum cofactor insertion protein, XdhC/CoxF family, at 65,911 to 66,933
GFF6160
GFF6161 - Hydroxymethylpyrimidine ABC transporter, ATPase component, at 66,953 to 67,756
GFF6161
GFF6162 - Dihydrodipicolinate synthase family protein RB7999, at 67,753 to 68,820
GFF6162
Position (kb) 65
66
67 Strain fitness (log2 ratio) -1
0
1 at 65.391 kb on + strand, within GFF6159 at 65.391 kb on + strand, within GFF6159 at 65.392 kb on - strand, within GFF6159 at 65.392 kb on - strand, within GFF6159 at 65.392 kb on - strand, within GFF6159 at 65.481 kb on + strand, within GFF6159 at 65.482 kb on - strand, within GFF6159 at 65.482 kb on - strand, within GFF6159 at 65.577 kb on - strand, within GFF6159 at 65.631 kb on + strand, within GFF6159 at 65.631 kb on + strand, within GFF6159 at 65.631 kb on + strand, within GFF6159 at 66.109 kb on + strand, within GFF6160 at 66.109 kb on + strand, within GFF6160 at 66.173 kb on - strand, within GFF6160 at 66.454 kb on + strand, within GFF6160 at 66.683 kb on - strand, within GFF6160 at 66.683 kb on - strand, within GFF6160 at 66.683 kb on - strand, within GFF6160 at 66.796 kb on + strand, within GFF6160 at 66.796 kb on + strand, within GFF6160 at 66.796 kb on + strand, within GFF6160 at 66.796 kb on + strand, within GFF6160 at 66.797 kb on - strand, within GFF6160 at 66.797 kb on - strand, within GFF6160 at 66.797 kb on - strand, within GFF6160 at 66.975 kb on + strand at 66.975 kb on + strand at 66.975 kb on + strand at 66.975 kb on + strand at 66.975 kb on + strand at 66.976 kb on - strand at 66.976 kb on - strand at 66.976 kb on - strand at 66.976 kb on - strand at 66.990 kb on + strand at 66.990 kb on + strand at 66.991 kb on - strand at 67.311 kb on + strand, within GFF6161 at 67.312 kb on - strand, within GFF6161 at 67.312 kb on - strand, within GFF6161 at 67.677 kb on + strand at 67.678 kb on - strand at 67.820 kb on + strand at 67.820 kb on + strand at 67.821 kb on - strand at 67.822 kb on + strand at 67.822 kb on + strand at 67.823 kb on - strand at 67.823 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 65,391 + GFF6159 0.20 -0.4 65,391 + GFF6159 0.20 -1.0 65,392 - GFF6159 0.21 -0.0 65,392 - GFF6159 0.21 -0.9 65,392 - GFF6159 0.21 -0.1 65,481 + GFF6159 0.35 +1.7 65,482 - GFF6159 0.35 -0.9 65,482 - GFF6159 0.35 +1.7 65,577 - GFF6159 0.50 -1.0 65,631 + GFF6159 0.59 +0.3 65,631 + GFF6159 0.59 +0.1 65,631 + GFF6159 0.59 -0.5 66,109 + GFF6160 0.19 -0.9 66,109 + GFF6160 0.19 -0.3 66,173 - GFF6160 0.26 -0.4 66,454 + GFF6160 0.53 +1.2 66,683 - GFF6160 0.75 +0.8 66,683 - GFF6160 0.75 -0.3 66,683 - GFF6160 0.75 +0.1 66,796 + GFF6160 0.87 -0.9 66,796 + GFF6160 0.87 -0.3 66,796 + GFF6160 0.87 -0.4 66,796 + GFF6160 0.87 -0.3 66,797 - GFF6160 0.87 +0.0 66,797 - GFF6160 0.87 -0.7 66,797 - GFF6160 0.87 +0.6 66,975 + +0.0 66,975 + +1.1 66,975 + +0.4 66,975 + -0.5 66,975 + -0.9 66,976 - +0.3 66,976 - +0.2 66,976 - -1.0 66,976 - +0.1 66,990 + +1.4 66,990 + -0.4 66,991 - +0.2 67,311 + GFF6161 0.45 -0.2 67,312 - GFF6161 0.45 -0.7 67,312 - GFF6161 0.45 -0.9 67,677 + -0.7 67,678 - -0.7 67,820 + -0.2 67,820 + -0.9 67,821 - -1.3 67,822 + +0.1 67,822 + +0.5 67,823 - +0.4 67,823 - +0.5
Or see this region's nucleotide sequence