Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6157 and GFF6158 are separated by 16 nucleotides GFF6158 and GFF6159 are separated by 34 nucleotides GFF6159 and GFF6160 are separated by 19 nucleotides
GFF6157 - Carbon monoxide oxidation accessory protein CoxD, at 63,094 to 63,996
GFF6157
GFF6158 - carbon monoxide dehydrogenase E protein, at 64,013 to 65,227
GFF6158
GFF6159 - carbon monoxide dehydrogenase G protein, at 65,262 to 65,891
GFF6159
GFF6160 - Dehydrogenase molybdenum cofactor insertion protein, XdhC/CoxF family, at 65,911 to 66,933
GFF6160
Position (kb) 64
65
66 Strain fitness (log2 ratio) -2
-1
0
1
2 at 63.145 kb on + strand at 63.145 kb on + strand at 63.298 kb on + strand, within GFF6157 at 63.298 kb on + strand, within GFF6157 at 63.298 kb on + strand, within GFF6157 at 63.299 kb on - strand, within GFF6157 at 63.329 kb on - strand, within GFF6157 at 63.329 kb on - strand, within GFF6157 at 63.340 kb on + strand, within GFF6157 at 63.341 kb on - strand, within GFF6157 at 63.341 kb on - strand, within GFF6157 at 63.341 kb on - strand, within GFF6157 at 63.413 kb on - strand, within GFF6157 at 63.424 kb on + strand, within GFF6157 at 63.425 kb on - strand, within GFF6157 at 63.425 kb on - strand, within GFF6157 at 63.425 kb on - strand, within GFF6157 at 63.539 kb on - strand, within GFF6157 at 63.539 kb on - strand, within GFF6157 at 63.539 kb on - strand, within GFF6157 at 63.550 kb on + strand, within GFF6157 at 63.551 kb on - strand, within GFF6157 at 63.551 kb on - strand, within GFF6157 at 63.664 kb on + strand, within GFF6157 at 63.664 kb on + strand, within GFF6157 at 63.664 kb on + strand, within GFF6157 at 63.665 kb on - strand, within GFF6157 at 63.680 kb on - strand, within GFF6157 at 64.650 kb on + strand, within GFF6158 at 64.651 kb on - strand, within GFF6158 at 64.651 kb on - strand, within GFF6158 at 64.733 kb on + strand, within GFF6158 at 64.734 kb on - strand, within GFF6158 at 65.391 kb on + strand, within GFF6159 at 65.391 kb on + strand, within GFF6159 at 65.392 kb on - strand, within GFF6159 at 65.392 kb on - strand, within GFF6159 at 65.392 kb on - strand, within GFF6159 at 65.481 kb on + strand, within GFF6159 at 65.482 kb on - strand, within GFF6159 at 65.482 kb on - strand, within GFF6159 at 65.577 kb on - strand, within GFF6159 at 65.631 kb on + strand, within GFF6159 at 65.631 kb on + strand, within GFF6159 at 65.631 kb on + strand, within GFF6159 at 66.109 kb on + strand, within GFF6160 at 66.109 kb on + strand, within GFF6160 at 66.173 kb on - strand, within GFF6160
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 63,145 + +0.7 63,145 + -0.4 63,298 + GFF6157 0.23 -0.5 63,298 + GFF6157 0.23 +1.5 63,298 + GFF6157 0.23 +0.2 63,299 - GFF6157 0.23 +0.7 63,329 - GFF6157 0.26 -1.3 63,329 - GFF6157 0.26 +0.8 63,340 + GFF6157 0.27 +0.4 63,341 - GFF6157 0.27 -0.7 63,341 - GFF6157 0.27 +0.1 63,341 - GFF6157 0.27 -0.5 63,413 - GFF6157 0.35 -0.2 63,424 + GFF6157 0.37 +1.4 63,425 - GFF6157 0.37 -1.0 63,425 - GFF6157 0.37 +0.3 63,425 - GFF6157 0.37 +0.0 63,539 - GFF6157 0.49 -1.2 63,539 - GFF6157 0.49 +0.3 63,539 - GFF6157 0.49 -0.8 63,550 + GFF6157 0.50 +1.9 63,551 - GFF6157 0.51 +0.2 63,551 - GFF6157 0.51 +0.1 63,664 + GFF6157 0.63 +0.0 63,664 + GFF6157 0.63 -0.1 63,664 + GFF6157 0.63 -1.9 63,665 - GFF6157 0.63 -0.3 63,680 - GFF6157 0.65 +1.7 64,650 + GFF6158 0.52 -0.1 64,651 - GFF6158 0.53 -0.5 64,651 - GFF6158 0.53 +0.3 64,733 + GFF6158 0.59 -1.8 64,734 - GFF6158 0.59 +0.4 65,391 + GFF6159 0.20 -0.4 65,391 + GFF6159 0.20 -1.0 65,392 - GFF6159 0.21 -0.0 65,392 - GFF6159 0.21 -0.9 65,392 - GFF6159 0.21 -0.1 65,481 + GFF6159 0.35 +1.7 65,482 - GFF6159 0.35 -0.9 65,482 - GFF6159 0.35 +1.7 65,577 - GFF6159 0.50 -1.0 65,631 + GFF6159 0.59 +0.3 65,631 + GFF6159 0.59 +0.1 65,631 + GFF6159 0.59 -0.5 66,109 + GFF6160 0.19 -0.9 66,109 + GFF6160 0.19 -0.3 66,173 - GFF6160 0.26 -0.4
Or see this region's nucleotide sequence