Strain Fitness in Variovorax sp. SCN45 around GFF596

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF594 and GFF595 are separated by 18 nucleotidesGFF595 and GFF596 are separated by 72 nucleotidesGFF596 and GFF597 are separated by 3 nucleotides GFF594 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 640,533 to 641,654 GFF594 GFF595 - Transcriptional regulator, LysR family, at 641,673 to 642,551 GFF595 GFF596 - no description, at 642,624 to 643,160 GFF596 GFF597 - Uncharacterized MFS-type transporter, at 643,164 to 644,714 GFF597 Position (kb) 642 643 644Strain fitness (log2 ratio) -2 -1 0 1 2at 641.719 kb on + strandat 641.719 kb on + strandat 641.719 kb on + strandat 641.720 kb on - strandat 641.720 kb on - strandat 641.720 kb on - strandat 641.720 kb on - strandat 641.720 kb on - strandat 641.720 kb on - strandat 641.833 kb on + strand, within GFF595at 641.833 kb on + strand, within GFF595at 641.833 kb on + strand, within GFF595at 641.833 kb on + strand, within GFF595at 641.834 kb on - strand, within GFF595at 641.899 kb on + strand, within GFF595at 641.899 kb on + strand, within GFF595at 641.899 kb on + strand, within GFF595at 641.899 kb on + strand, within GFF595at 641.899 kb on + strand, within GFF595at 641.900 kb on - strand, within GFF595at 641.900 kb on - strand, within GFF595at 641.900 kb on - strand, within GFF595at 641.900 kb on - strand, within GFF595at 641.932 kb on + strand, within GFF595at 641.932 kb on + strand, within GFF595at 641.932 kb on + strand, within GFF595at 641.933 kb on - strand, within GFF595at 641.933 kb on - strand, within GFF595at 642.142 kb on + strand, within GFF595at 642.142 kb on + strand, within GFF595at 642.142 kb on + strand, within GFF595at 642.142 kb on + strand, within GFF595at 642.142 kb on + strand, within GFF595at 642.142 kb on + strand, within GFF595at 642.143 kb on - strand, within GFF595at 642.143 kb on - strand, within GFF595at 642.238 kb on + strand, within GFF595at 642.238 kb on + strand, within GFF595at 642.238 kb on + strand, within GFF595at 642.238 kb on + strand, within GFF595at 642.238 kb on + strand, within GFF595at 642.238 kb on + strand, within GFF595at 642.238 kb on + strand, within GFF595at 642.238 kb on + strand, within GFF595at 642.238 kb on + strand, within GFF595at 642.238 kb on + strand, within GFF595at 642.239 kb on - strand, within GFF595at 642.239 kb on - strand, within GFF595at 642.239 kb on - strand, within GFF595at 642.239 kb on - strand, within GFF595at 642.239 kb on - strand, within GFF595at 642.239 kb on - strand, within GFF595at 642.239 kb on - strand, within GFF595at 642.239 kb on - strand, within GFF595at 642.375 kb on + strand, within GFF595at 642.375 kb on + strand, within GFF595at 642.375 kb on + strand, within GFF595at 642.376 kb on - strand, within GFF595at 642.376 kb on - strand, within GFF595at 642.563 kb on + strandat 642.591 kb on + strandat 642.604 kb on + strandat 642.732 kb on + strand, within GFF596at 642.732 kb on + strand, within GFF596at 642.732 kb on + strand, within GFF596at 642.732 kb on + strand, within GFF596at 642.732 kb on + strand, within GFF596at 642.732 kb on + strand, within GFF596at 642.733 kb on - strand, within GFF596at 642.733 kb on - strand, within GFF596at 642.733 kb on - strand, within GFF596at 642.733 kb on - strand, within GFF596at 642.733 kb on - strand, within GFF596at 642.733 kb on - strand, within GFF596at 642.733 kb on - strand, within GFF596at 642.733 kb on - strand, within GFF596at 642.805 kb on + strand, within GFF596at 642.805 kb on + strand, within GFF596at 642.806 kb on - strand, within GFF596at 643.248 kb on + strandat 643.248 kb on + strandat 643.248 kb on + strandat 643.248 kb on + strandat 643.249 kb on - strandat 643.249 kb on - strandat 643.321 kb on - strand, within GFF597at 643.380 kb on + strand, within GFF597at 643.381 kb on - strand, within GFF597at 643.381 kb on - strand, within GFF597at 643.440 kb on + strand, within GFF597at 643.440 kb on + strand, within GFF597at 643.441 kb on - strand, within GFF597at 643.641 kb on + strand, within GFF597at 643.641 kb on + strand, within GFF597at 643.641 kb on + strand, within GFF597at 643.641 kb on + strand, within GFF597at 643.642 kb on - strand, within GFF597at 643.642 kb on - strand, within GFF597at 643.642 kb on - strand, within GFF597at 643.825 kb on - strand, within GFF597at 643.825 kb on - strand, within GFF597at 643.825 kb on - strand, within GFF597at 643.853 kb on - strand, within GFF597at 643.853 kb on - strand, within GFF597at 643.951 kb on - strand, within GFF597at 643.951 kb on - strand, within GFF597

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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641,719 + +0.3
641,719 + -0.2
641,719 + -0.0
641,720 - -0.3
641,720 - +0.3
641,720 - -0.9
641,720 - -0.1
641,720 - -2.1
641,720 - +0.6
641,833 + GFF595 0.18 +0.0
641,833 + GFF595 0.18 -0.0
641,833 + GFF595 0.18 -1.3
641,833 + GFF595 0.18 +0.4
641,834 - GFF595 0.18 +0.8
641,899 + GFF595 0.26 +0.7
641,899 + GFF595 0.26 -0.6
641,899 + GFF595 0.26 +0.1
641,899 + GFF595 0.26 +0.0
641,899 + GFF595 0.26 +2.4
641,900 - GFF595 0.26 +1.4
641,900 - GFF595 0.26 -0.9
641,900 - GFF595 0.26 +0.1
641,900 - GFF595 0.26 -1.9
641,932 + GFF595 0.29 -0.7
641,932 + GFF595 0.29 -1.8
641,932 + GFF595 0.29 +0.3
641,933 - GFF595 0.30 +1.7
641,933 - GFF595 0.30 -1.1
642,142 + GFF595 0.53 +0.1
642,142 + GFF595 0.53 -0.5
642,142 + GFF595 0.53 +0.5
642,142 + GFF595 0.53 -0.4
642,142 + GFF595 0.53 +2.0
642,142 + GFF595 0.53 -0.1
642,143 - GFF595 0.53 -0.3
642,143 - GFF595 0.53 -0.5
642,238 + GFF595 0.64 -1.3
642,238 + GFF595 0.64 -0.2
642,238 + GFF595 0.64 -0.6
642,238 + GFF595 0.64 -0.1
642,238 + GFF595 0.64 -0.6
642,238 + GFF595 0.64 -0.4
642,238 + GFF595 0.64 -0.7
642,238 + GFF595 0.64 -1.1
642,238 + GFF595 0.64 -0.4
642,238 + GFF595 0.64 -0.1
642,239 - GFF595 0.64 -0.5
642,239 - GFF595 0.64 -1.7
642,239 - GFF595 0.64 +0.3
642,239 - GFF595 0.64 -0.6
642,239 - GFF595 0.64 -1.8
642,239 - GFF595 0.64 +0.1
642,239 - GFF595 0.64 +0.4
642,239 - GFF595 0.64 -0.6
642,375 + GFF595 0.80 +0.9
642,375 + GFF595 0.80 -1.1
642,375 + GFF595 0.80 -0.9
642,376 - GFF595 0.80 +0.3
642,376 - GFF595 0.80 -0.2
642,563 + -0.4
642,591 + +0.2
642,604 + -0.2
642,732 + GFF596 0.20 -0.2
642,732 + GFF596 0.20 -0.6
642,732 + GFF596 0.20 +0.3
642,732 + GFF596 0.20 +1.0
642,732 + GFF596 0.20 -1.8
642,732 + GFF596 0.20 -0.8
642,733 - GFF596 0.20 -0.4
642,733 - GFF596 0.20 -0.3
642,733 - GFF596 0.20 -0.8
642,733 - GFF596 0.20 -0.4
642,733 - GFF596 0.20 +0.4
642,733 - GFF596 0.20 -0.9
642,733 - GFF596 0.20 -0.2
642,733 - GFF596 0.20 -1.2
642,805 + GFF596 0.34 -0.8
642,805 + GFF596 0.34 -0.3
642,806 - GFF596 0.34 -0.9
643,248 + +0.6
643,248 + +0.1
643,248 + -0.4
643,248 + -0.2
643,249 - +0.4
643,249 - +0.3
643,321 - GFF597 0.10 -1.0
643,380 + GFF597 0.14 +0.3
643,381 - GFF597 0.14 -0.7
643,381 - GFF597 0.14 -2.6
643,440 + GFF597 0.18 +0.1
643,440 + GFF597 0.18 -0.4
643,441 - GFF597 0.18 +1.4
643,641 + GFF597 0.31 -0.2
643,641 + GFF597 0.31 +0.3
643,641 + GFF597 0.31 +0.2
643,641 + GFF597 0.31 +1.0
643,642 - GFF597 0.31 +0.2
643,642 - GFF597 0.31 -0.9
643,642 - GFF597 0.31 -0.8
643,825 - GFF597 0.43 +0.1
643,825 - GFF597 0.43 +0.8
643,825 - GFF597 0.43 -0.5
643,853 - GFF597 0.44 +0.2
643,853 - GFF597 0.44 -0.9
643,951 - GFF597 0.51 -1.1
643,951 - GFF597 0.51 +0.2

Or see this region's nucleotide sequence