Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF575 and GFF576 are separated by 15 nucleotides GFF576 and GFF577 are separated by 3 nucleotides GFF577 and GFF578 are separated by 89 nucleotides
GFF575 - Tol-Pal system protein TolQ, at 620,197 to 620,919
GFF575
GFF576 - Tol biopolymer transport system, TolR protein, at 620,935 to 621,372
GFF576
GFF577 - TolA protein, at 621,376 to 622,299
GFF577
GFF578 - Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129), at 622,389 to 624,119
GFF578
Position (kb) 621
622
623 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 620.468 kb on - strand, within GFF575 at 620.468 kb on - strand, within GFF575 at 620.614 kb on + strand, within GFF575 at 620.614 kb on + strand, within GFF575 at 620.614 kb on + strand, within GFF575 at 620.614 kb on + strand, within GFF575 at 620.614 kb on + strand, within GFF575 at 620.614 kb on + strand, within GFF575 at 620.614 kb on + strand, within GFF575 at 620.614 kb on + strand, within GFF575 at 620.614 kb on + strand, within GFF575 at 620.614 kb on + strand, within GFF575 at 620.614 kb on + strand, within GFF575 at 620.614 kb on + strand, within GFF575 at 620.615 kb on - strand, within GFF575 at 620.615 kb on - strand, within GFF575 at 620.615 kb on - strand, within GFF575 at 620.615 kb on - strand, within GFF575 at 620.615 kb on - strand, within GFF575 at 620.615 kb on - strand, within GFF575 at 620.615 kb on - strand, within GFF575 at 620.615 kb on - strand, within GFF575 at 620.615 kb on - strand, within GFF575 at 620.615 kb on - strand, within GFF575 at 620.615 kb on - strand, within GFF575 at 620.615 kb on - strand, within GFF575 at 620.615 kb on - strand, within GFF575 at 620.615 kb on - strand, within GFF575 at 620.615 kb on - strand, within GFF575 at 620.615 kb on - strand, within GFF575 at 620.615 kb on - strand, within GFF575 at 620.615 kb on - strand, within GFF575 at 620.615 kb on - strand, within GFF575 at 620.773 kb on + strand, within GFF575 at 620.773 kb on + strand, within GFF575 at 620.774 kb on - strand, within GFF575 at 620.774 kb on - strand, within GFF575 at 620.774 kb on - strand, within GFF575 at 620.824 kb on + strand, within GFF575 at 620.824 kb on + strand, within GFF575 at 620.824 kb on + strand, within GFF575 at 620.824 kb on + strand, within GFF575 at 620.824 kb on + strand, within GFF575 at 620.824 kb on + strand, within GFF575 at 620.824 kb on + strand, within GFF575 at 620.824 kb on + strand, within GFF575 at 620.825 kb on - strand, within GFF575 at 620.825 kb on - strand, within GFF575 at 620.825 kb on - strand, within GFF575 at 620.825 kb on - strand, within GFF575 at 620.825 kb on - strand, within GFF575 at 620.825 kb on - strand, within GFF575 at 620.825 kb on - strand, within GFF575 at 620.825 kb on - strand, within GFF575 at 621.283 kb on + strand, within GFF576 at 621.283 kb on + strand, within GFF576 at 621.283 kb on + strand, within GFF576 at 621.283 kb on + strand, within GFF576 at 621.283 kb on + strand, within GFF576 at 621.284 kb on - strand, within GFF576 at 621.284 kb on - strand, within GFF576 at 621.284 kb on - strand, within GFF576 at 621.370 kb on + strand at 621.370 kb on + strand at 621.370 kb on + strand at 621.370 kb on + strand at 621.370 kb on + strand at 621.370 kb on + strand at 621.370 kb on + strand at 621.370 kb on + strand at 621.370 kb on + strand at 621.371 kb on - strand at 621.371 kb on - strand at 621.371 kb on - strand at 621.371 kb on - strand at 621.371 kb on - strand at 621.371 kb on - strand at 621.371 kb on - strand at 621.371 kb on - strand at 621.371 kb on - strand at 621.371 kb on - strand at 621.371 kb on - strand at 621.371 kb on - strand at 621.602 kb on + strand, within GFF577 at 622.036 kb on + strand, within GFF577 at 622.036 kb on + strand, within GFF577 at 622.037 kb on - strand, within GFF577 at 622.328 kb on + strand at 622.328 kb on + strand at 622.329 kb on - strand at 622.329 kb on - strand at 622.329 kb on - strand at 622.377 kb on + strand at 622.518 kb on + strand at 622.518 kb on + strand at 622.518 kb on + strand at 622.518 kb on + strand at 622.518 kb on + strand at 622.518 kb on + strand at 622.518 kb on + strand at 622.518 kb on + strand at 622.518 kb on + strand at 622.519 kb on - strand at 622.519 kb on - strand at 622.519 kb on - strand at 622.519 kb on - strand at 622.519 kb on - strand at 622.519 kb on - strand at 622.519 kb on - strand at 622.519 kb on - strand at 622.519 kb on - strand at 622.519 kb on - strand at 622.519 kb on - strand at 622.519 kb on - strand at 622.519 kb on - strand at 622.519 kb on - strand at 622.522 kb on + strand at 622.522 kb on + strand at 622.522 kb on + strand at 622.522 kb on + strand at 622.522 kb on + strand at 622.522 kb on + strand at 622.522 kb on + strand at 622.522 kb on + strand at 622.522 kb on + strand at 622.522 kb on + strand at 622.523 kb on - strand at 622.523 kb on - strand at 622.523 kb on - strand at 622.523 kb on - strand at 622.523 kb on - strand at 622.523 kb on - strand at 622.523 kb on - strand at 622.523 kb on - strand at 622.523 kb on - strand at 622.523 kb on - strand at 622.523 kb on - strand at 622.523 kb on - strand at 622.523 kb on - strand at 622.523 kb on - strand at 622.523 kb on - strand at 622.826 kb on + strand, within GFF578 at 622.827 kb on - strand, within GFF578 at 622.827 kb on - strand, within GFF578 at 622.827 kb on - strand, within GFF578 at 622.827 kb on - strand, within GFF578 at 622.827 kb on - strand, within GFF578 at 622.860 kb on + strand, within GFF578 at 622.860 kb on + strand, within GFF578 at 622.860 kb on + strand, within GFF578 at 622.860 kb on + strand, within GFF578 at 622.860 kb on + strand, within GFF578 at 622.860 kb on + strand, within GFF578 at 622.860 kb on + strand, within GFF578 at 622.860 kb on + strand, within GFF578 at 622.860 kb on + strand, within GFF578 at 622.861 kb on - strand, within GFF578 at 622.861 kb on - strand, within GFF578 at 622.861 kb on - strand, within GFF578 at 622.861 kb on - strand, within GFF578 at 622.861 kb on - strand, within GFF578 at 622.861 kb on - strand, within GFF578 at 622.861 kb on - strand, within GFF578 at 623.118 kb on + strand, within GFF578 at 623.119 kb on - strand, within GFF578 at 623.217 kb on + strand, within GFF578 at 623.217 kb on + strand, within GFF578 at 623.217 kb on + strand, within GFF578 at 623.217 kb on + strand, within GFF578 at 623.218 kb on - strand, within GFF578 at 623.218 kb on - strand, within GFF578 at 623.218 kb on - strand, within GFF578 at 623.226 kb on + strand, within GFF578 at 623.226 kb on + strand, within GFF578 at 623.226 kb on + strand, within GFF578 at 623.227 kb on - strand, within GFF578 at 623.227 kb on - strand, within GFF578 at 623.227 kb on - strand, within GFF578 at 623.227 kb on - strand, within GFF578 at 623.227 kb on - strand, within GFF578 at 623.227 kb on - strand, within GFF578 at 623.227 kb on - strand, within GFF578 at 623.227 kb on - strand, within GFF578 at 623.227 kb on - strand, within GFF578 at 623.227 kb on - strand, within GFF578 at 623.227 kb on - strand, within GFF578 at 623.227 kb on - strand, within GFF578 at 623.227 kb on - strand, within GFF578
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 620,468 - GFF575 0.37 -3.1 620,468 - GFF575 0.37 -0.3 620,614 + GFF575 0.58 -1.8 620,614 + GFF575 0.58 -1.3 620,614 + GFF575 0.58 -1.4 620,614 + GFF575 0.58 +0.1 620,614 + GFF575 0.58 -1.3 620,614 + GFF575 0.58 -0.2 620,614 + GFF575 0.58 -1.1 620,614 + GFF575 0.58 -1.4 620,614 + GFF575 0.58 -2.1 620,614 + GFF575 0.58 -0.0 620,614 + GFF575 0.58 -0.5 620,614 + GFF575 0.58 -2.4 620,615 - GFF575 0.58 -1.1 620,615 - GFF575 0.58 -0.8 620,615 - GFF575 0.58 +0.5 620,615 - GFF575 0.58 +0.9 620,615 - GFF575 0.58 -1.6 620,615 - GFF575 0.58 -0.6 620,615 - GFF575 0.58 -1.3 620,615 - GFF575 0.58 -0.2 620,615 - GFF575 0.58 -1.3 620,615 - GFF575 0.58 +0.5 620,615 - GFF575 0.58 +0.1 620,615 - GFF575 0.58 +0.1 620,615 - GFF575 0.58 -1.1 620,615 - GFF575 0.58 -1.4 620,615 - GFF575 0.58 -0.8 620,615 - GFF575 0.58 -0.0 620,615 - GFF575 0.58 -1.9 620,615 - GFF575 0.58 -0.9 620,615 - GFF575 0.58 -1.0 620,773 + GFF575 0.80 -0.6 620,773 + GFF575 0.80 -0.9 620,774 - GFF575 0.80 +0.4 620,774 - GFF575 0.80 -0.7 620,774 - GFF575 0.80 +2.0 620,824 + GFF575 0.87 -1.3 620,824 + GFF575 0.87 -0.3 620,824 + GFF575 0.87 -1.1 620,824 + GFF575 0.87 +0.1 620,824 + GFF575 0.87 +0.0 620,824 + GFF575 0.87 -0.6 620,824 + GFF575 0.87 +1.4 620,824 + GFF575 0.87 -2.0 620,825 - GFF575 0.87 -0.6 620,825 - GFF575 0.87 -1.1 620,825 - GFF575 0.87 +0.4 620,825 - GFF575 0.87 -0.9 620,825 - GFF575 0.87 -0.6 620,825 - GFF575 0.87 +1.4 620,825 - GFF575 0.87 -2.2 620,825 - GFF575 0.87 -1.4 621,283 + GFF576 0.79 -0.9 621,283 + GFF576 0.79 -0.5 621,283 + GFF576 0.79 -1.2 621,283 + GFF576 0.79 -2.3 621,283 + GFF576 0.79 -1.0 621,284 - GFF576 0.80 -0.9 621,284 - GFF576 0.80 +0.4 621,284 - GFF576 0.80 -1.2 621,370 + +0.2 621,370 + -0.7 621,370 + -0.1 621,370 + -0.5 621,370 + -0.7 621,370 + +0.0 621,370 + +0.2 621,370 + +1.0 621,370 + +0.4 621,371 - -0.4 621,371 - -0.2 621,371 - -2.3 621,371 - +0.4 621,371 - -0.1 621,371 - -1.4 621,371 - -0.4 621,371 - -1.4 621,371 - -0.7 621,371 - -0.0 621,371 - -0.4 621,371 - -0.4 621,602 + GFF577 0.24 +0.1 622,036 + GFF577 0.71 -1.4 622,036 + GFF577 0.71 +0.6 622,037 - GFF577 0.72 -1.4 622,328 + -0.3 622,328 + +0.9 622,329 - +0.9 622,329 - -1.8 622,329 - -0.4 622,377 + -0.3 622,518 + -1.4 622,518 + +0.0 622,518 + -1.0 622,518 + -0.7 622,518 + +0.2 622,518 + -1.3 622,518 + -0.4 622,518 + -0.4 622,518 + -0.2 622,519 - -0.9 622,519 - -1.6 622,519 - +0.7 622,519 - +0.4 622,519 - +0.0 622,519 - +0.1 622,519 - +0.3 622,519 - +0.3 622,519 - +0.2 622,519 - -0.5 622,519 - -1.3 622,519 - -2.5 622,519 - +1.7 622,519 - -0.2 622,522 + +0.1 622,522 + +0.0 622,522 + -0.1 622,522 + +1.0 622,522 + +0.2 622,522 + -0.6 622,522 + -0.4 622,522 + -0.8 622,522 + +0.4 622,522 + -0.5 622,523 - -0.3 622,523 - +0.3 622,523 - +0.4 622,523 - -0.8 622,523 - -1.8 622,523 - +0.4 622,523 - -0.4 622,523 - -0.5 622,523 - +0.3 622,523 - -0.6 622,523 - -0.1 622,523 - +0.1 622,523 - +0.4 622,523 - -0.4 622,523 - -1.0 622,826 + GFF578 0.25 -0.6 622,827 - GFF578 0.25 -0.3 622,827 - GFF578 0.25 -0.9 622,827 - GFF578 0.25 -0.4 622,827 - GFF578 0.25 +0.3 622,827 - GFF578 0.25 +0.7 622,860 + GFF578 0.27 -0.1 622,860 + GFF578 0.27 +0.3 622,860 + GFF578 0.27 +0.2 622,860 + GFF578 0.27 -0.5 622,860 + GFF578 0.27 -0.5 622,860 + GFF578 0.27 -0.2 622,860 + GFF578 0.27 +2.7 622,860 + GFF578 0.27 +0.7 622,860 + GFF578 0.27 -0.4 622,861 - GFF578 0.27 -0.2 622,861 - GFF578 0.27 +0.5 622,861 - GFF578 0.27 +0.1 622,861 - GFF578 0.27 -1.1 622,861 - GFF578 0.27 +0.5 622,861 - GFF578 0.27 -0.3 622,861 - GFF578 0.27 -0.2 623,118 + GFF578 0.42 +0.4 623,119 - GFF578 0.42 +0.1 623,217 + GFF578 0.48 -0.6 623,217 + GFF578 0.48 -0.1 623,217 + GFF578 0.48 +1.0 623,217 + GFF578 0.48 +0.0 623,218 - GFF578 0.48 +0.1 623,218 - GFF578 0.48 -0.6 623,218 - GFF578 0.48 -0.2 623,226 + GFF578 0.48 -0.3 623,226 + GFF578 0.48 -0.7 623,226 + GFF578 0.48 -0.7 623,227 - GFF578 0.48 -0.7 623,227 - GFF578 0.48 +0.0 623,227 - GFF578 0.48 -0.2 623,227 - GFF578 0.48 +0.9 623,227 - GFF578 0.48 -0.6 623,227 - GFF578 0.48 +0.4 623,227 - GFF578 0.48 -1.4 623,227 - GFF578 0.48 -0.1 623,227 - GFF578 0.48 -0.2 623,227 - GFF578 0.48 -0.2 623,227 - GFF578 0.48 -0.2 623,227 - GFF578 0.48 +0.2 623,227 - GFF578 0.48 -0.3
Or see this region's nucleotide sequence