Strain Fitness in Variovorax sp. SCN45 around GFF576

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF574 and GFF575 overlap by 4 nucleotidesGFF575 and GFF576 are separated by 15 nucleotidesGFF576 and GFF577 are separated by 3 nucleotides GFF574 - Tol-Pal system-associated acyl-CoA thioesterase, at 619,742 to 620,200 GFF574 GFF575 - Tol-Pal system protein TolQ, at 620,197 to 620,919 GFF575 GFF576 - Tol biopolymer transport system, TolR protein, at 620,935 to 621,372 GFF576 GFF577 - TolA protein, at 621,376 to 622,299 GFF577 Position (kb) 620 621 622Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 619.969 kb on + strand, within GFF574at 619.970 kb on - strand, within GFF574at 620.008 kb on - strand, within GFF574at 620.026 kb on - strand, within GFF574at 620.134 kb on - strand, within GFF574at 620.165 kb on + strandat 620.165 kb on + strandat 620.165 kb on + strandat 620.166 kb on - strandat 620.166 kb on - strandat 620.166 kb on - strandat 620.166 kb on - strandat 620.188 kb on + strandat 620.188 kb on + strandat 620.188 kb on + strandat 620.188 kb on + strandat 620.188 kb on + strandat 620.188 kb on + strandat 620.188 kb on + strandat 620.188 kb on + strandat 620.188 kb on + strandat 620.188 kb on + strandat 620.188 kb on + strandat 620.188 kb on + strandat 620.188 kb on + strandat 620.188 kb on + strandat 620.188 kb on + strandat 620.188 kb on + strandat 620.188 kb on + strandat 620.188 kb on + strandat 620.188 kb on + strandat 620.189 kb on - strandat 620.189 kb on - strandat 620.189 kb on - strandat 620.189 kb on - strandat 620.189 kb on - strandat 620.189 kb on - strandat 620.189 kb on - strandat 620.189 kb on - strandat 620.189 kb on - strandat 620.189 kb on - strandat 620.189 kb on - strandat 620.189 kb on - strandat 620.189 kb on - strandat 620.210 kb on + strandat 620.210 kb on + strandat 620.210 kb on + strandat 620.210 kb on + strandat 620.210 kb on + strandat 620.210 kb on + strandat 620.210 kb on + strandat 620.210 kb on + strandat 620.210 kb on + strandat 620.210 kb on + strandat 620.211 kb on - strandat 620.211 kb on - strandat 620.211 kb on - strandat 620.211 kb on - strandat 620.211 kb on - strandat 620.211 kb on - strandat 620.211 kb on - strandat 620.211 kb on - strandat 620.211 kb on - strandat 620.211 kb on - strandat 620.211 kb on - strandat 620.211 kb on - strandat 620.211 kb on - strandat 620.211 kb on - strandat 620.314 kb on + strand, within GFF575at 620.314 kb on + strand, within GFF575at 620.314 kb on + strand, within GFF575at 620.314 kb on + strand, within GFF575at 620.315 kb on - strand, within GFF575at 620.315 kb on - strand, within GFF575at 620.468 kb on - strand, within GFF575at 620.468 kb on - strand, within GFF575at 620.614 kb on + strand, within GFF575at 620.614 kb on + strand, within GFF575at 620.614 kb on + strand, within GFF575at 620.614 kb on + strand, within GFF575at 620.614 kb on + strand, within GFF575at 620.614 kb on + strand, within GFF575at 620.614 kb on + strand, within GFF575at 620.614 kb on + strand, within GFF575at 620.614 kb on + strand, within GFF575at 620.614 kb on + strand, within GFF575at 620.614 kb on + strand, within GFF575at 620.614 kb on + strand, within GFF575at 620.615 kb on - strand, within GFF575at 620.615 kb on - strand, within GFF575at 620.615 kb on - strand, within GFF575at 620.615 kb on - strand, within GFF575at 620.615 kb on - strand, within GFF575at 620.615 kb on - strand, within GFF575at 620.615 kb on - strand, within GFF575at 620.615 kb on - strand, within GFF575at 620.615 kb on - strand, within GFF575at 620.615 kb on - strand, within GFF575at 620.615 kb on - strand, within GFF575at 620.615 kb on - strand, within GFF575at 620.615 kb on - strand, within GFF575at 620.615 kb on - strand, within GFF575at 620.615 kb on - strand, within GFF575at 620.615 kb on - strand, within GFF575at 620.615 kb on - strand, within GFF575at 620.615 kb on - strand, within GFF575at 620.615 kb on - strand, within GFF575at 620.773 kb on + strand, within GFF575at 620.773 kb on + strand, within GFF575at 620.774 kb on - strand, within GFF575at 620.774 kb on - strand, within GFF575at 620.774 kb on - strand, within GFF575at 620.824 kb on + strand, within GFF575at 620.824 kb on + strand, within GFF575at 620.824 kb on + strand, within GFF575at 620.824 kb on + strand, within GFF575at 620.824 kb on + strand, within GFF575at 620.824 kb on + strand, within GFF575at 620.824 kb on + strand, within GFF575at 620.824 kb on + strand, within GFF575at 620.825 kb on - strand, within GFF575at 620.825 kb on - strand, within GFF575at 620.825 kb on - strand, within GFF575at 620.825 kb on - strand, within GFF575at 620.825 kb on - strand, within GFF575at 620.825 kb on - strand, within GFF575at 620.825 kb on - strand, within GFF575at 620.825 kb on - strand, within GFF575at 621.283 kb on + strand, within GFF576at 621.283 kb on + strand, within GFF576at 621.283 kb on + strand, within GFF576at 621.283 kb on + strand, within GFF576at 621.283 kb on + strand, within GFF576at 621.284 kb on - strand, within GFF576at 621.284 kb on - strand, within GFF576at 621.284 kb on - strand, within GFF576at 621.370 kb on + strandat 621.370 kb on + strandat 621.370 kb on + strandat 621.370 kb on + strandat 621.370 kb on + strandat 621.370 kb on + strandat 621.370 kb on + strandat 621.370 kb on + strandat 621.370 kb on + strandat 621.371 kb on - strandat 621.371 kb on - strandat 621.371 kb on - strandat 621.371 kb on - strandat 621.371 kb on - strandat 621.371 kb on - strandat 621.371 kb on - strandat 621.371 kb on - strandat 621.371 kb on - strandat 621.371 kb on - strandat 621.371 kb on - strandat 621.371 kb on - strandat 621.602 kb on + strand, within GFF577at 622.036 kb on + strand, within GFF577at 622.036 kb on + strand, within GFF577at 622.037 kb on - strand, within GFF577at 622.328 kb on + strandat 622.328 kb on + strandat 622.329 kb on - strandat 622.329 kb on - strandat 622.329 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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619,969 + GFF574 0.49 -0.3
619,970 - GFF574 0.50 -0.8
620,008 - GFF574 0.58 -0.0
620,026 - GFF574 0.62 -0.5
620,134 - GFF574 0.85 -0.4
620,165 + -0.1
620,165 + +0.4
620,165 + +1.1
620,166 - -0.0
620,166 - +1.8
620,166 - -0.4
620,166 - -0.6
620,188 + +0.3
620,188 + -1.4
620,188 + -0.0
620,188 + +1.2
620,188 + +2.0
620,188 + -0.6
620,188 + +0.3
620,188 + -0.6
620,188 + -1.1
620,188 + +0.4
620,188 + -0.2
620,188 + -0.6
620,188 + +0.5
620,188 + +0.8
620,188 + -0.4
620,188 + -0.3
620,188 + +1.4
620,188 + -0.1
620,188 + -0.5
620,189 - -0.1
620,189 - +1.1
620,189 - +0.6
620,189 - -1.6
620,189 - +1.4
620,189 - -0.3
620,189 - -1.4
620,189 - +0.4
620,189 - +0.4
620,189 - -0.4
620,189 - -0.2
620,189 - +0.3
620,189 - +0.0
620,210 + -0.9
620,210 + -2.3
620,210 + -0.5
620,210 + +0.2
620,210 + -0.2
620,210 + -0.7
620,210 + -2.2
620,210 + -1.3
620,210 + -1.4
620,210 + -0.9
620,211 - -0.7
620,211 - -0.9
620,211 - -0.2
620,211 - -1.2
620,211 - -0.8
620,211 - -0.3
620,211 - -0.8
620,211 - -0.9
620,211 - -0.1
620,211 - -0.9
620,211 - +0.7
620,211 - -2.0
620,211 - -0.5
620,211 - -0.6
620,314 + GFF575 0.16 -0.9
620,314 + GFF575 0.16 -1.2
620,314 + GFF575 0.16 -0.5
620,314 + GFF575 0.16 -0.4
620,315 - GFF575 0.16 +0.1
620,315 - GFF575 0.16 -0.6
620,468 - GFF575 0.37 -3.1
620,468 - GFF575 0.37 -0.3
620,614 + GFF575 0.58 -1.8
620,614 + GFF575 0.58 -1.3
620,614 + GFF575 0.58 -1.4
620,614 + GFF575 0.58 +0.1
620,614 + GFF575 0.58 -1.3
620,614 + GFF575 0.58 -0.2
620,614 + GFF575 0.58 -1.1
620,614 + GFF575 0.58 -1.4
620,614 + GFF575 0.58 -2.1
620,614 + GFF575 0.58 -0.0
620,614 + GFF575 0.58 -0.5
620,614 + GFF575 0.58 -2.4
620,615 - GFF575 0.58 -1.1
620,615 - GFF575 0.58 -0.8
620,615 - GFF575 0.58 +0.5
620,615 - GFF575 0.58 +0.9
620,615 - GFF575 0.58 -1.6
620,615 - GFF575 0.58 -0.6
620,615 - GFF575 0.58 -1.3
620,615 - GFF575 0.58 -0.2
620,615 - GFF575 0.58 -1.3
620,615 - GFF575 0.58 +0.5
620,615 - GFF575 0.58 +0.1
620,615 - GFF575 0.58 +0.1
620,615 - GFF575 0.58 -1.1
620,615 - GFF575 0.58 -1.4
620,615 - GFF575 0.58 -0.8
620,615 - GFF575 0.58 -0.0
620,615 - GFF575 0.58 -1.9
620,615 - GFF575 0.58 -0.9
620,615 - GFF575 0.58 -1.0
620,773 + GFF575 0.80 -0.6
620,773 + GFF575 0.80 -0.9
620,774 - GFF575 0.80 +0.4
620,774 - GFF575 0.80 -0.7
620,774 - GFF575 0.80 +2.0
620,824 + GFF575 0.87 -1.3
620,824 + GFF575 0.87 -0.3
620,824 + GFF575 0.87 -1.1
620,824 + GFF575 0.87 +0.1
620,824 + GFF575 0.87 +0.0
620,824 + GFF575 0.87 -0.6
620,824 + GFF575 0.87 +1.4
620,824 + GFF575 0.87 -2.0
620,825 - GFF575 0.87 -0.6
620,825 - GFF575 0.87 -1.1
620,825 - GFF575 0.87 +0.4
620,825 - GFF575 0.87 -0.9
620,825 - GFF575 0.87 -0.6
620,825 - GFF575 0.87 +1.4
620,825 - GFF575 0.87 -2.2
620,825 - GFF575 0.87 -1.4
621,283 + GFF576 0.79 -0.9
621,283 + GFF576 0.79 -0.5
621,283 + GFF576 0.79 -1.2
621,283 + GFF576 0.79 -2.3
621,283 + GFF576 0.79 -1.0
621,284 - GFF576 0.80 -0.9
621,284 - GFF576 0.80 +0.4
621,284 - GFF576 0.80 -1.2
621,370 + +0.2
621,370 + -0.7
621,370 + -0.1
621,370 + -0.5
621,370 + -0.7
621,370 + +0.0
621,370 + +0.2
621,370 + +1.0
621,370 + +0.4
621,371 - -0.4
621,371 - -0.2
621,371 - -2.3
621,371 - +0.4
621,371 - -0.1
621,371 - -1.4
621,371 - -0.4
621,371 - -1.4
621,371 - -0.7
621,371 - -0.0
621,371 - -0.4
621,371 - -0.4
621,602 + GFF577 0.24 +0.1
622,036 + GFF577 0.71 -1.4
622,036 + GFF577 0.71 +0.6
622,037 - GFF577 0.72 -1.4
622,328 + -0.3
622,328 + +0.9
622,329 - +0.9
622,329 - -1.8
622,329 - -0.4

Or see this region's nucleotide sequence