Strain Fitness in Variovorax sp. SCN45 around GFF5610

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5609 and GFF5610 are separated by 192 nucleotidesGFF5610 and GFF5611 are separated by 82 nucleotides GFF5609 - Transcriptional regulator, LuxR family, at 229,585 to 230,565 GFF5609 GFF5610 - hypothetical protein, at 230,758 to 232,878 GFF5610 GFF5611 - BUG/TctC family periplasmic protein, at 232,961 to 233,935 GFF5611 Position (kb) 230 231 232 233Strain fitness (log2 ratio) -2 -1 0 1at 229.851 kb on - strand, within GFF5609at 229.962 kb on - strand, within GFF5609at 230.220 kb on - strand, within GFF5609at 230.339 kb on + strand, within GFF5609at 230.339 kb on + strand, within GFF5609at 230.339 kb on + strand, within GFF5609at 230.339 kb on + strand, within GFF5609at 230.340 kb on - strand, within GFF5609at 230.340 kb on - strand, within GFF5609at 230.340 kb on - strand, within GFF5609at 230.340 kb on - strand, within GFF5609at 230.514 kb on - strandat 230.514 kb on - strandat 230.640 kb on + strandat 230.703 kb on + strandat 230.704 kb on - strandat 230.704 kb on - strandat 230.704 kb on - strandat 230.704 kb on - strandat 230.704 kb on - strandat 230.704 kb on - strandat 230.742 kb on + strandat 230.743 kb on - strandat 230.743 kb on - strandat 230.757 kb on + strandat 230.757 kb on + strandat 230.757 kb on + strandat 230.757 kb on + strandat 230.758 kb on - strandat 230.758 kb on - strandat 230.758 kb on - strandat 230.758 kb on - strandat 230.758 kb on - strandat 230.758 kb on - strandat 230.758 kb on - strandat 230.758 kb on - strandat 230.758 kb on - strandat 231.031 kb on + strand, within GFF5610at 231.031 kb on + strand, within GFF5610at 231.031 kb on + strand, within GFF5610at 231.031 kb on + strand, within GFF5610at 231.031 kb on + strand, within GFF5610at 231.031 kb on + strand, within GFF5610at 231.032 kb on - strand, within GFF5610at 231.032 kb on - strand, within GFF5610at 231.032 kb on - strand, within GFF5610at 231.032 kb on - strand, within GFF5610at 231.032 kb on - strand, within GFF5610at 231.103 kb on + strand, within GFF5610at 231.103 kb on + strand, within GFF5610at 231.103 kb on + strand, within GFF5610at 231.592 kb on + strand, within GFF5610at 231.592 kb on + strand, within GFF5610at 231.592 kb on + strand, within GFF5610at 231.592 kb on + strand, within GFF5610at 231.592 kb on + strand, within GFF5610at 231.593 kb on - strand, within GFF5610at 231.593 kb on - strand, within GFF5610at 231.832 kb on + strand, within GFF5610at 231.832 kb on + strand, within GFF5610at 231.832 kb on + strand, within GFF5610at 231.833 kb on - strand, within GFF5610at 231.833 kb on - strand, within GFF5610at 231.838 kb on + strand, within GFF5610at 231.839 kb on - strand, within GFF5610at 231.839 kb on - strand, within GFF5610at 231.866 kb on - strand, within GFF5610at 231.961 kb on + strand, within GFF5610at 232.000 kb on + strand, within GFF5610at 232.000 kb on + strand, within GFF5610at 232.001 kb on - strand, within GFF5610at 232.001 kb on - strand, within GFF5610at 232.024 kb on + strand, within GFF5610at 232.024 kb on + strand, within GFF5610at 232.025 kb on - strand, within GFF5610at 232.025 kb on - strand, within GFF5610at 232.393 kb on + strand, within GFF5610at 232.393 kb on + strand, within GFF5610at 232.394 kb on - strand, within GFF5610at 232.394 kb on - strand, within GFF5610at 232.394 kb on - strand, within GFF5610at 232.394 kb on - strand, within GFF5610at 232.394 kb on - strand, within GFF5610at 232.711 kb on + strandat 232.711 kb on + strandat 232.711 kb on + strandat 232.712 kb on - strandat 232.771 kb on + strandat 232.771 kb on + strandat 232.777 kb on + strandat 232.971 kb on + strandat 232.972 kb on - strandat 233.178 kb on + strand, within GFF5611at 233.178 kb on + strand, within GFF5611at 233.179 kb on - strand, within GFF5611at 233.179 kb on - strand, within GFF5611at 233.179 kb on - strand, within GFF5611at 233.286 kb on + strand, within GFF5611at 233.287 kb on - strand, within GFF5611at 233.398 kb on - strand, within GFF5611at 233.532 kb on + strand, within GFF5611at 233.532 kb on + strand, within GFF5611at 233.532 kb on + strand, within GFF5611at 233.533 kb on - strand, within GFF5611at 233.533 kb on - strand, within GFF5611at 233.686 kb on - strand, within GFF5611

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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229,851 - GFF5609 0.27 +0.1
229,962 - GFF5609 0.38 +0.0
230,220 - GFF5609 0.65 -0.5
230,339 + GFF5609 0.77 -1.1
230,339 + GFF5609 0.77 +0.8
230,339 + GFF5609 0.77 -1.0
230,339 + GFF5609 0.77 -0.7
230,340 - GFF5609 0.77 -0.4
230,340 - GFF5609 0.77 -0.1
230,340 - GFF5609 0.77 -1.3
230,340 - GFF5609 0.77 -0.4
230,514 - -0.1
230,514 - +0.1
230,640 + -0.2
230,703 + -0.0
230,704 - -0.4
230,704 - -0.6
230,704 - -0.0
230,704 - +0.7
230,704 - -0.6
230,704 - -0.7
230,742 + +0.4
230,743 - -0.4
230,743 - -0.6
230,757 + +0.5
230,757 + +0.1
230,757 + +0.2
230,757 + -0.9
230,758 - -0.5
230,758 - +0.1
230,758 - -0.2
230,758 - +0.1
230,758 - -0.9
230,758 - +0.9
230,758 - -0.2
230,758 - -0.2
230,758 - -0.6
231,031 + GFF5610 0.13 -0.4
231,031 + GFF5610 0.13 -0.3
231,031 + GFF5610 0.13 -0.4
231,031 + GFF5610 0.13 +0.2
231,031 + GFF5610 0.13 -0.8
231,031 + GFF5610 0.13 -0.3
231,032 - GFF5610 0.13 -0.5
231,032 - GFF5610 0.13 +0.2
231,032 - GFF5610 0.13 -0.9
231,032 - GFF5610 0.13 -1.1
231,032 - GFF5610 0.13 -0.1
231,103 + GFF5610 0.16 +0.2
231,103 + GFF5610 0.16 -0.2
231,103 + GFF5610 0.16 -1.1
231,592 + GFF5610 0.39 +0.0
231,592 + GFF5610 0.39 -0.9
231,592 + GFF5610 0.39 -0.2
231,592 + GFF5610 0.39 -0.4
231,592 + GFF5610 0.39 -1.8
231,593 - GFF5610 0.39 -0.3
231,593 - GFF5610 0.39 +0.1
231,832 + GFF5610 0.51 +0.9
231,832 + GFF5610 0.51 -1.1
231,832 + GFF5610 0.51 -0.0
231,833 - GFF5610 0.51 -0.4
231,833 - GFF5610 0.51 -1.3
231,838 + GFF5610 0.51 +1.6
231,839 - GFF5610 0.51 -2.0
231,839 - GFF5610 0.51 -0.4
231,866 - GFF5610 0.52 -2.4
231,961 + GFF5610 0.57 -0.6
232,000 + GFF5610 0.59 -1.2
232,000 + GFF5610 0.59 -0.4
232,001 - GFF5610 0.59 -0.1
232,001 - GFF5610 0.59 +0.5
232,024 + GFF5610 0.60 +0.3
232,024 + GFF5610 0.60 -0.0
232,025 - GFF5610 0.60 -2.3
232,025 - GFF5610 0.60 -0.4
232,393 + GFF5610 0.77 -0.1
232,393 + GFF5610 0.77 -0.4
232,394 - GFF5610 0.77 -0.3
232,394 - GFF5610 0.77 +0.3
232,394 - GFF5610 0.77 +0.1
232,394 - GFF5610 0.77 -0.1
232,394 - GFF5610 0.77 -0.2
232,711 + +0.0
232,711 + +0.3
232,711 + +0.3
232,712 - -0.9
232,771 + -1.2
232,771 + -0.4
232,777 + +0.3
232,971 + +0.8
232,972 - -0.2
233,178 + GFF5611 0.22 -0.0
233,178 + GFF5611 0.22 -1.3
233,179 - GFF5611 0.22 +0.1
233,179 - GFF5611 0.22 -0.4
233,179 - GFF5611 0.22 +0.6
233,286 + GFF5611 0.33 +1.6
233,287 - GFF5611 0.33 -0.2
233,398 - GFF5611 0.45 +1.6
233,532 + GFF5611 0.59 -0.1
233,532 + GFF5611 0.59 -0.2
233,532 + GFF5611 0.59 +0.3
233,533 - GFF5611 0.59 +0.2
233,533 - GFF5611 0.59 -0.4
233,686 - GFF5611 0.74 -0.2

Or see this region's nucleotide sequence