Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5599 and GFF5600 overlap by 4 nucleotides GFF5600 and GFF5601 are separated by 9 nucleotides GFF5601 and GFF5602 are separated by 132 nucleotides GFF5602 and GFF5603 are separated by 186 nucleotides
GFF5599 - hypothetical protein, at 219,656 to 220,087
GFF5599
GFF5600 - no description, at 220,084 to 220,224
GFF5600
GFF5601 - Predicted hydrolase of the alpha/beta-hydrolase fold, at 220,234 to 220,920
GFF5601
GFF5602 - FIG00348944: hypothetical protein, at 221,053 to 221,559
GFF5602
GFF5603 - D-xylose ABC transporter, substrate-binding protein XylF, at 221,746 to 222,768
GFF5603
Position (kb) 221
222 Strain fitness (log2 ratio) -2
-1
0
1
2 at 220.159 kb on + strand, within GFF5600 at 220.159 kb on + strand, within GFF5600 at 220.160 kb on - strand, within GFF5600 at 220.160 kb on - strand, within GFF5600 at 220.178 kb on - strand, within GFF5600 at 220.239 kb on + strand at 220.239 kb on + strand at 220.239 kb on + strand at 220.239 kb on + strand at 220.239 kb on + strand at 220.239 kb on + strand at 220.240 kb on - strand at 220.240 kb on - strand at 220.240 kb on - strand at 220.432 kb on + strand, within GFF5601 at 220.432 kb on + strand, within GFF5601 at 220.433 kb on - strand, within GFF5601 at 220.433 kb on - strand, within GFF5601 at 220.433 kb on - strand, within GFF5601 at 221.059 kb on + strand at 221.059 kb on + strand at 221.059 kb on + strand at 221.059 kb on + strand at 221.059 kb on + strand at 221.059 kb on + strand at 221.059 kb on + strand at 221.060 kb on - strand at 221.060 kb on - strand at 221.060 kb on - strand at 221.060 kb on - strand at 221.060 kb on - strand at 221.060 kb on - strand at 221.060 kb on - strand at 221.170 kb on + strand, within GFF5602 at 221.171 kb on - strand, within GFF5602 at 221.222 kb on + strand, within GFF5602 at 221.223 kb on - strand, within GFF5602 at 221.223 kb on - strand, within GFF5602 at 221.223 kb on - strand, within GFF5602 at 221.223 kb on - strand, within GFF5602 at 221.223 kb on - strand, within GFF5602 at 221.223 kb on - strand, within GFF5602 at 221.288 kb on - strand, within GFF5602 at 221.431 kb on + strand, within GFF5602 at 221.671 kb on + strand at 221.689 kb on - strand at 221.692 kb on + strand at 221.700 kb on + strand at 221.908 kb on + strand, within GFF5603 at 221.908 kb on + strand, within GFF5603 at 221.908 kb on + strand, within GFF5603 at 221.908 kb on + strand, within GFF5603 at 221.908 kb on + strand, within GFF5603 at 221.908 kb on + strand, within GFF5603 at 221.908 kb on + strand, within GFF5603 at 221.909 kb on - strand, within GFF5603 at 221.909 kb on - strand, within GFF5603 at 221.909 kb on - strand, within GFF5603 at 221.909 kb on - strand, within GFF5603 at 222.071 kb on - strand, within GFF5603 at 222.071 kb on - strand, within GFF5603 at 222.071 kb on - strand, within GFF5603 at 222.071 kb on - strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.103 kb on + strand, within GFF5603 at 222.104 kb on - strand, within GFF5603 at 222.104 kb on - strand, within GFF5603 at 222.104 kb on - strand, within GFF5603 at 222.104 kb on - strand, within GFF5603 at 222.104 kb on - strand, within GFF5603 at 222.104 kb on - strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.178 kb on + strand, within GFF5603 at 222.179 kb on - strand, within GFF5603 at 222.179 kb on - strand, within GFF5603 at 222.179 kb on - strand, within GFF5603 at 222.179 kb on - strand, within GFF5603 at 222.179 kb on - strand, within GFF5603 at 222.179 kb on - strand, within GFF5603 at 222.179 kb on - strand, within GFF5603 at 222.179 kb on - strand, within GFF5603 at 222.179 kb on - strand, within GFF5603 at 222.295 kb on + strand, within GFF5603 at 222.295 kb on + strand, within GFF5603 at 222.295 kb on + strand, within GFF5603 at 222.296 kb on - strand, within GFF5603 at 222.296 kb on - strand, within GFF5603
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 220,159 + GFF5600 0.53 +0.2 220,159 + GFF5600 0.53 -0.6 220,160 - GFF5600 0.54 -0.2 220,160 - GFF5600 0.54 -0.1 220,178 - GFF5600 0.67 +0.1 220,239 + +0.1 220,239 + -0.4 220,239 + -0.2 220,239 + -0.2 220,239 + -0.1 220,239 + -0.1 220,240 - +0.4 220,240 - -0.1 220,240 - -0.3 220,432 + GFF5601 0.29 +0.9 220,432 + GFF5601 0.29 -0.1 220,433 - GFF5601 0.29 -0.1 220,433 - GFF5601 0.29 +1.0 220,433 - GFF5601 0.29 -0.7 221,059 + -0.2 221,059 + -0.1 221,059 + -1.6 221,059 + -1.4 221,059 + +1.4 221,059 + -0.4 221,059 + +1.4 221,060 - -0.2 221,060 - -0.4 221,060 - -0.5 221,060 - -0.3 221,060 - -0.1 221,060 - +0.0 221,060 - +0.2 221,170 + GFF5602 0.23 +0.0 221,171 - GFF5602 0.23 +0.2 221,222 + GFF5602 0.33 -0.2 221,223 - GFF5602 0.34 -0.2 221,223 - GFF5602 0.34 +0.4 221,223 - GFF5602 0.34 -0.1 221,223 - GFF5602 0.34 -0.1 221,223 - GFF5602 0.34 -0.1 221,223 - GFF5602 0.34 +0.7 221,288 - GFF5602 0.46 +0.6 221,431 + GFF5602 0.75 -0.1 221,671 + +1.0 221,689 - -1.7 221,692 + +0.2 221,700 + +0.2 221,908 + GFF5603 0.16 -1.8 221,908 + GFF5603 0.16 -0.1 221,908 + GFF5603 0.16 -0.7 221,908 + GFF5603 0.16 +0.2 221,908 + GFF5603 0.16 +1.1 221,908 + GFF5603 0.16 -0.7 221,908 + GFF5603 0.16 +0.3 221,909 - GFF5603 0.16 -1.8 221,909 - GFF5603 0.16 +0.0 221,909 - GFF5603 0.16 +0.2 221,909 - GFF5603 0.16 -1.3 222,071 - GFF5603 0.32 -0.0 222,071 - GFF5603 0.32 +0.3 222,071 - GFF5603 0.32 -0.6 222,071 - GFF5603 0.32 +0.4 222,103 + GFF5603 0.35 -0.4 222,103 + GFF5603 0.35 -0.1 222,103 + GFF5603 0.35 +0.6 222,103 + GFF5603 0.35 +2.2 222,103 + GFF5603 0.35 +0.3 222,103 + GFF5603 0.35 -0.6 222,103 + GFF5603 0.35 -0.4 222,103 + GFF5603 0.35 +0.1 222,103 + GFF5603 0.35 +1.3 222,103 + GFF5603 0.35 -0.7 222,103 + GFF5603 0.35 -0.2 222,103 + GFF5603 0.35 +0.6 222,104 - GFF5603 0.35 +0.4 222,104 - GFF5603 0.35 -0.1 222,104 - GFF5603 0.35 -0.1 222,104 - GFF5603 0.35 +0.5 222,104 - GFF5603 0.35 +0.6 222,104 - GFF5603 0.35 -0.9 222,178 + GFF5603 0.42 -0.2 222,178 + GFF5603 0.42 -1.1 222,178 + GFF5603 0.42 +0.3 222,178 + GFF5603 0.42 -0.3 222,178 + GFF5603 0.42 -0.7 222,178 + GFF5603 0.42 -1.6 222,178 + GFF5603 0.42 +0.1 222,178 + GFF5603 0.42 +0.7 222,178 + GFF5603 0.42 -0.4 222,178 + GFF5603 0.42 -0.2 222,178 + GFF5603 0.42 -0.3 222,178 + GFF5603 0.42 +1.9 222,178 + GFF5603 0.42 -0.9 222,179 - GFF5603 0.42 -1.8 222,179 - GFF5603 0.42 +0.4 222,179 - GFF5603 0.42 -0.3 222,179 - GFF5603 0.42 -0.4 222,179 - GFF5603 0.42 +0.3 222,179 - GFF5603 0.42 +0.3 222,179 - GFF5603 0.42 +0.5 222,179 - GFF5603 0.42 +0.8 222,179 - GFF5603 0.42 +0.9 222,295 + GFF5603 0.54 +0.6 222,295 + GFF5603 0.54 -0.2 222,295 + GFF5603 0.54 -0.6 222,296 - GFF5603 0.54 +0.9 222,296 - GFF5603 0.54 -0.2
Or see this region's nucleotide sequence