Strain Fitness in Variovorax sp. SCN45 around GFF5383

Experiment: no phage control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no phage control
7,940	+				+0.5
7,940	+				+0.2
7,940	+				-0.2
8,215	+		GFF5382	0.28	+0.3
8,215	+		GFF5382	0.28	-0.7
8,215	+		GFF5382	0.28	-0.4
8,215	+		GFF5382	0.28	+0.1
8,216	-		GFF5382	0.28	-0.2
8,216	-		GFF5382	0.28	-0.3
8,216	-		GFF5382	0.28	-0.2
8,216	-		GFF5382	0.28	-0.1
8,216	-		GFF5382	0.28	-0.2
8,216	-		GFF5382	0.28	+0.3
8,216	-		GFF5382	0.28	-0.4
8,408	+		GFF5382	0.48	+0.7
8,408	+		GFF5382	0.48	-1.4
8,408	+		GFF5382	0.48	-0.4
8,408	+		GFF5382	0.48	+1.1
8,408	+		GFF5382	0.48	-0.1
8,408	+		GFF5382	0.48	-0.5
8,408	+		GFF5382	0.48	-1.1
8,408	+		GFF5382	0.48	+0.3
8,408	+		GFF5382	0.48	+0.0
8,408	+		GFF5382	0.48	-2.4
8,408	+		GFF5382	0.48	+0.2
8,408	+		GFF5382	0.48	-1.1
8,408	+		GFF5382	0.48	+1.1
8,408	+		GFF5382	0.48	-0.1
8,408	+		GFF5382	0.48	+0.4
8,408	+		GFF5382	0.48	-0.4
8,408	+		GFF5382	0.48	+0.5
8,408	+		GFF5382	0.48	-0.5
8,408	+		GFF5382	0.48	+0.8
8,408	+		GFF5382	0.48	-1.7
8,408	+		GFF5382	0.48	+0.3
8,408	+		GFF5382	0.48	+0.5
8,408	+		GFF5382	0.48	+0.1
8,408	+		GFF5382	0.48	-0.5
8,409	-		GFF5382	0.48	-1.2
8,409	-		GFF5382	0.48	-0.1
8,409	-		GFF5382	0.48	-0.4
8,409	-		GFF5382	0.48	-0.1
8,409	-		GFF5382	0.48	-0.4
8,409	-		GFF5382	0.48	+1.0
8,409	-		GFF5382	0.48	+0.2
8,409	-		GFF5382	0.48	+0.9
8,409	-		GFF5382	0.48	+0.9
8,409	-		GFF5382	0.48	-0.5
8,409	-		GFF5382	0.48	-0.1
8,409	-		GFF5382	0.48	-0.2
8,409	-		GFF5382	0.48	+0.4
8,409	-		GFF5382	0.48	+0.9
8,409	-		GFF5382	0.48	+0.7
8,409	-		GFF5382	0.48	+0.0
8,409	-		GFF5382	0.48	+0.3
8,409	-		GFF5382	0.48	-0.3
8,409	-		GFF5382	0.48	+1.9
8,409	-		GFF5382	0.48	-0.6
8,409	-		GFF5382	0.48	+0.6
8,409	-		GFF5382	0.48	-0.6
8,409	-		GFF5382	0.48	-0.4
8,409	-		GFF5382	0.48	+0.5
8,456	+		GFF5382	0.52	-0.1
8,456	+		GFF5382	0.52	-0.8
8,456	+		GFF5382	0.52	+0.4
8,456	+		GFF5382	0.52	-0.8
8,456	+		GFF5382	0.52	-1.2
8,456	+		GFF5382	0.52	+0.4
8,456	+		GFF5382	0.52	+0.3
8,456	+		GFF5382	0.52	-0.9
8,456	+		GFF5382	0.52	-1.1
8,456	+		GFF5382	0.52	-0.2
8,456	+		GFF5382	0.52	+0.3
8,456	+		GFF5382	0.52	-0.1
8,457	-		GFF5382	0.52	-0.4
8,457	-		GFF5382	0.52	+0.4
8,457	-		GFF5382	0.52	-0.8
8,457	-		GFF5382	0.52	-0.1
8,457	-		GFF5382	0.52	+0.1
8,457	-		GFF5382	0.52	+0.3
8,457	-		GFF5382	0.52	-0.4
8,457	-		GFF5382	0.52	+0.6
8,457	-		GFF5382	0.52	-0.5
8,457	-		GFF5382	0.52	-0.4
8,457	-		GFF5382	0.52	+1.0
8,457	-		GFF5382	0.52	+0.3
8,457	-		GFF5382	0.52	-0.7
8,457	-		GFF5382	0.52	+0.2
8,609	+		GFF5382	0.68	-0.3
8,609	+		GFF5382	0.68	-1.2
8,609	+		GFF5382	0.68	-0.0
8,610	-		GFF5382	0.68	-0.5
8,658	-		GFF5382	0.73	+0.1
8,658	-		GFF5382	0.73	-0.2
8,823	+		GFF5382	0.90	-0.1
8,823	+		GFF5382	0.90	+0.3
8,823	+		GFF5382	0.90	-0.2
8,824	-		GFF5382	0.90	+0.7
8,824	-		GFF5382	0.90	-0.8
8,824	-		GFF5382	0.90	-0.7
8,912	+				-0.3
8,913	-				-0.3
8,913	-				-0.5
8,913	-				+0.3
8,913	-				+0.3
8,913	-				+0.9
8,913	-				+0.3
9,006	+				-0.6
9,006	+				-0.9
9,006	+				+0.1
9,006	+				+0.8
9,006	+				+0.3
9,006	+				-0.4
9,006	+				+0.6
9,006	+				-0.4
9,006	+				-0.9
9,006	+				-0.3
9,007	-				-1.2
9,007	-				+0.7
9,007	-				-1.2
9,007	-				-0.6
9,071	+				-0.3
9,071	+				-1.0
9,071	+				+0.2
9,071	+				-3.1
9,071	+				+0.1
9,071	+				-0.1
9,071	+				+0.0
9,071	+				-0.9
9,071	+				-0.3
9,071	+				+1.1
9,071	+				-0.7
9,071	+				-0.8
9,071	+				-0.6
9,071	+				-0.4
9,072	-				+0.3
9,072	-				+0.3
9,072	-				-0.4
9,072	-				-1.0
9,072	-				+0.3
9,072	-				+0.7
9,072	-				+0.3
9,072	-				+0.3
9,072	-				-0.4
9,072	-				+0.2
9,072	-				-0.3
9,072	-				+0.0
9,072	-				-1.3
9,072	-				-0.3
9,072	-				+0.0
9,072	-				+1.9
9,072	-				+0.8
9,072	-				-0.2
9,237	-		GFF5383	0.10	+0.1
9,548	+		GFF5383	0.21	-0.9
9,548	+		GFF5383	0.21	+1.3
9,548	+		GFF5383	0.21	-0.9
9,549	-		GFF5383	0.21	-1.6
9,549	-		GFF5383	0.21	-0.7
9,549	-		GFF5383	0.21	-0.7
11,895	-				-0.4
11,895	-				+0.2
11,895	-				-0.2
11,895	-				+2.2
11,895	-				+0.7
11,895	-				-0.2
11,895	-				-0.5
11,895	-				+0.0
11,895	-				+0.7
11,895	-				-1.1
11,895	-				+1.5
11,895	-				-1.1
11,895	-				+1.0
11,895	-				-0.2
11,895	-				-1.1
11,895	-				+0.7
11,895	-				-0.5
11,895	-				+1.9
11,895	-				+0.1
11,905	+				+0.4
11,905	+				+0.3
11,905	+				-0.4
11,905	+				-0.9
11,905	+				+0.3
11,905	+				+0.3
11,905	+				-0.3
11,906	-				+0.1
11,906	-				-0.1
11,906	-				-1.3
11,906	-				-0.4
11,906	-				+0.2
11,906	-				+0.7
11,906	-				+0.6
11,906	-				-0.4
11,906	-				-0.4
11,906	-				+0.4
11,907	+				-0.3
11,907	+				+0.8
11,907	+				+0.7
11,907	+				+0.5
11,907	+				-0.9
11,907	+				-0.0
11,908	-				-0.1
11,908	-				+0.1
11,908	-				-1.0
11,908	-				-0.5
11,908	-				-1.4
11,908	-				+0.0
11,908	-				+1.5
11,908	-				-0.1
11,908	-				-0.2
11,908	-				-1.4
11,908	-				-0.9
11,908	-				-1.1
11,908	-				+0.1
11,908	-				-0.3
11,908	-				+1.1
11,908	-				+0.4
11,908	-				-0.9
11,954	+				-0.7
11,954	+				+0.9
11,954	+				+0.4
11,954	+				+0.0
11,954	+				+0.4
11,954	+				-0.4
11,954	+				-0.1
11,955	-				+0.1
11,955	-				+0.0
11,955	-				-0.5
11,955	-				-1.1
11,955	-				-0.5
11,955	-				+0.3
11,955	-				-1.1
11,955	-				-1.2
11,963	+				-0.4
11,963	+				-0.1
11,963	+				+0.9
11,963	+				+1.0
11,963	+				-0.6
11,963	+				+0.0
11,963	+				+0.2
11,963	+				-0.3
11,963	+				+0.3
11,964	-				-1.4
11,964	-				+0.4
11,964	-				+0.7
11,964	-				+0.3
12,095	+		GFF5384	0.12	-0.2
12,095	+		GFF5384	0.12	-0.3
12,095	+		GFF5384	0.12	-0.7
12,096	-		GFF5384	0.12	-0.9
12,096	-		GFF5384	0.12	-1.3
12,096	-		GFF5384	0.12	-0.0
12,096	-		GFF5384	0.12	-0.8
12,096	-		GFF5384	0.12	-0.8
12,096	-		GFF5384	0.12	-0.7
12,096	-		GFF5384	0.12	-0.4
12,173	+		GFF5384	0.25	-0.7
12,173	+		GFF5384	0.25	-0.6
12,173	+		GFF5384	0.25	+0.0
12,173	+		GFF5384	0.25	-0.9
12,173	+		GFF5384	0.25	+0.6
12,173	+		GFF5384	0.25	-0.1
12,174	-		GFF5384	0.25	-0.5
12,174	-		GFF5384	0.25	-0.3
12,174	-		GFF5384	0.25	-1.8
12,174	-		GFF5384	0.25	+1.3
12,174	-		GFF5384	0.25	-0.4
12,174	-		GFF5384	0.25	-0.4
12,290	+		GFF5384	0.43	+0.4
12,290	+		GFF5384	0.43	+0.1
12,290	+		GFF5384	0.43	-0.4
12,290	+		GFF5384	0.43	-0.7
12,290	+		GFF5384	0.43	+0.9
12,290	+		GFF5384	0.43	-0.2
12,290	+		GFF5384	0.43	+0.5
12,290	+		GFF5384	0.43	-0.6
12,290	+		GFF5384	0.43	-0.1
12,290	+		GFF5384	0.43	-0.1
12,290	+		GFF5384	0.43	-0.3
12,291	-		GFF5384	0.43	-0.9
12,291	-		GFF5384	0.43	-1.5
12,291	-		GFF5384	0.43	-0.7
12,291	-		GFF5384	0.43	-0.2
12,291	-		GFF5384	0.43	-0.1
12,291	-		GFF5384	0.43	-0.1
12,291	-		GFF5384	0.43	-0.7
12,291	-		GFF5384	0.43	-1.3
12,291	-		GFF5384	0.43	-0.1
12,291	-		GFF5384	0.43	-0.7
12,291	-		GFF5384	0.43	-1.4
12,291	-		GFF5384	0.43	-1.6
12,291	-		GFF5384	0.43	+0.4
12,291	-		GFF5384	0.43	-0.9
12,291	-		GFF5384	0.43	-0.0
12,292	+		GFF5384	0.44	-0.1
12,292	+		GFF5384	0.44	+0.9
12,292	+		GFF5384	0.44	+0.5
12,292	+		GFF5384	0.44	-0.3
12,292	+		GFF5384	0.44	-0.9
12,292	+		GFF5384	0.44	-0.4
12,292	+		GFF5384	0.44	+0.1
12,292	+		GFF5384	0.44	-0.6
12,292	+		GFF5384	0.44	-1.0
12,292	+		GFF5384	0.44	-0.7
12,292	+		GFF5384	0.44	+0.1
12,292	+		GFF5384	0.44	-0.5
12,292	+		GFF5384	0.44	-0.5
12,292	+		GFF5384	0.44	-2.1
12,292	+		GFF5384	0.44	-0.3
12,293	-		GFF5384	0.44	-0.0
12,293	-		GFF5384	0.44	-0.2
12,293	-		GFF5384	0.44	-0.0
12,293	-		GFF5384	0.44	-0.5
12,293	-		GFF5384	0.44	-0.9
12,293	-		GFF5384	0.44	+0.1
12,293	-		GFF5384	0.44	-1.0
12,293	-		GFF5384	0.44	-0.4
12,293	-		GFF5384	0.44	-0.7
12,293	-		GFF5384	0.44	+0.1
12,293	-		GFF5384	0.44	-0.7
12,335	+		GFF5384	0.50	-0.1
12,335	+		GFF5384	0.50	+0.3
12,335	+		GFF5384	0.50	+0.5
12,335	+		GFF5384	0.50	+0.1
12,335	+		GFF5384	0.50	-0.1
12,335	+		GFF5384	0.50	+0.9
12,335	+		GFF5384	0.50	-0.2
12,335	+		GFF5384	0.50	-0.2
12,336	-		GFF5384	0.51	-0.7
12,336	-		GFF5384	0.51	-0.1
12,336	-		GFF5384	0.51	-0.6
12,336	-		GFF5384	0.51	-2.0
12,336	-		GFF5384	0.51	-0.9
12,336	-		GFF5384	0.51	-1.1
12,336	-		GFF5384	0.51	-0.4
12,341	+		GFF5384	0.51	+0.1
12,342	-		GFF5384	0.52	-2.1
12,342	-		GFF5384	0.52	-0.5
12,342	-		GFF5384	0.52	-0.4
12,342	-		GFF5384	0.52	-0.1
12,365	+		GFF5384	0.55	-0.5
12,365	+		GFF5384	0.55	-0.4
12,365	+		GFF5384	0.55	-0.3
12,365	+		GFF5384	0.55	-1.3
12,365	+		GFF5384	0.55	-3.1
12,365	+		GFF5384	0.55	+0.5
12,366	-		GFF5384	0.55	-0.0
12,366	-		GFF5384	0.55	+0.1
12,366	-		GFF5384	0.55	-1.7
12,366	-		GFF5384	0.55	+0.2
12,366	-		GFF5384	0.55	+0.7
12,366	-		GFF5384	0.55	+1.9