Strain Fitness in Variovorax sp. SCN45 around GFF5298

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5296 and GFF5297 overlap by 4 nucleotidesGFF5297 and GFF5298 are separated by 171 nucleotidesGFF5298 and GFF5299 are separated by 71 nucleotides GFF5296 - putative iron-regulated membrane protein, at 169,982 to 171,154 GFF5296 GFF5297 - hypothetical protein, at 171,151 to 171,345 GFF5297 GFF5298 - FIG01204242: hypothetical protein, at 171,517 to 173,733 GFF5298 GFF5299 - TonB-dependent receptor, at 173,805 to 175,940 GFF5299 Position (kb) 171 172 173 174Strain fitness (log2 ratio) -2 -1 0 1 2 3at 170.646 kb on - strand, within GFF5296at 170.646 kb on - strand, within GFF5296at 170.646 kb on - strand, within GFF5296at 170.646 kb on - strand, within GFF5296at 170.654 kb on + strand, within GFF5296at 170.655 kb on - strand, within GFF5296at 170.655 kb on - strand, within GFF5296at 170.684 kb on + strand, within GFF5296at 170.685 kb on - strand, within GFF5296at 170.930 kb on + strand, within GFF5296at 170.931 kb on - strand, within GFF5296at 170.931 kb on - strand, within GFF5296at 170.976 kb on - strand, within GFF5296at 171.050 kb on + strandat 171.051 kb on - strandat 171.051 kb on - strandat 171.343 kb on + strandat 171.413 kb on + strandat 171.414 kb on - strandat 171.516 kb on + strandat 171.516 kb on + strandat 171.516 kb on + strandat 171.516 kb on + strandat 171.516 kb on + strandat 171.516 kb on + strandat 171.517 kb on - strandat 171.517 kb on - strandat 171.517 kb on - strandat 171.517 kb on - strandat 171.517 kb on - strandat 171.517 kb on - strandat 171.576 kb on - strandat 171.576 kb on - strandat 171.736 kb on + strandat 171.983 kb on - strand, within GFF5298at 171.994 kb on + strand, within GFF5298at 171.994 kb on + strand, within GFF5298at 171.994 kb on + strand, within GFF5298at 171.994 kb on + strand, within GFF5298at 171.995 kb on - strand, within GFF5298at 171.995 kb on - strand, within GFF5298at 172.072 kb on + strand, within GFF5298at 172.072 kb on + strand, within GFF5298at 172.073 kb on - strand, within GFF5298at 172.073 kb on - strand, within GFF5298at 172.120 kb on + strand, within GFF5298at 172.120 kb on + strand, within GFF5298at 172.121 kb on - strand, within GFF5298at 172.121 kb on - strand, within GFF5298at 172.121 kb on - strand, within GFF5298at 172.121 kb on - strand, within GFF5298at 172.121 kb on - strand, within GFF5298at 172.156 kb on + strand, within GFF5298at 172.156 kb on + strand, within GFF5298at 172.157 kb on - strand, within GFF5298at 172.189 kb on + strand, within GFF5298at 172.273 kb on + strand, within GFF5298at 172.273 kb on + strand, within GFF5298at 172.273 kb on + strand, within GFF5298at 172.273 kb on + strand, within GFF5298at 172.273 kb on + strand, within GFF5298at 172.273 kb on + strand, within GFF5298at 172.274 kb on - strand, within GFF5298at 172.280 kb on - strand, within GFF5298at 172.295 kb on - strand, within GFF5298at 172.295 kb on - strand, within GFF5298at 172.295 kb on - strand, within GFF5298at 172.303 kb on + strand, within GFF5298at 172.303 kb on + strand, within GFF5298at 172.303 kb on + strand, within GFF5298at 172.303 kb on + strand, within GFF5298at 172.303 kb on + strand, within GFF5298at 172.303 kb on + strand, within GFF5298at 172.303 kb on + strand, within GFF5298at 172.304 kb on - strand, within GFF5298at 172.304 kb on - strand, within GFF5298at 172.304 kb on - strand, within GFF5298at 172.304 kb on - strand, within GFF5298at 172.309 kb on + strand, within GFF5298at 172.310 kb on - strand, within GFF5298at 172.318 kb on + strand, within GFF5298at 172.318 kb on + strand, within GFF5298at 172.319 kb on - strand, within GFF5298at 172.319 kb on - strand, within GFF5298at 172.447 kb on + strand, within GFF5298at 172.448 kb on - strand, within GFF5298at 172.501 kb on + strand, within GFF5298at 172.501 kb on + strand, within GFF5298at 172.502 kb on - strand, within GFF5298at 172.502 kb on - strand, within GFF5298at 172.505 kb on + strand, within GFF5298at 172.505 kb on + strand, within GFF5298at 172.505 kb on + strand, within GFF5298at 172.506 kb on - strand, within GFF5298at 172.509 kb on + strand, within GFF5298at 172.510 kb on - strand, within GFF5298at 172.556 kb on - strand, within GFF5298at 172.834 kb on + strand, within GFF5298at 172.835 kb on - strand, within GFF5298at 172.835 kb on - strand, within GFF5298at 172.885 kb on + strand, within GFF5298at 172.886 kb on - strand, within GFF5298at 172.886 kb on - strand, within GFF5298at 172.897 kb on + strand, within GFF5298at 172.991 kb on - strand, within GFF5298at 173.009 kb on - strand, within GFF5298at 173.009 kb on - strand, within GFF5298at 173.009 kb on - strand, within GFF5298at 173.080 kb on + strand, within GFF5298at 173.080 kb on + strand, within GFF5298at 173.081 kb on - strand, within GFF5298at 173.081 kb on - strand, within GFF5298at 173.081 kb on - strand, within GFF5298at 173.101 kb on + strand, within GFF5298at 173.102 kb on - strand, within GFF5298at 173.102 kb on - strand, within GFF5298at 173.102 kb on - strand, within GFF5298at 173.102 kb on - strand, within GFF5298at 173.102 kb on - strand, within GFF5298at 173.102 kb on - strand, within GFF5298at 173.329 kb on + strand, within GFF5298at 173.330 kb on - strand, within GFF5298at 173.506 kb on + strand, within GFF5298at 174.078 kb on + strand, within GFF5299at 174.079 kb on - strand, within GFF5299at 174.154 kb on - strand, within GFF5299at 174.264 kb on + strand, within GFF5299at 174.265 kb on - strand, within GFF5299at 174.408 kb on + strand, within GFF5299at 174.409 kb on - strand, within GFF5299at 174.409 kb on - strand, within GFF5299at 174.409 kb on - strand, within GFF5299at 174.624 kb on + strand, within GFF5299at 174.625 kb on - strand, within GFF5299at 174.670 kb on - strand, within GFF5299at 174.670 kb on - strand, within GFF5299

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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170,646 - GFF5296 0.57 +0.2
170,646 - GFF5296 0.57 +0.2
170,646 - GFF5296 0.57 -0.0
170,646 - GFF5296 0.57 -1.0
170,654 + GFF5296 0.57 -2.3
170,655 - GFF5296 0.57 -0.2
170,655 - GFF5296 0.57 +0.4
170,684 + GFF5296 0.60 +0.7
170,685 - GFF5296 0.60 -1.2
170,930 + GFF5296 0.81 +1.7
170,931 - GFF5296 0.81 -0.4
170,931 - GFF5296 0.81 -1.1
170,976 - GFF5296 0.85 -1.7
171,050 + +0.1
171,051 - +0.7
171,051 - -0.4
171,343 + -0.5
171,413 + -0.1
171,414 - -0.3
171,516 + -0.1
171,516 + -2.5
171,516 + +1.7
171,516 + +0.2
171,516 + +0.2
171,516 + -0.1
171,517 - +0.1
171,517 - +0.4
171,517 - -0.5
171,517 - -1.1
171,517 - +0.7
171,517 - +0.2
171,576 - +0.3
171,576 - +0.7
171,736 + +0.2
171,983 - GFF5298 0.21 -0.8
171,994 + GFF5298 0.22 +0.9
171,994 + GFF5298 0.22 -0.2
171,994 + GFF5298 0.22 -0.2
171,994 + GFF5298 0.22 +0.1
171,995 - GFF5298 0.22 +1.3
171,995 - GFF5298 0.22 -0.2
172,072 + GFF5298 0.25 +0.7
172,072 + GFF5298 0.25 +0.2
172,073 - GFF5298 0.25 +0.3
172,073 - GFF5298 0.25 +0.1
172,120 + GFF5298 0.27 +1.6
172,120 + GFF5298 0.27 +0.3
172,121 - GFF5298 0.27 +1.7
172,121 - GFF5298 0.27 -0.6
172,121 - GFF5298 0.27 -0.6
172,121 - GFF5298 0.27 +1.1
172,121 - GFF5298 0.27 +0.1
172,156 + GFF5298 0.29 -0.9
172,156 + GFF5298 0.29 +0.5
172,157 - GFF5298 0.29 +0.2
172,189 + GFF5298 0.30 -1.6
172,273 + GFF5298 0.34 +0.9
172,273 + GFF5298 0.34 -0.6
172,273 + GFF5298 0.34 -0.4
172,273 + GFF5298 0.34 -0.1
172,273 + GFF5298 0.34 -1.3
172,273 + GFF5298 0.34 -0.8
172,274 - GFF5298 0.34 +0.4
172,280 - GFF5298 0.34 +1.5
172,295 - GFF5298 0.35 +0.1
172,295 - GFF5298 0.35 -0.4
172,295 - GFF5298 0.35 -1.1
172,303 + GFF5298 0.35 -0.0
172,303 + GFF5298 0.35 +0.0
172,303 + GFF5298 0.35 -0.7
172,303 + GFF5298 0.35 +1.4
172,303 + GFF5298 0.35 -0.1
172,303 + GFF5298 0.35 +0.1
172,303 + GFF5298 0.35 +0.1
172,304 - GFF5298 0.35 -0.1
172,304 - GFF5298 0.35 -0.6
172,304 - GFF5298 0.35 +0.2
172,304 - GFF5298 0.35 -0.4
172,309 + GFF5298 0.36 +3.6
172,310 - GFF5298 0.36 -0.2
172,318 + GFF5298 0.36 -0.5
172,318 + GFF5298 0.36 +0.2
172,319 - GFF5298 0.36 +0.3
172,319 - GFF5298 0.36 +0.6
172,447 + GFF5298 0.42 +0.3
172,448 - GFF5298 0.42 +0.0
172,501 + GFF5298 0.44 +0.2
172,501 + GFF5298 0.44 -0.1
172,502 - GFF5298 0.44 -0.4
172,502 - GFF5298 0.44 +0.7
172,505 + GFF5298 0.45 -0.2
172,505 + GFF5298 0.45 -0.3
172,505 + GFF5298 0.45 -0.6
172,506 - GFF5298 0.45 +0.5
172,509 + GFF5298 0.45 +0.3
172,510 - GFF5298 0.45 +0.7
172,556 - GFF5298 0.47 +0.1
172,834 + GFF5298 0.59 -0.0
172,835 - GFF5298 0.59 +1.0
172,835 - GFF5298 0.59 -1.1
172,885 + GFF5298 0.62 +0.4
172,886 - GFF5298 0.62 -0.3
172,886 - GFF5298 0.62 +0.5
172,897 + GFF5298 0.62 -0.3
172,991 - GFF5298 0.66 +0.1
173,009 - GFF5298 0.67 +0.1
173,009 - GFF5298 0.67 +0.8
173,009 - GFF5298 0.67 +0.2
173,080 + GFF5298 0.71 -0.2
173,080 + GFF5298 0.71 +0.3
173,081 - GFF5298 0.71 -0.1
173,081 - GFF5298 0.71 -1.3
173,081 - GFF5298 0.71 +0.9
173,101 + GFF5298 0.71 -1.1
173,102 - GFF5298 0.71 +0.6
173,102 - GFF5298 0.71 +0.3
173,102 - GFF5298 0.71 -1.8
173,102 - GFF5298 0.71 -0.2
173,102 - GFF5298 0.71 -0.1
173,102 - GFF5298 0.71 -0.4
173,329 + GFF5298 0.82 +0.4
173,330 - GFF5298 0.82 -1.8
173,506 + GFF5298 0.90 -0.3
174,078 + GFF5299 0.13 -0.6
174,079 - GFF5299 0.13 -2.3
174,154 - GFF5299 0.16 +0.0
174,264 + GFF5299 0.21 -1.0
174,265 - GFF5299 0.22 -1.1
174,408 + GFF5299 0.28 +1.3
174,409 - GFF5299 0.28 +0.1
174,409 - GFF5299 0.28 +0.3
174,409 - GFF5299 0.28 +0.2
174,624 + GFF5299 0.38 -0.3
174,625 - GFF5299 0.38 +0.7
174,670 - GFF5299 0.40 -0.8
174,670 - GFF5299 0.40 -0.6

Or see this region's nucleotide sequence