Strain Fitness in Variovorax sp. SCN45 around GFF5228

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5227 and GFF5228 are separated by 12 nucleotidesGFF5228 and GFF5229 are separated by 176 nucleotides GFF5227 - Putative diheme cytochrome c-553, at 89,551 to 90,837 GFF5227 GFF5228 - Arachidonate 15-lipoxygenase precursor (EC 1.13.11.33), at 90,850 to 92,859 GFF5228 GFF5229 - Guanine deaminase (EC 3.5.4.3); Hydroxydechloroatrazine ethylaminohydrolase (EC 3.5.99.3), at 93,036 to 94,478 GFF5229 Position (kb) 90 91 92 93Strain fitness (log2 ratio) -1 0 1 2at 89.980 kb on + strand, within GFF5227at 89.981 kb on - strand, within GFF5227at 89.981 kb on - strand, within GFF5227at 89.981 kb on - strand, within GFF5227at 89.986 kb on + strand, within GFF5227at 89.986 kb on + strand, within GFF5227at 89.987 kb on - strand, within GFF5227at 90.148 kb on + strand, within GFF5227at 90.148 kb on + strand, within GFF5227at 90.262 kb on + strand, within GFF5227at 90.263 kb on - strand, within GFF5227at 90.407 kb on - strand, within GFF5227at 90.442 kb on + strand, within GFF5227at 90.545 kb on - strand, within GFF5227at 90.545 kb on - strand, within GFF5227at 90.772 kb on + strandat 90.772 kb on + strandat 90.772 kb on + strandat 91.040 kb on + strandat 91.041 kb on - strandat 91.041 kb on - strandat 91.061 kb on + strand, within GFF5228at 91.062 kb on - strand, within GFF5228at 91.062 kb on - strand, within GFF5228at 91.062 kb on - strand, within GFF5228at 91.205 kb on + strand, within GFF5228at 91.205 kb on + strand, within GFF5228at 91.205 kb on + strand, within GFF5228at 91.205 kb on + strand, within GFF5228at 91.205 kb on + strand, within GFF5228at 91.205 kb on + strand, within GFF5228at 91.205 kb on + strand, within GFF5228at 91.205 kb on + strand, within GFF5228at 91.205 kb on + strand, within GFF5228at 91.205 kb on + strand, within GFF5228at 91.205 kb on + strand, within GFF5228at 91.205 kb on + strand, within GFF5228at 91.205 kb on + strand, within GFF5228at 91.205 kb on + strand, within GFF5228at 91.206 kb on - strand, within GFF5228at 91.206 kb on - strand, within GFF5228at 91.206 kb on - strand, within GFF5228at 91.206 kb on - strand, within GFF5228at 91.206 kb on - strand, within GFF5228at 91.206 kb on - strand, within GFF5228at 91.206 kb on - strand, within GFF5228at 91.206 kb on - strand, within GFF5228at 91.206 kb on - strand, within GFF5228at 91.206 kb on - strand, within GFF5228at 91.206 kb on - strand, within GFF5228at 91.206 kb on - strand, within GFF5228at 91.206 kb on - strand, within GFF5228at 91.221 kb on - strand, within GFF5228at 91.400 kb on + strand, within GFF5228at 91.400 kb on + strand, within GFF5228at 91.401 kb on - strand, within GFF5228at 91.401 kb on - strand, within GFF5228at 91.404 kb on - strand, within GFF5228at 91.404 kb on - strand, within GFF5228at 91.404 kb on - strand, within GFF5228at 91.415 kb on + strand, within GFF5228at 91.476 kb on - strand, within GFF5228at 91.545 kb on - strand, within GFF5228at 91.800 kb on - strand, within GFF5228at 91.800 kb on - strand, within GFF5228at 91.851 kb on - strand, within GFF5228at 91.982 kb on + strand, within GFF5228at 91.982 kb on + strand, within GFF5228at 91.982 kb on + strand, within GFF5228at 91.982 kb on + strand, within GFF5228at 91.982 kb on + strand, within GFF5228at 91.988 kb on + strand, within GFF5228at 91.988 kb on + strand, within GFF5228at 91.989 kb on - strand, within GFF5228at 91.989 kb on - strand, within GFF5228at 91.989 kb on - strand, within GFF5228at 91.989 kb on - strand, within GFF5228at 92.051 kb on + strand, within GFF5228at 92.063 kb on + strand, within GFF5228at 92.124 kb on - strand, within GFF5228at 92.173 kb on + strand, within GFF5228at 92.208 kb on - strand, within GFF5228at 92.254 kb on - strand, within GFF5228at 92.681 kb on + strandat 92.681 kb on + strandat 92.681 kb on + strandat 92.681 kb on + strandat 92.681 kb on + strandat 92.682 kb on - strandat 92.934 kb on + strandat 93.067 kb on + strandat 93.068 kb on - strandat 93.068 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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89,980 + GFF5227 0.33 -1.6
89,981 - GFF5227 0.33 -0.6
89,981 - GFF5227 0.33 -1.4
89,981 - GFF5227 0.33 +0.1
89,986 + GFF5227 0.34 +0.3
89,986 + GFF5227 0.34 -0.4
89,987 - GFF5227 0.34 -0.8
90,148 + GFF5227 0.46 +0.6
90,148 + GFF5227 0.46 -0.1
90,262 + GFF5227 0.55 -1.3
90,263 - GFF5227 0.55 +0.1
90,407 - GFF5227 0.67 +0.4
90,442 + GFF5227 0.69 +0.0
90,545 - GFF5227 0.77 -1.1
90,545 - GFF5227 0.77 +0.9
90,772 + -0.7
90,772 + -0.1
90,772 + -1.3
91,040 + +0.6
91,041 - +1.0
91,041 - -0.7
91,061 + GFF5228 0.10 +0.0
91,062 - GFF5228 0.11 -0.1
91,062 - GFF5228 0.11 +0.2
91,062 - GFF5228 0.11 -0.6
91,205 + GFF5228 0.18 +0.0
91,205 + GFF5228 0.18 -0.5
91,205 + GFF5228 0.18 -0.0
91,205 + GFF5228 0.18 +1.7
91,205 + GFF5228 0.18 +0.2
91,205 + GFF5228 0.18 -1.3
91,205 + GFF5228 0.18 -0.1
91,205 + GFF5228 0.18 +0.5
91,205 + GFF5228 0.18 +2.7
91,205 + GFF5228 0.18 -0.6
91,205 + GFF5228 0.18 -0.2
91,205 + GFF5228 0.18 -1.1
91,205 + GFF5228 0.18 -0.8
91,205 + GFF5228 0.18 -0.3
91,206 - GFF5228 0.18 -0.2
91,206 - GFF5228 0.18 -0.1
91,206 - GFF5228 0.18 +0.8
91,206 - GFF5228 0.18 +0.1
91,206 - GFF5228 0.18 -1.7
91,206 - GFF5228 0.18 +0.0
91,206 - GFF5228 0.18 -0.5
91,206 - GFF5228 0.18 +0.2
91,206 - GFF5228 0.18 +1.0
91,206 - GFF5228 0.18 -0.1
91,206 - GFF5228 0.18 +1.7
91,206 - GFF5228 0.18 +0.1
91,206 - GFF5228 0.18 -0.6
91,221 - GFF5228 0.18 -0.8
91,400 + GFF5228 0.27 +0.5
91,400 + GFF5228 0.27 -0.3
91,401 - GFF5228 0.27 -0.3
91,401 - GFF5228 0.27 +0.4
91,404 - GFF5228 0.28 -0.2
91,404 - GFF5228 0.28 +1.2
91,404 - GFF5228 0.28 +0.1
91,415 + GFF5228 0.28 +0.9
91,476 - GFF5228 0.31 -0.1
91,545 - GFF5228 0.35 -0.1
91,800 - GFF5228 0.47 -0.2
91,800 - GFF5228 0.47 -0.4
91,851 - GFF5228 0.50 -1.0
91,982 + GFF5228 0.56 -0.1
91,982 + GFF5228 0.56 -0.6
91,982 + GFF5228 0.56 -0.3
91,982 + GFF5228 0.56 +1.1
91,982 + GFF5228 0.56 +0.3
91,988 + GFF5228 0.57 -0.1
91,988 + GFF5228 0.57 +0.7
91,989 - GFF5228 0.57 -0.7
91,989 - GFF5228 0.57 +0.7
91,989 - GFF5228 0.57 -0.4
91,989 - GFF5228 0.57 -0.0
92,051 + GFF5228 0.60 +0.1
92,063 + GFF5228 0.60 +0.2
92,124 - GFF5228 0.63 -0.8
92,173 + GFF5228 0.66 -0.3
92,208 - GFF5228 0.68 +0.0
92,254 - GFF5228 0.70 -0.2
92,681 + -0.5
92,681 + -0.1
92,681 + +0.1
92,681 + -0.2
92,681 + +0.5
92,682 - -0.1
92,934 + +0.2
93,067 + -1.6
93,068 - -0.5
93,068 - -0.2

Or see this region's nucleotide sequence