Strain Fitness in Variovorax sp. SCN45 around GFF5118

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5117 and GFF5118 are separated by 28 nucleotidesGFF5118 and GFF5119 are separated by 175 nucleotides GFF5117 - Transcriptional regulator, LysR family, at 218,862 to 219,746 GFF5117 GFF5118 - gluconolactonase family protein, at 219,775 to 220,707 GFF5118 GFF5119 - Ammonium transporter, at 220,883 to 222,322 GFF5119 Position (kb) 219 220 221Strain fitness (log2 ratio) -2 -1 0 1 2at 218.779 kb on + strandat 218.779 kb on + strandat 218.779 kb on + strandat 218.779 kb on + strandat 218.779 kb on + strandat 218.780 kb on - strandat 218.780 kb on - strandat 218.780 kb on - strandat 218.780 kb on - strandat 218.789 kb on + strandat 218.789 kb on + strandat 218.789 kb on + strandat 218.789 kb on + strandat 218.790 kb on - strandat 218.790 kb on - strandat 218.790 kb on - strandat 218.941 kb on + strandat 218.941 kb on + strandat 218.941 kb on + strandat 218.941 kb on + strandat 218.942 kb on - strandat 218.942 kb on - strandat 218.942 kb on - strandat 218.942 kb on - strandat 218.942 kb on - strandat 218.942 kb on - strandat 218.942 kb on - strandat 218.942 kb on - strandat 218.942 kb on - strandat 218.942 kb on - strandat 218.942 kb on - strandat 218.942 kb on - strandat 218.942 kb on - strandat 218.942 kb on - strandat 219.064 kb on + strand, within GFF5117at 219.064 kb on + strand, within GFF5117at 219.064 kb on + strand, within GFF5117at 219.064 kb on + strand, within GFF5117at 219.064 kb on + strand, within GFF5117at 219.065 kb on - strand, within GFF5117at 219.065 kb on - strand, within GFF5117at 219.065 kb on - strand, within GFF5117at 219.065 kb on - strand, within GFF5117at 219.065 kb on - strand, within GFF5117at 219.232 kb on + strand, within GFF5117at 219.232 kb on + strand, within GFF5117at 219.232 kb on + strand, within GFF5117at 219.232 kb on + strand, within GFF5117at 219.233 kb on - strand, within GFF5117at 219.233 kb on - strand, within GFF5117at 219.233 kb on - strand, within GFF5117at 219.233 kb on - strand, within GFF5117at 219.233 kb on - strand, within GFF5117at 219.233 kb on - strand, within GFF5117at 219.392 kb on - strand, within GFF5117at 219.392 kb on - strand, within GFF5117at 219.392 kb on - strand, within GFF5117at 219.392 kb on - strand, within GFF5117at 219.392 kb on - strand, within GFF5117at 219.392 kb on - strand, within GFF5117at 219.392 kb on - strand, within GFF5117at 219.544 kb on + strand, within GFF5117at 220.028 kb on + strand, within GFF5118at 220.074 kb on - strand, within GFF5118at 220.209 kb on - strand, within GFF5118at 220.209 kb on - strand, within GFF5118at 220.319 kb on + strand, within GFF5118at 220.319 kb on + strand, within GFF5118at 220.320 kb on - strand, within GFF5118at 220.476 kb on - strand, within GFF5118at 220.476 kb on - strand, within GFF5118at 220.476 kb on - strand, within GFF5118at 220.632 kb on - strandat 220.632 kb on - strandat 220.885 kb on - strandat 220.885 kb on - strandat 220.885 kb on - strandat 220.893 kb on + strandat 220.893 kb on + strandat 220.893 kb on + strandat 220.894 kb on - strandat 220.894 kb on - strandat 220.894 kb on - strandat 220.894 kb on - strandat 220.894 kb on - strandat 220.894 kb on - strandat 220.894 kb on - strandat 220.984 kb on - strandat 221.571 kb on + strand, within GFF5119at 221.571 kb on + strand, within GFF5119at 221.571 kb on + strand, within GFF5119at 221.571 kb on + strand, within GFF5119at 221.571 kb on + strand, within GFF5119at 221.571 kb on + strand, within GFF5119at 221.571 kb on + strand, within GFF5119at 221.571 kb on + strand, within GFF5119at 221.571 kb on + strand, within GFF5119at 221.571 kb on + strand, within GFF5119at 221.571 kb on + strand, within GFF5119at 221.571 kb on + strand, within GFF5119at 221.571 kb on + strand, within GFF5119at 221.572 kb on - strand, within GFF5119at 221.572 kb on - strand, within GFF5119at 221.572 kb on - strand, within GFF5119at 221.572 kb on - strand, within GFF5119at 221.572 kb on - strand, within GFF5119at 221.572 kb on - strand, within GFF5119at 221.572 kb on - strand, within GFF5119at 221.572 kb on - strand, within GFF5119at 221.572 kb on - strand, within GFF5119at 221.572 kb on - strand, within GFF5119at 221.572 kb on - strand, within GFF5119at 221.691 kb on + strand, within GFF5119at 221.691 kb on + strand, within GFF5119at 221.691 kb on + strand, within GFF5119at 221.691 kb on + strand, within GFF5119at 221.691 kb on + strand, within GFF5119at 221.691 kb on + strand, within GFF5119at 221.691 kb on + strand, within GFF5119at 221.691 kb on + strand, within GFF5119at 221.692 kb on - strand, within GFF5119at 221.692 kb on - strand, within GFF5119at 221.692 kb on - strand, within GFF5119at 221.692 kb on - strand, within GFF5119at 221.692 kb on - strand, within GFF5119at 221.692 kb on - strand, within GFF5119at 221.692 kb on - strand, within GFF5119at 221.692 kb on - strand, within GFF5119at 221.692 kb on - strand, within GFF5119at 221.692 kb on - strand, within GFF5119

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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218,779 + +0.2
218,779 + +0.2
218,779 + -0.9
218,779 + -0.1
218,779 + -0.0
218,780 - -0.2
218,780 - +1.8
218,780 - +0.2
218,780 - +0.2
218,789 + -0.8
218,789 + -1.4
218,789 + +0.0
218,789 + -0.7
218,790 - -0.4
218,790 - +0.2
218,790 - -0.2
218,941 + -0.5
218,941 + -0.1
218,941 + -0.9
218,941 + +0.9
218,942 - -1.0
218,942 - +0.1
218,942 - -2.5
218,942 - +0.8
218,942 - +0.1
218,942 - -0.1
218,942 - -0.1
218,942 - +0.0
218,942 - -0.8
218,942 - +0.1
218,942 - -0.8
218,942 - -0.1
218,942 - -1.6
218,942 - -1.6
219,064 + GFF5117 0.23 -0.5
219,064 + GFF5117 0.23 +1.8
219,064 + GFF5117 0.23 +0.8
219,064 + GFF5117 0.23 -0.1
219,064 + GFF5117 0.23 -0.1
219,065 - GFF5117 0.23 -1.2
219,065 - GFF5117 0.23 -0.9
219,065 - GFF5117 0.23 +0.1
219,065 - GFF5117 0.23 -0.3
219,065 - GFF5117 0.23 -1.0
219,232 + GFF5117 0.42 +0.7
219,232 + GFF5117 0.42 -0.6
219,232 + GFF5117 0.42 +0.2
219,232 + GFF5117 0.42 -0.1
219,233 - GFF5117 0.42 -0.0
219,233 - GFF5117 0.42 +0.4
219,233 - GFF5117 0.42 -0.1
219,233 - GFF5117 0.42 +0.1
219,233 - GFF5117 0.42 -0.0
219,233 - GFF5117 0.42 -0.8
219,392 - GFF5117 0.60 -0.1
219,392 - GFF5117 0.60 -0.7
219,392 - GFF5117 0.60 +0.1
219,392 - GFF5117 0.60 +0.7
219,392 - GFF5117 0.60 +1.8
219,392 - GFF5117 0.60 +0.7
219,392 - GFF5117 0.60 -1.2
219,544 + GFF5117 0.77 -0.4
220,028 + GFF5118 0.27 -1.1
220,074 - GFF5118 0.32 +0.2
220,209 - GFF5118 0.47 -1.0
220,209 - GFF5118 0.47 -0.3
220,319 + GFF5118 0.58 -0.5
220,319 + GFF5118 0.58 -1.2
220,320 - GFF5118 0.58 -1.8
220,476 - GFF5118 0.75 -0.5
220,476 - GFF5118 0.75 -1.4
220,476 - GFF5118 0.75 -0.6
220,632 - -1.2
220,632 - -0.8
220,885 - -0.0
220,885 - -0.5
220,885 - +0.1
220,893 + +0.7
220,893 + -1.2
220,893 + +0.7
220,894 - +0.2
220,894 - -0.0
220,894 - +0.2
220,894 - +0.4
220,894 - -0.3
220,894 - +0.3
220,894 - -0.6
220,984 - +0.3
221,571 + GFF5119 0.48 -0.2
221,571 + GFF5119 0.48 -1.5
221,571 + GFF5119 0.48 +1.3
221,571 + GFF5119 0.48 +0.5
221,571 + GFF5119 0.48 +1.1
221,571 + GFF5119 0.48 -0.6
221,571 + GFF5119 0.48 +0.2
221,571 + GFF5119 0.48 +0.1
221,571 + GFF5119 0.48 -1.0
221,571 + GFF5119 0.48 -0.2
221,571 + GFF5119 0.48 -0.5
221,571 + GFF5119 0.48 +1.5
221,571 + GFF5119 0.48 +0.4
221,572 - GFF5119 0.48 +0.1
221,572 - GFF5119 0.48 +1.0
221,572 - GFF5119 0.48 -0.1
221,572 - GFF5119 0.48 +0.0
221,572 - GFF5119 0.48 +0.2
221,572 - GFF5119 0.48 -0.6
221,572 - GFF5119 0.48 -0.1
221,572 - GFF5119 0.48 -0.6
221,572 - GFF5119 0.48 +0.1
221,572 - GFF5119 0.48 -0.0
221,572 - GFF5119 0.48 -0.5
221,691 + GFF5119 0.56 -1.2
221,691 + GFF5119 0.56 -0.7
221,691 + GFF5119 0.56 -1.2
221,691 + GFF5119 0.56 -0.5
221,691 + GFF5119 0.56 +0.2
221,691 + GFF5119 0.56 -0.8
221,691 + GFF5119 0.56 +0.6
221,691 + GFF5119 0.56 +0.0
221,692 - GFF5119 0.56 +0.2
221,692 - GFF5119 0.56 -0.9
221,692 - GFF5119 0.56 +1.8
221,692 - GFF5119 0.56 -0.2
221,692 - GFF5119 0.56 -0.4
221,692 - GFF5119 0.56 -0.9
221,692 - GFF5119 0.56 +0.1
221,692 - GFF5119 0.56 -0.3
221,692 - GFF5119 0.56 +1.2
221,692 - GFF5119 0.56 -1.2

Or see this region's nucleotide sequence