Strain Fitness in Variovorax sp. SCN45 around GFF5083

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5082 and GFF5083 are separated by 192 nucleotidesGFF5083 and GFF5084 are separated by 7 nucleotidesGFF5084 and GFF5085 are separated by 184 nucleotides GFF5082 - Uncharacterized MFS-type transporter, at 185,380 to 186,693 GFF5082 GFF5083 - Transcriptional regulator, LysR family, at 186,886 to 187,833 GFF5083 GFF5084 - FIG00933367: hypothetical protein, at 187,841 to 188,278 GFF5084 GFF5085 - hypothetical protein, at 188,463 to 188,918 GFF5085 Position (kb) 186 187 188Strain fitness (log2 ratio) -2 -1 0 1 2at 185.897 kb on + strand, within GFF5082at 185.898 kb on - strand, within GFF5082at 185.898 kb on - strand, within GFF5082at 185.898 kb on - strand, within GFF5082at 185.898 kb on - strand, within GFF5082at 185.898 kb on - strand, within GFF5082at 185.898 kb on - strand, within GFF5082at 186.028 kb on + strand, within GFF5082at 186.028 kb on + strand, within GFF5082at 186.028 kb on + strand, within GFF5082at 186.028 kb on + strand, within GFF5082at 186.028 kb on + strand, within GFF5082at 186.028 kb on + strand, within GFF5082at 186.028 kb on + strand, within GFF5082at 186.028 kb on + strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.029 kb on - strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.032 kb on + strand, within GFF5082at 186.033 kb on - strand, within GFF5082at 186.033 kb on - strand, within GFF5082at 186.033 kb on - strand, within GFF5082at 186.033 kb on - strand, within GFF5082at 186.033 kb on - strand, within GFF5082at 186.033 kb on - strand, within GFF5082at 186.033 kb on - strand, within GFF5082at 186.120 kb on - strand, within GFF5082at 186.324 kb on - strand, within GFF5082at 186.324 kb on - strand, within GFF5082at 186.324 kb on - strand, within GFF5082at 186.324 kb on - strand, within GFF5082at 186.413 kb on + strand, within GFF5082at 186.413 kb on + strand, within GFF5082at 186.548 kb on + strand, within GFF5082at 186.548 kb on + strand, within GFF5082at 186.549 kb on - strand, within GFF5082at 186.549 kb on - strand, within GFF5082at 186.549 kb on - strand, within GFF5082at 186.563 kb on + strandat 186.563 kb on + strandat 186.563 kb on + strandat 186.563 kb on + strandat 186.563 kb on + strandat 186.563 kb on + strandat 186.563 kb on + strandat 186.563 kb on + strandat 186.563 kb on + strandat 186.564 kb on - strandat 186.564 kb on - strandat 186.564 kb on - strandat 186.564 kb on - strandat 186.564 kb on - strandat 186.564 kb on - strandat 186.564 kb on - strandat 186.695 kb on + strandat 186.695 kb on + strandat 186.695 kb on + strandat 186.695 kb on + strandat 186.695 kb on + strandat 186.695 kb on + strandat 186.695 kb on + strandat 186.695 kb on + strandat 186.695 kb on + strandat 186.695 kb on + strandat 186.696 kb on - strandat 186.696 kb on - strandat 186.696 kb on - strandat 186.696 kb on - strandat 186.696 kb on - strandat 186.696 kb on - strandat 186.696 kb on - strandat 186.696 kb on - strandat 186.751 kb on + strandat 186.751 kb on + strandat 186.751 kb on + strandat 186.751 kb on + strandat 186.752 kb on - strandat 186.752 kb on - strandat 187.830 kb on + strandat 187.831 kb on + strandat 187.831 kb on + strandat 187.831 kb on + strandat 187.831 kb on + strandat 187.831 kb on + strandat 187.832 kb on - strandat 187.832 kb on - strandat 187.832 kb on - strandat 187.832 kb on - strandat 187.832 kb on - strandat 187.832 kb on - strandat 187.832 kb on - strandat 187.832 kb on - strandat 187.832 kb on - strandat 187.941 kb on + strand, within GFF5084at 187.942 kb on - strand, within GFF5084at 187.942 kb on - strand, within GFF5084at 187.942 kb on - strand, within GFF5084at 187.942 kb on - strand, within GFF5084at 187.968 kb on + strand, within GFF5084at 187.968 kb on + strand, within GFF5084at 187.969 kb on - strand, within GFF5084at 187.969 kb on - strand, within GFF5084at 188.091 kb on + strand, within GFF5084at 188.091 kb on + strand, within GFF5084at 188.092 kb on - strand, within GFF5084at 188.092 kb on - strand, within GFF5084at 188.092 kb on - strand, within GFF5084at 188.343 kb on + strandat 188.378 kb on + strandat 188.378 kb on + strandat 188.462 kb on + strandat 188.462 kb on + strandat 188.462 kb on + strandat 188.462 kb on + strandat 188.462 kb on + strandat 188.463 kb on - strandat 188.541 kb on + strand, within GFF5085at 188.541 kb on + strand, within GFF5085at 188.541 kb on + strand, within GFF5085at 188.541 kb on + strand, within GFF5085at 188.541 kb on + strand, within GFF5085at 188.542 kb on - strand, within GFF5085at 188.542 kb on - strand, within GFF5085at 188.592 kb on + strand, within GFF5085at 188.592 kb on + strand, within GFF5085at 188.592 kb on + strand, within GFF5085at 188.592 kb on + strand, within GFF5085at 188.592 kb on + strand, within GFF5085at 188.592 kb on + strand, within GFF5085at 188.592 kb on + strand, within GFF5085at 188.592 kb on + strand, within GFF5085at 188.592 kb on + strand, within GFF5085at 188.592 kb on + strand, within GFF5085at 188.592 kb on + strand, within GFF5085at 188.593 kb on - strand, within GFF5085at 188.593 kb on - strand, within GFF5085at 188.593 kb on - strand, within GFF5085at 188.593 kb on - strand, within GFF5085at 188.593 kb on - strand, within GFF5085at 188.593 kb on - strand, within GFF5085at 188.640 kb on + strand, within GFF5085at 188.641 kb on - strand, within GFF5085at 188.667 kb on + strand, within GFF5085

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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185,897 + GFF5082 0.39 -0.0
185,898 - GFF5082 0.39 -0.3
185,898 - GFF5082 0.39 -0.2
185,898 - GFF5082 0.39 -0.3
185,898 - GFF5082 0.39 +0.9
185,898 - GFF5082 0.39 -0.3
185,898 - GFF5082 0.39 +1.8
186,028 + GFF5082 0.49 -2.1
186,028 + GFF5082 0.49 +0.1
186,028 + GFF5082 0.49 -0.4
186,028 + GFF5082 0.49 -0.0
186,028 + GFF5082 0.49 +0.7
186,028 + GFF5082 0.49 -0.6
186,028 + GFF5082 0.49 -1.0
186,028 + GFF5082 0.49 -0.3
186,029 - GFF5082 0.49 +0.1
186,029 - GFF5082 0.49 +0.8
186,029 - GFF5082 0.49 -1.0
186,029 - GFF5082 0.49 -0.5
186,029 - GFF5082 0.49 -0.3
186,029 - GFF5082 0.49 +1.3
186,029 - GFF5082 0.49 -0.6
186,029 - GFF5082 0.49 -0.2
186,029 - GFF5082 0.49 -0.8
186,029 - GFF5082 0.49 +0.1
186,029 - GFF5082 0.49 +0.0
186,029 - GFF5082 0.49 -0.3
186,029 - GFF5082 0.49 -0.2
186,029 - GFF5082 0.49 +0.4
186,029 - GFF5082 0.49 +0.8
186,032 + GFF5082 0.50 +0.8
186,032 + GFF5082 0.50 -0.0
186,032 + GFF5082 0.50 -0.4
186,032 + GFF5082 0.50 -0.4
186,032 + GFF5082 0.50 +0.1
186,032 + GFF5082 0.50 -1.1
186,032 + GFF5082 0.50 +0.3
186,032 + GFF5082 0.50 +0.4
186,032 + GFF5082 0.50 -0.4
186,032 + GFF5082 0.50 -0.4
186,032 + GFF5082 0.50 -0.4
186,032 + GFF5082 0.50 +0.4
186,032 + GFF5082 0.50 -1.3
186,033 - GFF5082 0.50 -0.5
186,033 - GFF5082 0.50 +0.3
186,033 - GFF5082 0.50 +1.8
186,033 - GFF5082 0.50 -2.0
186,033 - GFF5082 0.50 -0.2
186,033 - GFF5082 0.50 +0.2
186,033 - GFF5082 0.50 -0.2
186,120 - GFF5082 0.56 +0.8
186,324 - GFF5082 0.72 -0.4
186,324 - GFF5082 0.72 -0.8
186,324 - GFF5082 0.72 -1.3
186,324 - GFF5082 0.72 +0.0
186,413 + GFF5082 0.79 +0.8
186,413 + GFF5082 0.79 +0.3
186,548 + GFF5082 0.89 -0.5
186,548 + GFF5082 0.89 -1.1
186,549 - GFF5082 0.89 -1.2
186,549 - GFF5082 0.89 +0.8
186,549 - GFF5082 0.89 +0.5
186,563 + +0.4
186,563 + -0.1
186,563 + -0.1
186,563 + -0.8
186,563 + -0.6
186,563 + -1.0
186,563 + -0.1
186,563 + -0.5
186,563 + +0.8
186,564 - +0.2
186,564 - -0.5
186,564 - +0.8
186,564 - -0.4
186,564 - -0.4
186,564 - +0.4
186,564 - -0.6
186,695 + -0.2
186,695 + +1.0
186,695 + -0.6
186,695 + +0.1
186,695 + +0.6
186,695 + -0.2
186,695 + -0.5
186,695 + -0.2
186,695 + +0.4
186,695 + +1.2
186,696 - -2.0
186,696 - +0.2
186,696 - -1.8
186,696 - -0.2
186,696 - -0.8
186,696 - -0.3
186,696 - +0.2
186,696 - -2.4
186,751 + -0.8
186,751 + +0.1
186,751 + -0.4
186,751 + +0.5
186,752 - +1.8
186,752 - +1.4
187,830 + -0.2
187,831 + -0.5
187,831 + -0.9
187,831 + -1.2
187,831 + -0.8
187,831 + -2.3
187,832 - -0.6
187,832 - -0.2
187,832 - -0.7
187,832 - -0.7
187,832 - -0.7
187,832 - +0.3
187,832 - +0.1
187,832 - -0.4
187,832 - +0.2
187,941 + GFF5084 0.23 -0.3
187,942 - GFF5084 0.23 -0.0
187,942 - GFF5084 0.23 -0.2
187,942 - GFF5084 0.23 -0.6
187,942 - GFF5084 0.23 -0.5
187,968 + GFF5084 0.29 -0.4
187,968 + GFF5084 0.29 -0.1
187,969 - GFF5084 0.29 -0.7
187,969 - GFF5084 0.29 -0.5
188,091 + GFF5084 0.57 -1.8
188,091 + GFF5084 0.57 -0.3
188,092 - GFF5084 0.57 -0.9
188,092 - GFF5084 0.57 +0.2
188,092 - GFF5084 0.57 -0.8
188,343 + +1.6
188,378 + -0.0
188,378 + +0.6
188,462 + +1.8
188,462 + +0.2
188,462 + -0.6
188,462 + +1.5
188,462 + +0.5
188,463 - -0.0
188,541 + GFF5085 0.17 -0.9
188,541 + GFF5085 0.17 +0.8
188,541 + GFF5085 0.17 +0.4
188,541 + GFF5085 0.17 -0.7
188,541 + GFF5085 0.17 -0.4
188,542 - GFF5085 0.17 -1.3
188,542 - GFF5085 0.17 +0.4
188,592 + GFF5085 0.28 -1.0
188,592 + GFF5085 0.28 +0.2
188,592 + GFF5085 0.28 -0.3
188,592 + GFF5085 0.28 -0.2
188,592 + GFF5085 0.28 -0.2
188,592 + GFF5085 0.28 +0.4
188,592 + GFF5085 0.28 -1.1
188,592 + GFF5085 0.28 -0.3
188,592 + GFF5085 0.28 -0.3
188,592 + GFF5085 0.28 -0.1
188,592 + GFF5085 0.28 -1.6
188,593 - GFF5085 0.29 -0.8
188,593 - GFF5085 0.29 -0.6
188,593 - GFF5085 0.29 +0.7
188,593 - GFF5085 0.29 +0.5
188,593 - GFF5085 0.29 -1.3
188,593 - GFF5085 0.29 +0.8
188,640 + GFF5085 0.39 -0.3
188,641 - GFF5085 0.39 -0.3
188,667 + GFF5085 0.45 -0.2

Or see this region's nucleotide sequence