Strain Fitness in Variovorax sp. SCN45 around GFF5075

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5073 and GFF5074 are separated by 162 nucleotidesGFF5074 and GFF5075 are separated by 10 nucleotidesGFF5075 and GFF5076 are separated by 104 nucleotides GFF5073 - 3-oxoacyl-[ACP] synthase, at 175,851 to 176,690 GFF5073 GFF5074 - Two-component transcriptional response regulator Dtpsy_0213, OmpR family, at 176,853 to 177,575 GFF5074 GFF5075 - Two-component system sensor histidine kinase Dtpsy_0212, at 177,586 to 178,782 GFF5075 GFF5076 - hypothetical protein, at 178,887 to 180,101 GFF5076 Position (kb) 177 178 179Strain fitness (log2 ratio) -2 -1 0 1 2at 176.761 kb on - strandat 176.804 kb on + strandat 176.805 kb on - strandat 176.815 kb on - strandat 176.925 kb on + strandat 176.925 kb on + strandat 176.925 kb on + strandat 176.925 kb on + strandat 176.925 kb on + strandat 176.926 kb on - strand, within GFF5074at 176.926 kb on - strand, within GFF5074at 177.097 kb on + strand, within GFF5074at 177.097 kb on + strand, within GFF5074at 177.097 kb on + strand, within GFF5074at 177.097 kb on + strand, within GFF5074at 177.097 kb on + strand, within GFF5074at 177.098 kb on - strand, within GFF5074at 177.172 kb on - strand, within GFF5074at 177.172 kb on - strand, within GFF5074at 177.351 kb on + strand, within GFF5074at 177.351 kb on + strand, within GFF5074at 177.351 kb on + strand, within GFF5074at 177.352 kb on - strand, within GFF5074at 177.352 kb on - strand, within GFF5074at 177.352 kb on - strand, within GFF5074at 177.549 kb on + strandat 177.549 kb on + strandat 177.549 kb on + strandat 177.549 kb on + strandat 177.550 kb on - strandat 177.550 kb on - strandat 177.550 kb on - strandat 177.550 kb on - strandat 177.602 kb on - strandat 177.602 kb on - strandat 177.602 kb on - strandat 177.616 kb on + strandat 177.616 kb on + strandat 177.616 kb on + strandat 177.616 kb on + strandat 177.616 kb on + strandat 177.616 kb on + strandat 177.616 kb on + strandat 177.617 kb on - strandat 177.617 kb on - strandat 177.617 kb on - strandat 177.617 kb on - strandat 177.617 kb on - strandat 177.617 kb on - strandat 177.964 kb on + strand, within GFF5075at 178.839 kb on + strandat 178.839 kb on + strandat 178.840 kb on - strandat 178.840 kb on - strandat 178.854 kb on - strandat 178.854 kb on - strandat 178.854 kb on - strandat 178.930 kb on - strandat 178.930 kb on - strandat 178.930 kb on - strandat 178.930 kb on - strandat 178.930 kb on - strandat 178.930 kb on - strandat 178.989 kb on + strandat 178.989 kb on + strandat 178.989 kb on + strandat 179.034 kb on + strand, within GFF5076at 179.110 kb on + strand, within GFF5076at 179.110 kb on + strand, within GFF5076at 179.110 kb on + strand, within GFF5076at 179.110 kb on + strand, within GFF5076at 179.110 kb on + strand, within GFF5076at 179.110 kb on + strand, within GFF5076at 179.110 kb on + strand, within GFF5076at 179.111 kb on - strand, within GFF5076at 179.111 kb on - strand, within GFF5076at 179.111 kb on - strand, within GFF5076at 179.111 kb on - strand, within GFF5076at 179.111 kb on - strand, within GFF5076at 179.111 kb on - strand, within GFF5076at 179.226 kb on + strand, within GFF5076at 179.227 kb on - strand, within GFF5076at 179.246 kb on + strand, within GFF5076at 179.246 kb on + strand, within GFF5076at 179.246 kb on + strand, within GFF5076at 179.246 kb on + strand, within GFF5076at 179.246 kb on + strand, within GFF5076at 179.246 kb on + strand, within GFF5076at 179.246 kb on + strand, within GFF5076at 179.247 kb on - strand, within GFF5076at 179.568 kb on + strand, within GFF5076at 179.568 kb on + strand, within GFF5076at 179.568 kb on + strand, within GFF5076at 179.569 kb on - strand, within GFF5076at 179.617 kb on + strand, within GFF5076at 179.617 kb on + strand, within GFF5076at 179.618 kb on - strand, within GFF5076at 179.667 kb on + strand, within GFF5076at 179.667 kb on + strand, within GFF5076at 179.667 kb on + strand, within GFF5076at 179.667 kb on + strand, within GFF5076at 179.668 kb on - strand, within GFF5076at 179.668 kb on - strand, within GFF5076at 179.670 kb on + strand, within GFF5076at 179.670 kb on + strand, within GFF5076at 179.670 kb on + strand, within GFF5076at 179.670 kb on + strand, within GFF5076at 179.670 kb on + strand, within GFF5076at 179.670 kb on + strand, within GFF5076at 179.670 kb on + strand, within GFF5076at 179.670 kb on + strand, within GFF5076at 179.670 kb on + strand, within GFF5076at 179.670 kb on + strand, within GFF5076at 179.670 kb on + strand, within GFF5076at 179.670 kb on + strand, within GFF5076at 179.670 kb on + strand, within GFF5076at 179.670 kb on + strand, within GFF5076at 179.670 kb on + strand, within GFF5076at 179.670 kb on + strand, within GFF5076at 179.670 kb on + strand, within GFF5076at 179.670 kb on - strand, within GFF5076at 179.671 kb on - strand, within GFF5076at 179.671 kb on - strand, within GFF5076at 179.671 kb on - strand, within GFF5076at 179.671 kb on - strand, within GFF5076at 179.671 kb on - strand, within GFF5076at 179.671 kb on - strand, within GFF5076at 179.671 kb on - strand, within GFF5076at 179.671 kb on - strand, within GFF5076at 179.671 kb on - strand, within GFF5076at 179.671 kb on - strand, within GFF5076at 179.671 kb on - strand, within GFF5076at 179.671 kb on - strand, within GFF5076at 179.671 kb on - strand, within GFF5076at 179.671 kb on - strand, within GFF5076at 179.671 kb on - strand, within GFF5076at 179.671 kb on - strand, within GFF5076at 179.671 kb on - strand, within GFF5076at 179.671 kb on - strand, within GFF5076at 179.671 kb on - strand, within GFF5076at 179.671 kb on - strand, within GFF5076at 179.671 kb on - strand, within GFF5076at 179.671 kb on - strand, within GFF5076at 179.671 kb on - strand, within GFF5076at 179.676 kb on + strand, within GFF5076at 179.676 kb on + strand, within GFF5076at 179.676 kb on + strand, within GFF5076at 179.677 kb on - strand, within GFF5076at 179.677 kb on - strand, within GFF5076at 179.677 kb on - strand, within GFF5076at 179.677 kb on - strand, within GFF5076at 179.677 kb on - strand, within GFF5076at 179.677 kb on - strand, within GFF5076

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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176,761 - +0.1
176,804 + -0.7
176,805 - +0.4
176,815 - -0.5
176,925 + -0.8
176,925 + +0.2
176,925 + -1.1
176,925 + +0.3
176,925 + +1.8
176,926 - GFF5074 0.10 -0.3
176,926 - GFF5074 0.10 -1.8
177,097 + GFF5074 0.34 +0.1
177,097 + GFF5074 0.34 -0.1
177,097 + GFF5074 0.34 +0.1
177,097 + GFF5074 0.34 -0.2
177,097 + GFF5074 0.34 +0.3
177,098 - GFF5074 0.34 -0.4
177,172 - GFF5074 0.44 -0.3
177,172 - GFF5074 0.44 +1.2
177,351 + GFF5074 0.69 +0.2
177,351 + GFF5074 0.69 -0.3
177,351 + GFF5074 0.69 -0.6
177,352 - GFF5074 0.69 +0.1
177,352 - GFF5074 0.69 +0.4
177,352 - GFF5074 0.69 -0.7
177,549 + +0.2
177,549 + -1.2
177,549 + +0.8
177,549 + -0.3
177,550 - +0.0
177,550 - +0.1
177,550 - +0.0
177,550 - +0.8
177,602 - -0.7
177,602 - -0.7
177,602 - -0.6
177,616 + -1.0
177,616 + -0.4
177,616 + +1.2
177,616 + -0.0
177,616 + -0.6
177,616 + -0.2
177,616 + -0.5
177,617 - -0.1
177,617 - +0.0
177,617 - -0.2
177,617 - +1.1
177,617 - -0.8
177,617 - +0.4
177,964 + GFF5075 0.32 +0.6
178,839 + +0.5
178,839 + -0.4
178,840 - +0.0
178,840 - -0.5
178,854 - +0.2
178,854 - -0.9
178,854 - +0.7
178,930 - +0.2
178,930 - -0.5
178,930 - -0.4
178,930 - +1.0
178,930 - -1.3
178,930 - +0.2
178,989 + -1.1
178,989 + -1.2
178,989 + -0.4
179,034 + GFF5076 0.12 +0.8
179,110 + GFF5076 0.18 -0.5
179,110 + GFF5076 0.18 -0.1
179,110 + GFF5076 0.18 -0.5
179,110 + GFF5076 0.18 +0.0
179,110 + GFF5076 0.18 -1.0
179,110 + GFF5076 0.18 -0.4
179,110 + GFF5076 0.18 +0.0
179,111 - GFF5076 0.18 -1.1
179,111 - GFF5076 0.18 +0.1
179,111 - GFF5076 0.18 -0.6
179,111 - GFF5076 0.18 -0.1
179,111 - GFF5076 0.18 -0.5
179,111 - GFF5076 0.18 -0.9
179,226 + GFF5076 0.28 -1.1
179,227 - GFF5076 0.28 -0.4
179,246 + GFF5076 0.30 +0.8
179,246 + GFF5076 0.30 -0.6
179,246 + GFF5076 0.30 -0.0
179,246 + GFF5076 0.30 -0.5
179,246 + GFF5076 0.30 +0.5
179,246 + GFF5076 0.30 -0.3
179,246 + GFF5076 0.30 -1.6
179,247 - GFF5076 0.30 -1.3
179,568 + GFF5076 0.56 -1.1
179,568 + GFF5076 0.56 +0.5
179,568 + GFF5076 0.56 -0.6
179,569 - GFF5076 0.56 +1.0
179,617 + GFF5076 0.60 -1.1
179,617 + GFF5076 0.60 -0.4
179,618 - GFF5076 0.60 +0.1
179,667 + GFF5076 0.64 -0.5
179,667 + GFF5076 0.64 +0.1
179,667 + GFF5076 0.64 -2.3
179,667 + GFF5076 0.64 -0.7
179,668 - GFF5076 0.64 +0.5
179,668 - GFF5076 0.64 -2.3
179,670 + GFF5076 0.64 +1.0
179,670 + GFF5076 0.64 -1.5
179,670 + GFF5076 0.64 -0.4
179,670 + GFF5076 0.64 -1.2
179,670 + GFF5076 0.64 -1.3
179,670 + GFF5076 0.64 -1.8
179,670 + GFF5076 0.64 -2.5
179,670 + GFF5076 0.64 +0.5
179,670 + GFF5076 0.64 -0.2
179,670 + GFF5076 0.64 -1.7
179,670 + GFF5076 0.64 +0.0
179,670 + GFF5076 0.64 -0.9
179,670 + GFF5076 0.64 -0.5
179,670 + GFF5076 0.64 -1.2
179,670 + GFF5076 0.64 -0.6
179,670 + GFF5076 0.64 -1.5
179,670 + GFF5076 0.64 +0.8
179,670 - GFF5076 0.64 -0.7
179,671 - GFF5076 0.65 -0.1
179,671 - GFF5076 0.65 -1.9
179,671 - GFF5076 0.65 +0.1
179,671 - GFF5076 0.65 -0.8
179,671 - GFF5076 0.65 -1.0
179,671 - GFF5076 0.65 -1.4
179,671 - GFF5076 0.65 -1.6
179,671 - GFF5076 0.65 -0.9
179,671 - GFF5076 0.65 -0.4
179,671 - GFF5076 0.65 -0.2
179,671 - GFF5076 0.65 -1.5
179,671 - GFF5076 0.65 -0.8
179,671 - GFF5076 0.65 -0.6
179,671 - GFF5076 0.65 +0.4
179,671 - GFF5076 0.65 -1.5
179,671 - GFF5076 0.65 -0.2
179,671 - GFF5076 0.65 -0.4
179,671 - GFF5076 0.65 +0.7
179,671 - GFF5076 0.65 +0.8
179,671 - GFF5076 0.65 -1.3
179,671 - GFF5076 0.65 -0.8
179,671 - GFF5076 0.65 -0.2
179,671 - GFF5076 0.65 -0.0
179,676 + GFF5076 0.65 -0.8
179,676 + GFF5076 0.65 -0.2
179,676 + GFF5076 0.65 -1.0
179,677 - GFF5076 0.65 +0.2
179,677 - GFF5076 0.65 -0.9
179,677 - GFF5076 0.65 -1.0
179,677 - GFF5076 0.65 -1.3
179,677 - GFF5076 0.65 -1.0
179,677 - GFF5076 0.65 -0.4

Or see this region's nucleotide sequence