Strain Fitness in Variovorax sp. SCN45 around GFF5036

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5035 and GFF5036 overlap by 4 nucleotidesGFF5036 and GFF5037 are separated by 21 nucleotides GFF5035 - Opine oxidase subunit A, at 134,905 to 136,302 GFF5035 GFF5036 - Opine oxidase subunit B, at 136,299 to 137,462 GFF5036 GFF5037 - ABC transporter spermidine/putrescine-binding protein, at 137,484 to 138,536 GFF5037 Position (kb) 136 137 138Strain fitness (log2 ratio) -2 -1 0 1 2at 135.313 kb on + strand, within GFF5035at 135.314 kb on - strand, within GFF5035at 135.314 kb on - strand, within GFF5035at 135.314 kb on - strand, within GFF5035at 135.314 kb on - strand, within GFF5035at 135.314 kb on - strand, within GFF5035at 135.314 kb on - strand, within GFF5035at 135.403 kb on + strand, within GFF5035at 135.403 kb on + strand, within GFF5035at 135.403 kb on + strand, within GFF5035at 135.403 kb on + strand, within GFF5035at 135.403 kb on + strand, within GFF5035at 135.403 kb on + strand, within GFF5035at 135.404 kb on - strand, within GFF5035at 135.404 kb on - strand, within GFF5035at 135.415 kb on + strand, within GFF5035at 135.415 kb on + strand, within GFF5035at 135.415 kb on + strand, within GFF5035at 135.415 kb on + strand, within GFF5035at 135.416 kb on - strand, within GFF5035at 135.416 kb on - strand, within GFF5035at 135.416 kb on - strand, within GFF5035at 135.421 kb on + strand, within GFF5035at 135.421 kb on + strand, within GFF5035at 135.422 kb on - strand, within GFF5035at 135.422 kb on - strand, within GFF5035at 135.535 kb on + strand, within GFF5035at 135.535 kb on + strand, within GFF5035at 135.535 kb on + strand, within GFF5035at 135.535 kb on + strand, within GFF5035at 135.535 kb on + strand, within GFF5035at 135.535 kb on + strand, within GFF5035at 135.535 kb on + strand, within GFF5035at 135.536 kb on - strand, within GFF5035at 135.536 kb on - strand, within GFF5035at 135.536 kb on - strand, within GFF5035at 135.536 kb on - strand, within GFF5035at 135.536 kb on - strand, within GFF5035at 135.538 kb on + strand, within GFF5035at 135.538 kb on + strand, within GFF5035at 135.538 kb on + strand, within GFF5035at 135.538 kb on + strand, within GFF5035at 135.539 kb on - strand, within GFF5035at 135.539 kb on - strand, within GFF5035at 135.539 kb on - strand, within GFF5035at 135.539 kb on - strand, within GFF5035at 135.539 kb on - strand, within GFF5035at 135.539 kb on - strand, within GFF5035at 135.539 kb on - strand, within GFF5035at 135.539 kb on - strand, within GFF5035at 135.719 kb on + strand, within GFF5035at 135.719 kb on + strand, within GFF5035at 135.719 kb on + strand, within GFF5035at 135.758 kb on + strand, within GFF5035at 135.759 kb on - strand, within GFF5035at 135.759 kb on - strand, within GFF5035at 135.817 kb on + strand, within GFF5035at 135.818 kb on - strand, within GFF5035at 136.557 kb on + strand, within GFF5036at 136.557 kb on + strand, within GFF5036at 136.557 kb on + strand, within GFF5036at 136.558 kb on - strand, within GFF5036at 136.621 kb on - strand, within GFF5036at 137.058 kb on + strand, within GFF5036at 137.058 kb on + strand, within GFF5036at 137.058 kb on + strand, within GFF5036at 137.059 kb on - strand, within GFF5036at 137.059 kb on - strand, within GFF5036at 137.059 kb on - strand, within GFF5036at 137.238 kb on + strand, within GFF5036at 137.238 kb on + strand, within GFF5036at 137.239 kb on - strand, within GFF5036at 137.239 kb on - strand, within GFF5036at 137.239 kb on - strand, within GFF5036at 137.239 kb on - strand, within GFF5036at 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.577 kb on + strandat 137.578 kb on - strandat 137.578 kb on - strandat 137.578 kb on - strandat 137.578 kb on - strandat 137.578 kb on - strandat 137.613 kb on + strand, within GFF5037at 137.613 kb on + strand, within GFF5037at 137.613 kb on + strand, within GFF5037at 137.613 kb on + strand, within GFF5037at 137.614 kb on - strand, within GFF5037at 137.614 kb on - strand, within GFF5037at 137.622 kb on + strand, within GFF5037at 137.622 kb on + strand, within GFF5037at 137.622 kb on + strand, within GFF5037at 137.622 kb on + strand, within GFF5037at 137.622 kb on + strand, within GFF5037at 137.622 kb on + strand, within GFF5037at 137.622 kb on + strand, within GFF5037at 137.622 kb on + strand, within GFF5037at 137.622 kb on + strand, within GFF5037at 137.623 kb on - strand, within GFF5037at 137.623 kb on - strand, within GFF5037at 137.623 kb on - strand, within GFF5037at 137.623 kb on - strand, within GFF5037at 137.623 kb on - strand, within GFF5037at 137.623 kb on - strand, within GFF5037at 137.623 kb on - strand, within GFF5037at 137.623 kb on - strand, within GFF5037at 137.623 kb on - strand, within GFF5037at 137.623 kb on - strand, within GFF5037at 137.649 kb on + strand, within GFF5037at 137.650 kb on - strand, within GFF5037at 137.826 kb on + strand, within GFF5037at 137.826 kb on + strand, within GFF5037at 137.827 kb on - strand, within GFF5037at 137.827 kb on - strand, within GFF5037at 137.892 kb on + strand, within GFF5037at 137.892 kb on + strand, within GFF5037at 137.892 kb on + strand, within GFF5037at 137.893 kb on - strand, within GFF5037at 137.893 kb on - strand, within GFF5037at 137.893 kb on - strand, within GFF5037at 137.893 kb on - strand, within GFF5037at 137.893 kb on - strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.964 kb on + strand, within GFF5037at 137.965 kb on - strand, within GFF5037at 137.965 kb on - strand, within GFF5037at 137.965 kb on - strand, within GFF5037at 137.965 kb on - strand, within GFF5037at 138.117 kb on + strand, within GFF5037at 138.117 kb on + strand, within GFF5037at 138.117 kb on + strand, within GFF5037at 138.117 kb on + strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.118 kb on - strand, within GFF5037at 138.231 kb on + strand, within GFF5037at 138.231 kb on + strand, within GFF5037at 138.232 kb on - strand, within GFF5037at 138.366 kb on + strand, within GFF5037at 138.367 kb on - strand, within GFF5037

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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135,313 + GFF5035 0.29 -0.2
135,314 - GFF5035 0.29 +0.5
135,314 - GFF5035 0.29 +0.2
135,314 - GFF5035 0.29 -0.2
135,314 - GFF5035 0.29 -0.8
135,314 - GFF5035 0.29 -0.9
135,314 - GFF5035 0.29 +1.1
135,403 + GFF5035 0.36 -0.2
135,403 + GFF5035 0.36 -1.1
135,403 + GFF5035 0.36 -0.2
135,403 + GFF5035 0.36 +0.8
135,403 + GFF5035 0.36 -0.8
135,403 + GFF5035 0.36 -0.6
135,404 - GFF5035 0.36 -1.1
135,404 - GFF5035 0.36 -0.5
135,415 + GFF5035 0.36 -0.5
135,415 + GFF5035 0.36 +0.7
135,415 + GFF5035 0.36 -0.2
135,415 + GFF5035 0.36 +0.2
135,416 - GFF5035 0.37 -0.8
135,416 - GFF5035 0.37 -1.0
135,416 - GFF5035 0.37 -1.0
135,421 + GFF5035 0.37 -0.5
135,421 + GFF5035 0.37 +0.1
135,422 - GFF5035 0.37 -0.2
135,422 - GFF5035 0.37 +0.5
135,535 + GFF5035 0.45 +0.2
135,535 + GFF5035 0.45 +0.2
135,535 + GFF5035 0.45 -1.6
135,535 + GFF5035 0.45 +1.8
135,535 + GFF5035 0.45 +1.2
135,535 + GFF5035 0.45 +0.8
135,535 + GFF5035 0.45 -1.3
135,536 - GFF5035 0.45 -1.4
135,536 - GFF5035 0.45 +1.8
135,536 - GFF5035 0.45 +0.8
135,536 - GFF5035 0.45 +0.1
135,536 - GFF5035 0.45 -0.8
135,538 + GFF5035 0.45 +1.2
135,538 + GFF5035 0.45 -0.5
135,538 + GFF5035 0.45 -0.9
135,538 + GFF5035 0.45 +0.2
135,539 - GFF5035 0.45 -0.6
135,539 - GFF5035 0.45 -1.3
135,539 - GFF5035 0.45 -0.5
135,539 - GFF5035 0.45 -1.2
135,539 - GFF5035 0.45 -0.7
135,539 - GFF5035 0.45 +0.0
135,539 - GFF5035 0.45 -0.8
135,539 - GFF5035 0.45 -0.4
135,719 + GFF5035 0.58 -1.2
135,719 + GFF5035 0.58 +1.4
135,719 + GFF5035 0.58 -0.3
135,758 + GFF5035 0.61 -1.4
135,759 - GFF5035 0.61 +0.1
135,759 - GFF5035 0.61 -0.1
135,817 + GFF5035 0.65 -0.5
135,818 - GFF5035 0.65 -0.8
136,557 + GFF5036 0.22 -1.1
136,557 + GFF5036 0.22 -0.4
136,557 + GFF5036 0.22 +1.8
136,558 - GFF5036 0.22 -1.3
136,621 - GFF5036 0.28 -1.0
137,058 + GFF5036 0.65 -1.8
137,058 + GFF5036 0.65 +0.1
137,058 + GFF5036 0.65 -1.0
137,059 - GFF5036 0.65 -1.8
137,059 - GFF5036 0.65 -1.8
137,059 - GFF5036 0.65 -0.2
137,238 + GFF5036 0.81 -1.2
137,238 + GFF5036 0.81 +0.8
137,239 - GFF5036 0.81 -1.0
137,239 - GFF5036 0.81 -1.0
137,239 - GFF5036 0.81 -0.6
137,239 - GFF5036 0.81 +0.5
137,577 + -0.4
137,577 + +0.6
137,577 + +0.2
137,577 + -0.3
137,577 + +0.2
137,577 + +0.2
137,577 + +0.5
137,577 + -0.3
137,577 + -0.2
137,577 + +0.8
137,577 + -0.6
137,577 + +0.5
137,577 + -0.8
137,577 + -1.4
137,578 - +0.0
137,578 - +1.8
137,578 - +1.8
137,578 - -0.2
137,578 - -0.6
137,613 + GFF5037 0.12 -0.2
137,613 + GFF5037 0.12 -1.3
137,613 + GFF5037 0.12 +0.3
137,613 + GFF5037 0.12 -0.2
137,614 - GFF5037 0.12 -0.3
137,614 - GFF5037 0.12 -0.2
137,622 + GFF5037 0.13 -0.2
137,622 + GFF5037 0.13 +0.3
137,622 + GFF5037 0.13 -0.8
137,622 + GFF5037 0.13 -0.2
137,622 + GFF5037 0.13 -0.8
137,622 + GFF5037 0.13 -0.3
137,622 + GFF5037 0.13 -1.5
137,622 + GFF5037 0.13 -0.2
137,622 + GFF5037 0.13 +0.8
137,623 - GFF5037 0.13 +0.4
137,623 - GFF5037 0.13 +0.8
137,623 - GFF5037 0.13 +0.4
137,623 - GFF5037 0.13 -0.6
137,623 - GFF5037 0.13 +0.9
137,623 - GFF5037 0.13 +1.4
137,623 - GFF5037 0.13 -0.5
137,623 - GFF5037 0.13 -0.3
137,623 - GFF5037 0.13 -0.5
137,623 - GFF5037 0.13 +0.7
137,649 + GFF5037 0.16 +0.7
137,650 - GFF5037 0.16 -0.7
137,826 + GFF5037 0.32 -0.0
137,826 + GFF5037 0.32 -0.3
137,827 - GFF5037 0.33 -0.2
137,827 - GFF5037 0.33 -0.5
137,892 + GFF5037 0.39 +0.2
137,892 + GFF5037 0.39 -1.0
137,892 + GFF5037 0.39 -0.7
137,893 - GFF5037 0.39 -0.3
137,893 - GFF5037 0.39 +0.3
137,893 - GFF5037 0.39 +0.0
137,893 - GFF5037 0.39 +0.4
137,893 - GFF5037 0.39 -0.8
137,964 + GFF5037 0.46 +0.1
137,964 + GFF5037 0.46 -0.7
137,964 + GFF5037 0.46 -1.3
137,964 + GFF5037 0.46 +0.2
137,964 + GFF5037 0.46 +0.4
137,964 + GFF5037 0.46 +0.6
137,964 + GFF5037 0.46 -0.2
137,964 + GFF5037 0.46 -0.2
137,964 + GFF5037 0.46 +0.6
137,964 + GFF5037 0.46 +0.1
137,964 + GFF5037 0.46 +0.6
137,965 - GFF5037 0.46 -0.1
137,965 - GFF5037 0.46 -0.2
137,965 - GFF5037 0.46 +1.8
137,965 - GFF5037 0.46 -0.4
138,117 + GFF5037 0.60 -0.4
138,117 + GFF5037 0.60 -0.2
138,117 + GFF5037 0.60 -0.7
138,117 + GFF5037 0.60 -0.2
138,118 - GFF5037 0.60 +0.3
138,118 - GFF5037 0.60 +1.4
138,118 - GFF5037 0.60 +0.2
138,118 - GFF5037 0.60 -0.3
138,118 - GFF5037 0.60 -0.4
138,118 - GFF5037 0.60 -0.4
138,118 - GFF5037 0.60 +0.1
138,118 - GFF5037 0.60 -0.1
138,118 - GFF5037 0.60 -0.9
138,118 - GFF5037 0.60 +0.2
138,118 - GFF5037 0.60 -0.4
138,231 + GFF5037 0.71 -0.6
138,231 + GFF5037 0.71 -1.3
138,232 - GFF5037 0.71 -0.5
138,366 + GFF5037 0.84 +0.8
138,367 - GFF5037 0.84 +0.8

Or see this region's nucleotide sequence