Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4598 and GFF4599 are separated by 41 nucleotides GFF4599 and GFF4600 are separated by 10 nucleotides GFF4600 and GFF4601 are separated by 120 nucleotides GFF4601 and GFF4602 are separated by 36 nucleotides
GFF4598 - Efflux ABC transporter, permease/ATP-binding protein mlr7818, at 239,756 to 241,588
GFF4598
GFF4599 - Acyl-CoA hydrolase (EC 3.1.2.20), at 241,630 to 242,055
GFF4599
GFF4600 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 242,066 to 243,241
GFF4600
GFF4601 - Enoyl-CoA hydratase (EC 4.2.1.17), at 243,362 to 244,126
GFF4601
GFF4602 - 2-hydroxychromene-2-carboxylate isomerase family protein, at 244,163 to 244,759
GFF4602
Position (kb) 242
243
244 Strain fitness (log2 ratio) -2
-1
0
1
2 at 241.092 kb on + strand, within GFF4598 at 241.093 kb on - strand, within GFF4598 at 241.311 kb on + strand, within GFF4598 at 241.312 kb on - strand, within GFF4598 at 241.470 kb on + strand at 241.470 kb on + strand at 241.470 kb on + strand at 241.470 kb on + strand at 241.470 kb on + strand at 241.482 kb on + strand at 241.638 kb on + strand at 241.805 kb on - strand, within GFF4599 at 241.888 kb on + strand, within GFF4599 at 241.889 kb on - strand, within GFF4599 at 241.972 kb on + strand, within GFF4599 at 241.972 kb on + strand, within GFF4599 at 241.972 kb on + strand, within GFF4599 at 241.972 kb on + strand, within GFF4599 at 241.972 kb on + strand, within GFF4599 at 241.973 kb on - strand, within GFF4599 at 241.973 kb on - strand, within GFF4599 at 241.973 kb on - strand, within GFF4599 at 241.973 kb on - strand, within GFF4599 at 241.973 kb on - strand, within GFF4599 at 242.002 kb on + strand, within GFF4599 at 242.002 kb on + strand, within GFF4599 at 242.002 kb on + strand, within GFF4599 at 242.002 kb on + strand, within GFF4599 at 242.003 kb on - strand, within GFF4599 at 242.003 kb on - strand, within GFF4599 at 242.003 kb on - strand, within GFF4599 at 242.003 kb on - strand, within GFF4599 at 242.003 kb on - strand, within GFF4599 at 242.003 kb on - strand, within GFF4599 at 242.003 kb on - strand, within GFF4599 at 242.003 kb on - strand, within GFF4599 at 242.003 kb on - strand, within GFF4599 at 242.012 kb on + strand, within GFF4599 at 242.012 kb on + strand, within GFF4599 at 242.013 kb on - strand at 242.013 kb on - strand at 242.151 kb on + strand at 242.152 kb on - strand at 242.152 kb on - strand at 242.152 kb on - strand at 242.152 kb on - strand at 242.332 kb on - strand, within GFF4600 at 242.415 kb on + strand, within GFF4600 at 242.415 kb on + strand, within GFF4600 at 242.415 kb on + strand, within GFF4600 at 242.416 kb on - strand, within GFF4600 at 242.416 kb on - strand, within GFF4600 at 242.466 kb on + strand, within GFF4600 at 242.466 kb on + strand, within GFF4600 at 242.466 kb on + strand, within GFF4600 at 242.466 kb on + strand, within GFF4600 at 242.466 kb on + strand, within GFF4600 at 242.466 kb on + strand, within GFF4600 at 242.466 kb on + strand, within GFF4600 at 242.466 kb on + strand, within GFF4600 at 242.467 kb on - strand, within GFF4600 at 242.467 kb on - strand, within GFF4600 at 242.467 kb on - strand, within GFF4600 at 242.622 kb on + strand, within GFF4600 at 242.622 kb on + strand, within GFF4600 at 242.623 kb on - strand, within GFF4600 at 242.623 kb on - strand, within GFF4600 at 242.623 kb on - strand, within GFF4600 at 242.623 kb on - strand, within GFF4600 at 242.733 kb on + strand, within GFF4600 at 242.734 kb on - strand, within GFF4600 at 242.734 kb on - strand, within GFF4600 at 242.922 kb on + strand, within GFF4600 at 242.923 kb on - strand, within GFF4600 at 243.230 kb on - strand at 243.254 kb on + strand at 243.255 kb on - strand at 243.334 kb on + strand at 243.334 kb on + strand at 243.334 kb on + strand at 243.334 kb on + strand at 243.335 kb on - strand at 243.335 kb on - strand at 243.335 kb on - strand at 243.681 kb on + strand, within GFF4601 at 243.777 kb on + strand, within GFF4601 at 243.777 kb on + strand, within GFF4601 at 243.777 kb on + strand, within GFF4601 at 243.778 kb on - strand, within GFF4601 at 243.778 kb on - strand, within GFF4601 at 243.778 kb on - strand, within GFF4601 at 243.778 kb on - strand, within GFF4601 at 243.778 kb on - strand, within GFF4601 at 244.035 kb on + strand, within GFF4601 at 244.035 kb on + strand, within GFF4601 at 244.035 kb on + strand, within GFF4601 at 244.035 kb on + strand, within GFF4601 at 244.036 kb on - strand, within GFF4601 at 244.036 kb on - strand, within GFF4601 at 244.141 kb on + strand at 244.141 kb on + strand at 244.142 kb on - strand at 244.142 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 241,092 + GFF4598 0.73 -0.6 241,093 - GFF4598 0.73 +0.7 241,311 + GFF4598 0.85 -1.3 241,312 - GFF4598 0.85 -1.1 241,470 + +0.1 241,470 + +0.1 241,470 + +0.6 241,470 + +0.5 241,470 + -0.2 241,482 + -0.8 241,638 + -0.9 241,805 - GFF4599 0.41 -0.7 241,888 + GFF4599 0.61 -0.2 241,889 - GFF4599 0.61 +1.8 241,972 + GFF4599 0.80 +0.3 241,972 + GFF4599 0.80 -0.7 241,972 + GFF4599 0.80 +0.4 241,972 + GFF4599 0.80 +0.2 241,972 + GFF4599 0.80 -1.2 241,973 - GFF4599 0.81 +0.8 241,973 - GFF4599 0.81 -0.4 241,973 - GFF4599 0.81 +0.3 241,973 - GFF4599 0.81 +0.3 241,973 - GFF4599 0.81 +1.4 242,002 + GFF4599 0.87 +0.6 242,002 + GFF4599 0.87 -0.1 242,002 + GFF4599 0.87 +0.3 242,002 + GFF4599 0.87 -0.5 242,003 - GFF4599 0.88 -0.4 242,003 - GFF4599 0.88 -2.1 242,003 - GFF4599 0.88 -0.0 242,003 - GFF4599 0.88 -0.2 242,003 - GFF4599 0.88 -0.5 242,003 - GFF4599 0.88 -0.1 242,003 - GFF4599 0.88 -1.3 242,003 - GFF4599 0.88 -0.0 242,003 - GFF4599 0.88 -0.2 242,012 + GFF4599 0.90 +0.6 242,012 + GFF4599 0.90 -1.1 242,013 - -0.1 242,013 - +0.0 242,151 + +0.2 242,152 - -0.7 242,152 - +0.2 242,152 - -1.0 242,152 - +0.1 242,332 - GFF4600 0.23 -0.5 242,415 + GFF4600 0.30 -0.4 242,415 + GFF4600 0.30 -1.2 242,415 + GFF4600 0.30 -0.2 242,416 - GFF4600 0.30 +0.7 242,416 - GFF4600 0.30 +0.3 242,466 + GFF4600 0.34 +0.5 242,466 + GFF4600 0.34 -0.2 242,466 + GFF4600 0.34 -0.5 242,466 + GFF4600 0.34 +0.3 242,466 + GFF4600 0.34 -1.8 242,466 + GFF4600 0.34 +0.1 242,466 + GFF4600 0.34 +0.5 242,466 + GFF4600 0.34 -0.7 242,467 - GFF4600 0.34 -0.4 242,467 - GFF4600 0.34 -0.2 242,467 - GFF4600 0.34 -1.5 242,622 + GFF4600 0.47 -0.4 242,622 + GFF4600 0.47 -1.4 242,623 - GFF4600 0.47 -0.1 242,623 - GFF4600 0.47 -1.4 242,623 - GFF4600 0.47 -0.4 242,623 - GFF4600 0.47 -0.2 242,733 + GFF4600 0.57 +0.1 242,734 - GFF4600 0.57 -0.1 242,734 - GFF4600 0.57 -0.4 242,922 + GFF4600 0.73 -0.7 242,923 - GFF4600 0.73 -1.3 243,230 - -0.2 243,254 + +0.5 243,255 - +0.2 243,334 + -0.2 243,334 + +0.2 243,334 + -0.8 243,334 + +0.2 243,335 - -0.2 243,335 - +0.5 243,335 - +0.7 243,681 + GFF4601 0.42 -0.5 243,777 + GFF4601 0.54 -0.5 243,777 + GFF4601 0.54 -0.0 243,777 + GFF4601 0.54 -1.1 243,778 - GFF4601 0.54 +0.3 243,778 - GFF4601 0.54 -0.2 243,778 - GFF4601 0.54 -0.5 243,778 - GFF4601 0.54 +0.7 243,778 - GFF4601 0.54 +1.3 244,035 + GFF4601 0.88 +0.3 244,035 + GFF4601 0.88 +0.2 244,035 + GFF4601 0.88 -0.4 244,035 + GFF4601 0.88 +0.2 244,036 - GFF4601 0.88 +1.8 244,036 - GFF4601 0.88 -1.7 244,141 + -0.3 244,141 + -0.5 244,142 - -0.7 244,142 - -0.7
Or see this region's nucleotide sequence