Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4555 and GFF4556 overlap by 4 nucleotides GFF4556 and GFF4557 overlap by 4 nucleotides GFF4557 and GFF4558 overlap by 4 nucleotides GFF4558 and GFF4559 are separated by 3 nucleotides GFF4559 and GFF4560 are separated by 97 nucleotides
GFF4555 - Putative transmembrane protein, at 192,074 to 192,829
GFF4555
GFF4556 - hypothetical protein, at 192,826 to 193,626
GFF4556
GFF4557 - Dihydroorotase (EC 3.5.2.3), at 193,623 to 194,654
GFF4557
GFF4558 - RNA polymerase ECF-type sigma factor, at 194,651 to 195,193
GFF4558
GFF4559 - Uncharacterized membrane protein Rmet_3714, at 195,197 to 195,406
GFF4559
GFF4560 - hypothetical protein, at 195,504 to 196,235
GFF4560
Position (kb)
193
194
195 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 192.651 kb on + strand, within GFF4555 at 192.652 kb on - strand, within GFF4555 at 192.652 kb on - strand, within GFF4555 at 192.652 kb on - strand, within GFF4555 at 192.695 kb on + strand, within GFF4555 at 192.695 kb on + strand, within GFF4555 at 192.696 kb on - strand, within GFF4555 at 192.696 kb on - strand, within GFF4555 at 192.696 kb on - strand, within GFF4555 at 192.696 kb on - strand, within GFF4555 at 193.232 kb on + strand, within GFF4556 at 193.232 kb on + strand, within GFF4556 at 193.232 kb on + strand, within GFF4556 at 193.232 kb on + strand, within GFF4556 at 193.232 kb on + strand, within GFF4556 at 193.232 kb on + strand, within GFF4556 at 193.232 kb on + strand, within GFF4556 at 193.233 kb on - strand, within GFF4556 at 193.233 kb on - strand, within GFF4556 at 193.233 kb on - strand, within GFF4556 at 193.233 kb on - strand, within GFF4556 at 193.233 kb on - strand, within GFF4556 at 193.233 kb on - strand, within GFF4556 at 193.233 kb on - strand, within GFF4556 at 193.233 kb on - strand, within GFF4556 at 193.233 kb on - strand, within GFF4556 at 193.505 kb on + strand, within GFF4556 at 193.505 kb on + strand, within GFF4556 at 193.505 kb on + strand, within GFF4556 at 193.506 kb on - strand, within GFF4556 at 193.506 kb on - strand, within GFF4556 at 193.506 kb on - strand, within GFF4556 at 193.506 kb on - strand, within GFF4556 at 193.506 kb on - strand, within GFF4556 at 193.506 kb on - strand, within GFF4556 at 193.532 kb on + strand, within GFF4556 at 193.533 kb on - strand, within GFF4556 at 193.756 kb on + strand, within GFF4557 at 193.756 kb on + strand, within GFF4557 at 193.756 kb on + strand, within GFF4557 at 193.756 kb on + strand, within GFF4557 at 193.757 kb on - strand, within GFF4557 at 193.757 kb on - strand, within GFF4557 at 193.858 kb on + strand, within GFF4557 at 194.005 kb on + strand, within GFF4557 at 194.005 kb on + strand, within GFF4557 at 194.005 kb on + strand, within GFF4557 at 194.006 kb on - strand, within GFF4557 at 194.006 kb on - strand, within GFF4557 at 194.006 kb on - strand, within GFF4557 at 194.006 kb on - strand, within GFF4557 at 194.008 kb on + strand, within GFF4557 at 194.008 kb on + strand, within GFF4557 at 194.009 kb on - strand, within GFF4557 at 194.009 kb on - strand, within GFF4557 at 194.009 kb on - strand, within GFF4557 at 194.009 kb on - strand, within GFF4557 at 194.050 kb on + strand, within GFF4557 at 194.050 kb on + strand, within GFF4557 at 194.050 kb on + strand, within GFF4557 at 194.050 kb on + strand, within GFF4557 at 194.051 kb on - strand, within GFF4557 at 194.051 kb on - strand, within GFF4557 at 194.051 kb on - strand, within GFF4557 at 194.107 kb on + strand, within GFF4557 at 194.107 kb on + strand, within GFF4557 at 194.107 kb on + strand, within GFF4557 at 194.108 kb on - strand, within GFF4557 at 194.296 kb on + strand, within GFF4557 at 194.296 kb on + strand, within GFF4557 at 194.296 kb on + strand, within GFF4557 at 194.296 kb on + strand, within GFF4557 at 194.296 kb on + strand, within GFF4557 at 194.297 kb on - strand, within GFF4557 at 194.297 kb on - strand, within GFF4557 at 194.297 kb on - strand, within GFF4557 at 194.297 kb on - strand, within GFF4557 at 194.297 kb on - strand, within GFF4557 at 194.297 kb on - strand, within GFF4557 at 194.297 kb on - strand, within GFF4557 at 194.297 kb on - strand, within GFF4557 at 194.353 kb on + strand, within GFF4557 at 194.688 kb on + strand at 194.689 kb on - strand at 194.814 kb on + strand, within GFF4558 at 194.814 kb on + strand, within GFF4558 at 194.815 kb on - strand, within GFF4558 at 194.815 kb on - strand, within GFF4558 at 194.815 kb on - strand, within GFF4558 at 194.815 kb on - strand, within GFF4558 at 194.815 kb on - strand, within GFF4558 at 195.030 kb on + strand, within GFF4558 at 195.088 kb on - strand, within GFF4558 at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.399 kb on + strand at 195.400 kb on - strand at 195.400 kb on - strand at 195.400 kb on - strand at 195.400 kb on - strand at 195.505 kb on + strand at 195.505 kb on + strand at 195.505 kb on + strand at 195.505 kb on + strand at 195.505 kb on + strand at 195.506 kb on - strand at 195.506 kb on - strand at 195.506 kb on - strand at 195.506 kb on - strand at 195.506 kb on - strand at 195.506 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 192,651 + GFF4555 0.76 +0.0 192,652 - GFF4555 0.76 -0.3 192,652 - GFF4555 0.76 +0.3 192,652 - GFF4555 0.76 -1.0 192,695 + GFF4555 0.82 -0.6 192,695 + GFF4555 0.82 -1.9 192,696 - GFF4555 0.82 +0.2 192,696 - GFF4555 0.82 -0.2 192,696 - GFF4555 0.82 -0.5 192,696 - GFF4555 0.82 +0.5 193,232 + GFF4556 0.51 +0.7 193,232 + GFF4556 0.51 +0.8 193,232 + GFF4556 0.51 -0.2 193,232 + GFF4556 0.51 -0.5 193,232 + GFF4556 0.51 +1.0 193,232 + GFF4556 0.51 -0.0 193,232 + GFF4556 0.51 +1.2 193,233 - GFF4556 0.51 +0.7 193,233 - GFF4556 0.51 -0.1 193,233 - GFF4556 0.51 -0.7 193,233 - GFF4556 0.51 +0.0 193,233 - GFF4556 0.51 -0.1 193,233 - GFF4556 0.51 +1.2 193,233 - GFF4556 0.51 -0.9 193,233 - GFF4556 0.51 -0.2 193,233 - GFF4556 0.51 -0.0 193,505 + GFF4556 0.85 +0.3 193,505 + GFF4556 0.85 -0.9 193,505 + GFF4556 0.85 +0.5 193,506 - GFF4556 0.85 -1.7 193,506 - GFF4556 0.85 +0.6 193,506 - GFF4556 0.85 +0.7 193,506 - GFF4556 0.85 +0.3 193,506 - GFF4556 0.85 +0.1 193,506 - GFF4556 0.85 -1.4 193,532 + GFF4556 0.88 -0.2 193,533 - GFF4556 0.88 +0.4 193,756 + GFF4557 0.13 -0.2 193,756 + GFF4557 0.13 +0.2 193,756 + GFF4557 0.13 -0.5 193,756 + GFF4557 0.13 -0.2 193,757 - GFF4557 0.13 -0.0 193,757 - GFF4557 0.13 -1.9 193,858 + GFF4557 0.23 -0.2 194,005 + GFF4557 0.37 -0.2 194,005 + GFF4557 0.37 -1.0 194,005 + GFF4557 0.37 -0.5 194,006 - GFF4557 0.37 -0.2 194,006 - GFF4557 0.37 +0.4 194,006 - GFF4557 0.37 -0.5 194,006 - GFF4557 0.37 +1.8 194,008 + GFF4557 0.37 -0.0 194,008 + GFF4557 0.37 +0.2 194,009 - GFF4557 0.37 -0.5 194,009 - GFF4557 0.37 -0.0 194,009 - GFF4557 0.37 -1.5 194,009 - GFF4557 0.37 -0.5 194,050 + GFF4557 0.41 +1.2 194,050 + GFF4557 0.41 +0.2 194,050 + GFF4557 0.41 +1.8 194,050 + GFF4557 0.41 +0.2 194,051 - GFF4557 0.41 -2.2 194,051 - GFF4557 0.41 -0.2 194,051 - GFF4557 0.41 -1.3 194,107 + GFF4557 0.47 -1.2 194,107 + GFF4557 0.47 -1.4 194,107 + GFF4557 0.47 -1.4 194,108 - GFF4557 0.47 +1.8 194,296 + GFF4557 0.65 +0.8 194,296 + GFF4557 0.65 +1.8 194,296 + GFF4557 0.65 -0.2 194,296 + GFF4557 0.65 -2.0 194,296 + GFF4557 0.65 +0.2 194,297 - GFF4557 0.65 +0.2 194,297 - GFF4557 0.65 -1.2 194,297 - GFF4557 0.65 -2.2 194,297 - GFF4557 0.65 -1.5 194,297 - GFF4557 0.65 +0.5 194,297 - GFF4557 0.65 -0.5 194,297 - GFF4557 0.65 +1.4 194,297 - GFF4557 0.65 -0.9 194,353 + GFF4557 0.71 -1.4 194,688 + -0.1 194,689 - +0.2 194,814 + GFF4558 0.30 +1.2 194,814 + GFF4558 0.30 +0.2 194,815 - GFF4558 0.30 -1.0 194,815 - GFF4558 0.30 -0.2 194,815 - GFF4558 0.30 +0.2 194,815 - GFF4558 0.30 -0.4 194,815 - GFF4558 0.30 +0.4 195,030 + GFF4558 0.70 -2.0 195,088 - GFF4558 0.80 +0.3 195,399 + -0.0 195,399 + -0.0 195,399 + +0.8 195,399 + +0.0 195,399 + -2.1 195,399 + -0.8 195,399 + -0.8 195,399 + +0.2 195,399 + +0.5 195,399 + -0.3 195,399 + -0.2 195,399 + -0.2 195,399 + +1.2 195,399 + +0.7 195,399 + +0.3 195,400 - +0.1 195,400 - -0.8 195,400 - -1.9 195,400 - -0.1 195,505 + -1.1 195,505 + -0.9 195,505 + -2.0 195,505 + -0.2 195,505 + -0.8 195,506 - +0.8 195,506 - -1.3 195,506 - +0.5 195,506 - -0.3 195,506 - -1.8 195,506 - -0.1
Or see this region's nucleotide sequence