Strain Fitness in Variovorax sp. SCN45 around GFF4437

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4436 and GFF4437 are separated by 196 nucleotidesGFF4437 and GFF4438 are separated by 84 nucleotides GFF4436 - Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1), at 75,834 to 77,015 GFF4436 GFF4437 - Low-complexity acidic protein, XCC2875 type, at 77,212 to 77,757 GFF4437 GFF4438 - Sugar kinases, ribokinase family, at 77,842 to 78,744 GFF4438 Position (kb) 77 78Strain fitness (log2 ratio) -2 -1 0 1at 77.032 kb on + strandat 77.032 kb on + strandat 77.032 kb on + strandat 77.032 kb on + strandat 77.032 kb on + strandat 77.032 kb on + strandat 77.032 kb on + strandat 77.033 kb on - strandat 77.033 kb on - strandat 77.033 kb on - strandat 77.174 kb on + strandat 77.174 kb on + strandat 77.174 kb on + strandat 77.174 kb on + strandat 77.174 kb on + strandat 77.174 kb on + strandat 77.174 kb on + strandat 77.174 kb on + strandat 77.174 kb on + strandat 77.174 kb on + strandat 77.174 kb on + strandat 77.174 kb on + strandat 77.175 kb on - strandat 77.175 kb on - strandat 77.175 kb on - strandat 77.175 kb on - strandat 77.175 kb on - strandat 77.175 kb on - strandat 77.175 kb on - strandat 77.175 kb on - strandat 77.175 kb on - strandat 77.175 kb on - strandat 77.207 kb on + strandat 77.207 kb on + strandat 77.207 kb on + strandat 77.208 kb on - strandat 77.208 kb on - strandat 77.208 kb on - strandat 77.238 kb on + strandat 77.239 kb on - strandat 77.286 kb on + strand, within GFF4437at 77.286 kb on + strand, within GFF4437at 77.286 kb on + strand, within GFF4437at 77.286 kb on + strand, within GFF4437at 77.287 kb on - strand, within GFF4437at 77.287 kb on - strand, within GFF4437at 77.287 kb on - strand, within GFF4437at 77.287 kb on - strand, within GFF4437at 77.287 kb on - strand, within GFF4437at 77.287 kb on - strand, within GFF4437at 77.287 kb on - strand, within GFF4437at 77.287 kb on - strand, within GFF4437at 77.287 kb on - strand, within GFF4437at 77.309 kb on + strand, within GFF4437at 77.354 kb on + strand, within GFF4437at 77.355 kb on - strand, within GFF4437at 77.355 kb on - strand, within GFF4437at 77.384 kb on + strand, within GFF4437at 77.384 kb on + strand, within GFF4437at 77.384 kb on + strand, within GFF4437at 77.385 kb on + strand, within GFF4437at 77.385 kb on - strand, within GFF4437at 77.385 kb on - strand, within GFF4437at 77.385 kb on - strand, within GFF4437at 77.385 kb on - strand, within GFF4437at 77.675 kb on + strand, within GFF4437at 77.675 kb on + strand, within GFF4437at 77.675 kb on + strand, within GFF4437at 77.675 kb on + strand, within GFF4437at 77.675 kb on + strand, within GFF4437at 77.675 kb on + strand, within GFF4437at 77.675 kb on + strand, within GFF4437at 77.675 kb on + strand, within GFF4437at 77.675 kb on + strand, within GFF4437at 77.675 kb on + strand, within GFF4437at 77.676 kb on - strand, within GFF4437at 77.816 kb on + strandat 77.817 kb on - strandat 77.817 kb on - strandat 77.873 kb on + strandat 77.873 kb on + strandat 77.873 kb on + strandat 77.873 kb on + strandat 77.873 kb on + strandat 77.873 kb on + strandat 77.873 kb on + strandat 77.873 kb on + strandat 77.873 kb on + strandat 77.873 kb on + strandat 77.874 kb on - strandat 77.874 kb on - strandat 77.874 kb on - strandat 77.874 kb on - strandat 77.874 kb on - strandat 77.874 kb on - strandat 77.874 kb on - strandat 77.874 kb on - strandat 77.951 kb on + strand, within GFF4438at 78.167 kb on + strand, within GFF4438at 78.167 kb on + strand, within GFF4438at 78.167 kb on + strand, within GFF4438at 78.167 kb on + strand, within GFF4438at 78.167 kb on + strand, within GFF4438at 78.167 kb on + strand, within GFF4438at 78.167 kb on + strand, within GFF4438at 78.167 kb on + strand, within GFF4438at 78.168 kb on - strand, within GFF4438at 78.168 kb on - strand, within GFF4438at 78.168 kb on - strand, within GFF4438at 78.168 kb on - strand, within GFF4438at 78.168 kb on - strand, within GFF4438at 78.168 kb on - strand, within GFF4438at 78.515 kb on + strand, within GFF4438at 78.516 kb on - strand, within GFF4438at 78.516 kb on - strand, within GFF4438at 78.581 kb on + strand, within GFF4438at 78.581 kb on + strand, within GFF4438at 78.581 kb on + strand, within GFF4438at 78.581 kb on + strand, within GFF4438at 78.581 kb on + strand, within GFF4438at 78.582 kb on - strand, within GFF4438at 78.582 kb on - strand, within GFF4438at 78.733 kb on + strandat 78.733 kb on + strandat 78.733 kb on + strandat 78.733 kb on + strandat 78.733 kb on + strandat 78.733 kb on + strandat 78.733 kb on + strandat 78.733 kb on + strandat 78.734 kb on - strandat 78.734 kb on - strandat 78.734 kb on - strandat 78.734 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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77,032 + +0.2
77,032 + -1.5
77,032 + -0.7
77,032 + -0.5
77,032 + -0.3
77,032 + -1.0
77,032 + +0.8
77,033 - -1.0
77,033 - -0.4
77,033 - -0.1
77,174 + +0.2
77,174 + +0.8
77,174 + -0.6
77,174 + -1.0
77,174 + -0.4
77,174 + -1.0
77,174 + -0.7
77,174 + -0.0
77,174 + -1.1
77,174 + +0.5
77,174 + -0.0
77,174 + -0.2
77,175 - -0.6
77,175 - +0.5
77,175 - +0.8
77,175 - -1.3
77,175 - -1.0
77,175 - -0.8
77,175 - -1.4
77,175 - -0.9
77,175 - -1.7
77,175 - -1.4
77,207 + -1.4
77,207 + -1.1
77,207 + +0.2
77,208 - -0.9
77,208 - +0.8
77,208 - -0.8
77,238 + +0.2
77,239 - -0.9
77,286 + GFF4437 0.14 -0.4
77,286 + GFF4437 0.14 -1.2
77,286 + GFF4437 0.14 +0.0
77,286 + GFF4437 0.14 +0.3
77,287 - GFF4437 0.14 +0.2
77,287 - GFF4437 0.14 +1.3
77,287 - GFF4437 0.14 -0.9
77,287 - GFF4437 0.14 -0.4
77,287 - GFF4437 0.14 -0.2
77,287 - GFF4437 0.14 -0.5
77,287 - GFF4437 0.14 -0.0
77,287 - GFF4437 0.14 +0.2
77,287 - GFF4437 0.14 +0.7
77,309 + GFF4437 0.18 -0.2
77,354 + GFF4437 0.26 -0.9
77,355 - GFF4437 0.26 +1.2
77,355 - GFF4437 0.26 +0.8
77,384 + GFF4437 0.32 -0.9
77,384 + GFF4437 0.32 -1.7
77,384 + GFF4437 0.32 -0.7
77,385 + GFF4437 0.32 -2.1
77,385 - GFF4437 0.32 -1.7
77,385 - GFF4437 0.32 -1.7
77,385 - GFF4437 0.32 -1.5
77,385 - GFF4437 0.32 -0.5
77,675 + GFF4437 0.85 -1.2
77,675 + GFF4437 0.85 -1.5
77,675 + GFF4437 0.85 -0.3
77,675 + GFF4437 0.85 -1.4
77,675 + GFF4437 0.85 -0.8
77,675 + GFF4437 0.85 -0.2
77,675 + GFF4437 0.85 -1.8
77,675 + GFF4437 0.85 -0.7
77,675 + GFF4437 0.85 -1.3
77,675 + GFF4437 0.85 +0.2
77,676 - GFF4437 0.85 -0.6
77,816 + +0.2
77,817 - -0.1
77,817 - -0.6
77,873 + +0.0
77,873 + -1.4
77,873 + -0.8
77,873 + +0.5
77,873 + -1.4
77,873 + -1.7
77,873 + +0.4
77,873 + +0.7
77,873 + -0.5
77,873 + -0.0
77,874 - -1.4
77,874 - -1.5
77,874 - -1.1
77,874 - +0.2
77,874 - -2.0
77,874 - -1.4
77,874 - -1.1
77,874 - +0.8
77,951 + GFF4438 0.12 +0.0
78,167 + GFF4438 0.36 -0.9
78,167 + GFF4438 0.36 +1.5
78,167 + GFF4438 0.36 -0.3
78,167 + GFF4438 0.36 +0.6
78,167 + GFF4438 0.36 -0.5
78,167 + GFF4438 0.36 -0.3
78,167 + GFF4438 0.36 -0.4
78,167 + GFF4438 0.36 +0.3
78,168 - GFF4438 0.36 +0.1
78,168 - GFF4438 0.36 -0.2
78,168 - GFF4438 0.36 +0.4
78,168 - GFF4438 0.36 +0.8
78,168 - GFF4438 0.36 +0.6
78,168 - GFF4438 0.36 -0.6
78,515 + GFF4438 0.75 -1.4
78,516 - GFF4438 0.75 -0.8
78,516 - GFF4438 0.75 -1.1
78,581 + GFF4438 0.82 +0.1
78,581 + GFF4438 0.82 +0.5
78,581 + GFF4438 0.82 -0.0
78,581 + GFF4438 0.82 -0.2
78,581 + GFF4438 0.82 -0.2
78,582 - GFF4438 0.82 -1.5
78,582 - GFF4438 0.82 -0.2
78,733 + -0.0
78,733 + +0.8
78,733 + -0.9
78,733 + -1.0
78,733 + -0.9
78,733 + -0.2
78,733 + -0.5
78,733 + -1.2
78,734 - -1.4
78,734 - +0.2
78,734 - -0.8
78,734 - -0.7

Or see this region's nucleotide sequence