Strain Fitness in Variovorax sp. SCN45 around GFF4000

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3999 and GFF4000 are separated by 206 nucleotidesGFF4000 and GFF4001 are separated by 106 nucleotides GFF3999 - GMP reductase (EC 1.7.1.7), at 199,625 to 200,602 GFF3999 GFF4000 - ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12), at 200,809 to 203,250 GFF4000 GFF4001 - FIG01199237: hypothetical protein, at 203,357 to 207,079 GFF4001 Position (kb) 200 201 202 203 204Strain fitness (log2 ratio) -3 -2 -1 0 1at 199.813 kb on - strand, within GFF3999at 199.813 kb on - strand, within GFF3999at 199.845 kb on + strand, within GFF3999at 199.845 kb on + strand, within GFF3999at 199.845 kb on + strand, within GFF3999at 199.846 kb on - strand, within GFF3999at 199.846 kb on - strand, within GFF3999at 199.846 kb on - strand, within GFF3999at 199.846 kb on - strand, within GFF3999at 199.846 kb on - strand, within GFF3999at 199.846 kb on - strand, within GFF3999at 199.846 kb on - strand, within GFF3999at 199.848 kb on + strand, within GFF3999at 199.848 kb on + strand, within GFF3999at 199.849 kb on - strand, within GFF3999at 199.849 kb on - strand, within GFF3999at 199.849 kb on - strand, within GFF3999at 199.849 kb on - strand, within GFF3999at 200.212 kb on - strand, within GFF3999at 200.268 kb on + strand, within GFF3999at 200.268 kb on + strand, within GFF3999at 200.268 kb on + strand, within GFF3999at 200.268 kb on + strand, within GFF3999at 200.268 kb on + strand, within GFF3999at 200.268 kb on + strand, within GFF3999at 200.269 kb on - strand, within GFF3999at 200.269 kb on - strand, within GFF3999at 200.269 kb on - strand, within GFF3999at 200.269 kb on - strand, within GFF3999at 200.269 kb on - strand, within GFF3999at 200.269 kb on - strand, within GFF3999at 200.269 kb on - strand, within GFF3999at 200.269 kb on - strand, within GFF3999at 200.313 kb on + strand, within GFF3999at 200.313 kb on + strand, within GFF3999at 200.314 kb on - strand, within GFF3999at 200.314 kb on - strand, within GFF3999at 200.415 kb on + strand, within GFF3999at 200.415 kb on + strand, within GFF3999at 200.415 kb on + strand, within GFF3999at 200.415 kb on + strand, within GFF3999at 200.415 kb on + strand, within GFF3999at 200.415 kb on + strand, within GFF3999at 200.415 kb on + strand, within GFF3999at 200.415 kb on + strand, within GFF3999at 200.415 kb on + strand, within GFF3999at 200.415 kb on + strand, within GFF3999at 200.416 kb on - strand, within GFF3999at 200.416 kb on - strand, within GFF3999at 200.416 kb on - strand, within GFF3999at 200.416 kb on - strand, within GFF3999at 200.416 kb on - strand, within GFF3999at 200.416 kb on - strand, within GFF3999at 200.416 kb on - strand, within GFF3999at 200.421 kb on + strand, within GFF3999at 200.421 kb on + strand, within GFF3999at 200.422 kb on - strand, within GFF3999at 200.422 kb on - strand, within GFF3999at 200.422 kb on - strand, within GFF3999at 200.422 kb on - strand, within GFF3999at 200.422 kb on - strand, within GFF3999at 200.586 kb on + strandat 200.586 kb on + strandat 200.587 kb on - strandat 200.587 kb on - strandat 200.587 kb on - strandat 200.735 kb on + strandat 200.772 kb on + strandat 200.772 kb on + strandat 200.772 kb on + strandat 200.772 kb on + strandat 200.772 kb on + strandat 200.773 kb on - strandat 200.783 kb on + strandat 200.784 kb on - strandat 201.376 kb on + strand, within GFF4000at 201.436 kb on + strand, within GFF4000at 201.475 kb on + strand, within GFF4000at 201.476 kb on - strand, within GFF4000at 201.476 kb on - strand, within GFF4000at 201.536 kb on - strand, within GFF4000at 201.637 kb on + strand, within GFF4000at 201.637 kb on + strand, within GFF4000at 201.637 kb on + strand, within GFF4000at 201.638 kb on - strand, within GFF4000at 201.725 kb on - strand, within GFF4000at 201.725 kb on - strand, within GFF4000at 201.733 kb on + strand, within GFF4000at 201.733 kb on + strand, within GFF4000at 201.733 kb on + strand, within GFF4000at 201.734 kb on - strand, within GFF4000at 201.838 kb on + strand, within GFF4000at 201.938 kb on - strand, within GFF4000at 201.938 kb on - strand, within GFF4000at 202.057 kb on + strand, within GFF4000at 202.058 kb on - strand, within GFF4000at 202.339 kb on + strand, within GFF4000at 202.339 kb on + strand, within GFF4000at 202.340 kb on - strand, within GFF4000at 202.768 kb on + strand, within GFF4000at 202.768 kb on + strand, within GFF4000at 202.768 kb on + strand, within GFF4000at 202.768 kb on + strand, within GFF4000at 202.768 kb on + strand, within GFF4000at 202.768 kb on + strand, within GFF4000at 202.768 kb on + strand, within GFF4000at 202.768 kb on + strand, within GFF4000at 202.769 kb on - strand, within GFF4000at 202.769 kb on - strand, within GFF4000at 202.769 kb on - strand, within GFF4000at 202.769 kb on - strand, within GFF4000at 202.769 kb on - strand, within GFF4000at 202.802 kb on - strand, within GFF4000at 202.948 kb on + strand, within GFF4000at 202.960 kb on + strand, within GFF4000at 202.961 kb on - strand, within GFF4000at 203.017 kb on + strandat 203.017 kb on + strandat 203.018 kb on - strandat 203.773 kb on + strand, within GFF4001at 203.774 kb on - strand, within GFF4001at 203.981 kb on + strand, within GFF4001at 203.981 kb on + strand, within GFF4001at 203.982 kb on - strand, within GFF4001at 204.021 kb on - strand, within GFF4001at 204.092 kb on + strand, within GFF4001at 204.093 kb on - strand, within GFF4001at 204.131 kb on + strand, within GFF4001at 204.131 kb on + strand, within GFF4001at 204.131 kb on + strand, within GFF4001at 204.131 kb on + strand, within GFF4001at 204.132 kb on - strand, within GFF4001at 204.132 kb on - strand, within GFF4001at 204.132 kb on - strand, within GFF4001

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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199,813 - GFF3999 0.19 +0.0
199,813 - GFF3999 0.19 -0.1
199,845 + GFF3999 0.22 -0.9
199,845 + GFF3999 0.22 +0.3
199,845 + GFF3999 0.22 -1.5
199,846 - GFF3999 0.23 -0.1
199,846 - GFF3999 0.23 +1.1
199,846 - GFF3999 0.23 +0.5
199,846 - GFF3999 0.23 -0.6
199,846 - GFF3999 0.23 -0.4
199,846 - GFF3999 0.23 -0.8
199,846 - GFF3999 0.23 -0.4
199,848 + GFF3999 0.23 -0.8
199,848 + GFF3999 0.23 +0.4
199,849 - GFF3999 0.23 -0.8
199,849 - GFF3999 0.23 -1.4
199,849 - GFF3999 0.23 -1.2
199,849 - GFF3999 0.23 +0.2
200,212 - GFF3999 0.60 +0.1
200,268 + GFF3999 0.66 -0.4
200,268 + GFF3999 0.66 -0.3
200,268 + GFF3999 0.66 -1.8
200,268 + GFF3999 0.66 -0.7
200,268 + GFF3999 0.66 -1.4
200,268 + GFF3999 0.66 +0.1
200,269 - GFF3999 0.66 +0.1
200,269 - GFF3999 0.66 -0.2
200,269 - GFF3999 0.66 +0.7
200,269 - GFF3999 0.66 +0.8
200,269 - GFF3999 0.66 -0.5
200,269 - GFF3999 0.66 -0.5
200,269 - GFF3999 0.66 -0.8
200,269 - GFF3999 0.66 -0.1
200,313 + GFF3999 0.70 -0.1
200,313 + GFF3999 0.70 -0.8
200,314 - GFF3999 0.70 +0.8
200,314 - GFF3999 0.70 -0.2
200,415 + GFF3999 0.81 +1.6
200,415 + GFF3999 0.81 -0.8
200,415 + GFF3999 0.81 -1.4
200,415 + GFF3999 0.81 -0.3
200,415 + GFF3999 0.81 -0.1
200,415 + GFF3999 0.81 -0.7
200,415 + GFF3999 0.81 +1.4
200,415 + GFF3999 0.81 +0.8
200,415 + GFF3999 0.81 -0.9
200,415 + GFF3999 0.81 -0.1
200,416 - GFF3999 0.81 +0.5
200,416 - GFF3999 0.81 -0.1
200,416 - GFF3999 0.81 -0.5
200,416 - GFF3999 0.81 -0.1
200,416 - GFF3999 0.81 -0.5
200,416 - GFF3999 0.81 +0.9
200,416 - GFF3999 0.81 -0.8
200,421 + GFF3999 0.81 -0.2
200,421 + GFF3999 0.81 +0.6
200,422 - GFF3999 0.81 -0.5
200,422 - GFF3999 0.81 -0.5
200,422 - GFF3999 0.81 -0.0
200,422 - GFF3999 0.81 -0.2
200,422 - GFF3999 0.81 +0.6
200,586 + +0.5
200,586 + +0.1
200,587 - +0.1
200,587 - -0.2
200,587 - -1.2
200,735 + -0.4
200,772 + +0.5
200,772 + +0.2
200,772 + +0.1
200,772 + -0.3
200,772 + +0.8
200,773 - -2.1
200,783 + -0.6
200,784 - -0.3
201,376 + GFF4000 0.23 -0.5
201,436 + GFF4000 0.26 -1.8
201,475 + GFF4000 0.27 -1.0
201,476 - GFF4000 0.27 -1.8
201,476 - GFF4000 0.27 -1.2
201,536 - GFF4000 0.30 -1.9
201,637 + GFF4000 0.34 +0.3
201,637 + GFF4000 0.34 -2.9
201,637 + GFF4000 0.34 -0.4
201,638 - GFF4000 0.34 -0.7
201,725 - GFF4000 0.38 -1.4
201,725 - GFF4000 0.38 -0.7
201,733 + GFF4000 0.38 -0.5
201,733 + GFF4000 0.38 -0.4
201,733 + GFF4000 0.38 -1.2
201,734 - GFF4000 0.38 -0.4
201,838 + GFF4000 0.42 -1.4
201,938 - GFF4000 0.46 +0.1
201,938 - GFF4000 0.46 -1.4
202,057 + GFF4000 0.51 -1.4
202,058 - GFF4000 0.51 +1.6
202,339 + GFF4000 0.63 -1.6
202,339 + GFF4000 0.63 +0.1
202,340 - GFF4000 0.63 -0.7
202,768 + GFF4000 0.80 -0.2
202,768 + GFF4000 0.80 +0.1
202,768 + GFF4000 0.80 -0.4
202,768 + GFF4000 0.80 +0.3
202,768 + GFF4000 0.80 +1.6
202,768 + GFF4000 0.80 -0.4
202,768 + GFF4000 0.80 -1.4
202,768 + GFF4000 0.80 -0.8
202,769 - GFF4000 0.80 -1.4
202,769 - GFF4000 0.80 -1.7
202,769 - GFF4000 0.80 -2.2
202,769 - GFF4000 0.80 -1.8
202,769 - GFF4000 0.80 -0.4
202,802 - GFF4000 0.82 +0.1
202,948 + GFF4000 0.88 +1.3
202,960 + GFF4000 0.88 -0.9
202,961 - GFF4000 0.88 -1.2
203,017 + -1.2
203,017 + -1.1
203,018 - -0.4
203,773 + GFF4001 0.11 -1.4
203,774 - GFF4001 0.11 +0.5
203,981 + GFF4001 0.17 -1.2
203,981 + GFF4001 0.17 -0.0
203,982 - GFF4001 0.17 -0.4
204,021 - GFF4001 0.18 -0.3
204,092 + GFF4001 0.20 +1.2
204,093 - GFF4001 0.20 -1.2
204,131 + GFF4001 0.21 -0.0
204,131 + GFF4001 0.21 -0.0
204,131 + GFF4001 0.21 -0.5
204,131 + GFF4001 0.21 -0.1
204,132 - GFF4001 0.21 +0.8
204,132 - GFF4001 0.21 -1.2
204,132 - GFF4001 0.21 -1.2

Or see this region's nucleotide sequence