Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3959 and GFF3960 are separated by 60 nucleotides GFF3960 and GFF3961 are separated by 248 nucleotides
GFF3959 - Uncharacterized integral membrane endopeptidase Bmul_2226, at 159,299 to 160,558
GFF3959
GFF3960 - 3'-to-5' oligoribonuclease (orn), at 160,619 to 161,215
GFF3960
GFF3961 - ATP-dependent RNA helicase NGO0650, at 161,464 to 163,347
GFF3961
Position (kb) 160
161
162 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 159.774 kb on + strand, within GFF3959 at 159.775 kb on - strand, within GFF3959 at 159.775 kb on - strand, within GFF3959 at 159.775 kb on - strand, within GFF3959 at 159.775 kb on - strand, within GFF3959 at 159.775 kb on - strand, within GFF3959 at 159.813 kb on + strand, within GFF3959 at 159.814 kb on - strand, within GFF3959 at 159.814 kb on - strand, within GFF3959 at 159.814 kb on - strand, within GFF3959 at 159.814 kb on - strand, within GFF3959 at 159.814 kb on - strand, within GFF3959 at 159.970 kb on - strand, within GFF3959 at 159.970 kb on - strand, within GFF3959 at 160.383 kb on + strand, within GFF3959 at 160.383 kb on + strand, within GFF3959 at 160.383 kb on + strand, within GFF3959 at 160.384 kb on - strand, within GFF3959 at 160.384 kb on - strand, within GFF3959 at 160.384 kb on - strand, within GFF3959 at 160.384 kb on - strand, within GFF3959 at 160.552 kb on - strand at 160.558 kb on + strand at 160.558 kb on + strand at 160.558 kb on + strand at 160.558 kb on + strand at 160.558 kb on + strand at 160.558 kb on + strand at 160.558 kb on + strand at 160.558 kb on + strand at 160.558 kb on + strand at 160.558 kb on + strand at 160.559 kb on - strand at 160.559 kb on - strand at 160.559 kb on - strand at 160.559 kb on - strand at 160.559 kb on - strand at 160.559 kb on - strand at 160.559 kb on - strand at 160.559 kb on - strand at 160.559 kb on - strand at 160.584 kb on - strand at 160.584 kb on - strand at 160.584 kb on - strand at 160.949 kb on + strand, within GFF3960 at 160.949 kb on + strand, within GFF3960 at 160.949 kb on + strand, within GFF3960 at 160.949 kb on + strand, within GFF3960 at 160.949 kb on + strand, within GFF3960 at 160.950 kb on - strand, within GFF3960 at 160.950 kb on - strand, within GFF3960 at 160.950 kb on - strand, within GFF3960 at 160.950 kb on - strand, within GFF3960 at 160.950 kb on - strand, within GFF3960 at 161.018 kb on + strand, within GFF3960 at 161.018 kb on + strand, within GFF3960 at 161.018 kb on + strand, within GFF3960 at 161.018 kb on + strand, within GFF3960 at 161.018 kb on + strand, within GFF3960 at 161.018 kb on + strand, within GFF3960 at 161.019 kb on - strand, within GFF3960 at 161.019 kb on - strand, within GFF3960 at 161.019 kb on - strand, within GFF3960 at 161.019 kb on - strand, within GFF3960 at 161.019 kb on - strand, within GFF3960 at 161.019 kb on - strand, within GFF3960 at 161.019 kb on - strand, within GFF3960 at 161.019 kb on - strand, within GFF3960 at 161.019 kb on - strand, within GFF3960 at 161.019 kb on - strand, within GFF3960 at 161.039 kb on + strand, within GFF3960 at 161.039 kb on + strand, within GFF3960 at 161.039 kb on + strand, within GFF3960 at 161.039 kb on + strand, within GFF3960 at 161.039 kb on + strand, within GFF3960 at 161.108 kb on + strand, within GFF3960 at 161.108 kb on + strand, within GFF3960 at 161.108 kb on + strand, within GFF3960 at 161.108 kb on + strand, within GFF3960 at 161.108 kb on + strand, within GFF3960 at 161.108 kb on + strand, within GFF3960 at 161.109 kb on - strand, within GFF3960 at 161.223 kb on + strand at 161.312 kb on + strand at 161.312 kb on + strand at 161.410 kb on + strand at 161.410 kb on + strand at 161.410 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 159,774 + GFF3959 0.38 -0.7 159,775 - GFF3959 0.38 +0.8 159,775 - GFF3959 0.38 -1.2 159,775 - GFF3959 0.38 +0.0 159,775 - GFF3959 0.38 -0.4 159,775 - GFF3959 0.38 +0.3 159,813 + GFF3959 0.41 -0.2 159,814 - GFF3959 0.41 +0.5 159,814 - GFF3959 0.41 -0.7 159,814 - GFF3959 0.41 -0.3 159,814 - GFF3959 0.41 -0.1 159,814 - GFF3959 0.41 -0.8 159,970 - GFF3959 0.53 +0.2 159,970 - GFF3959 0.53 +0.1 160,383 + GFF3959 0.86 +0.0 160,383 + GFF3959 0.86 +0.6 160,383 + GFF3959 0.86 +0.3 160,384 - GFF3959 0.86 -0.4 160,384 - GFF3959 0.86 -0.2 160,384 - GFF3959 0.86 -0.9 160,384 - GFF3959 0.86 -0.2 160,552 - -0.4 160,558 + -0.8 160,558 + +0.3 160,558 + -1.5 160,558 + +0.6 160,558 + -0.4 160,558 + +0.5 160,558 + +1.6 160,558 + +0.4 160,558 + +0.1 160,558 + +0.0 160,559 - -0.2 160,559 - -1.0 160,559 - +0.2 160,559 - -0.2 160,559 - -0.6 160,559 - -2.4 160,559 - +1.2 160,559 - +0.2 160,559 - -0.6 160,584 - +0.6 160,584 - -0.6 160,584 - -0.4 160,949 + GFF3960 0.55 +0.1 160,949 + GFF3960 0.55 -1.5 160,949 + GFF3960 0.55 -1.4 160,949 + GFF3960 0.55 -1.7 160,949 + GFF3960 0.55 +0.6 160,950 - GFF3960 0.55 -0.4 160,950 - GFF3960 0.55 -1.7 160,950 - GFF3960 0.55 -2.9 160,950 - GFF3960 0.55 -1.5 160,950 - GFF3960 0.55 -1.7 161,018 + GFF3960 0.67 -1.2 161,018 + GFF3960 0.67 -1.3 161,018 + GFF3960 0.67 -0.8 161,018 + GFF3960 0.67 -1.9 161,018 + GFF3960 0.67 -1.7 161,018 + GFF3960 0.67 -2.5 161,019 - GFF3960 0.67 +1.6 161,019 - GFF3960 0.67 -0.1 161,019 - GFF3960 0.67 -0.7 161,019 - GFF3960 0.67 +0.3 161,019 - GFF3960 0.67 -1.5 161,019 - GFF3960 0.67 -0.6 161,019 - GFF3960 0.67 -3.4 161,019 - GFF3960 0.67 -0.5 161,019 - GFF3960 0.67 -0.3 161,019 - GFF3960 0.67 -3.0 161,039 + GFF3960 0.70 -0.2 161,039 + GFF3960 0.70 -0.5 161,039 + GFF3960 0.70 +0.6 161,039 + GFF3960 0.70 -3.1 161,039 + GFF3960 0.70 -1.9 161,108 + GFF3960 0.82 -1.2 161,108 + GFF3960 0.82 -2.3 161,108 + GFF3960 0.82 -0.5 161,108 + GFF3960 0.82 -2.4 161,108 + GFF3960 0.82 -2.5 161,108 + GFF3960 0.82 +0.1 161,109 - GFF3960 0.82 -2.2 161,223 + -0.4 161,312 + +0.6 161,312 + -0.4 161,410 + -0.5 161,410 + -0.9 161,410 + -0.7
Or see this region's nucleotide sequence