Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3733 and GFF3734 overlap by 4 nucleotides GFF3734 and GFF3735 overlap by 4 nucleotides GFF3735 and GFF3736 are separated by 46 nucleotides GFF3736 and GFF3737 are separated by 85 nucleotides
GFF3733 - no description, at 230,703 to 231,599
GFF3733
GFF3734 - RNA:NAD 2'-phosphotransferase, at 231,596 to 232,132
GFF3734
GFF3735 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase (EC 2.1.1.198), at 232,129 to 233,076
GFF3735
GFF3736 - UPF0102 protein YraN, at 233,123 to 233,491
GFF3736
GFF3737 - DnaA initiator-associating protein DiaA, at 233,577 to 234,221
GFF3737
Position (kb) 232
233
234 Strain fitness (log2 ratio) -2
-1
0
1
2 at 231.191 kb on + strand, within GFF3733 at 231.192 kb on - strand, within GFF3733 at 231.192 kb on - strand, within GFF3733 at 231.192 kb on - strand, within GFF3733 at 231.192 kb on - strand, within GFF3733 at 231.224 kb on + strand, within GFF3733 at 231.498 kb on + strand, within GFF3733 at 231.499 kb on - strand, within GFF3733 at 231.499 kb on - strand, within GFF3733 at 231.629 kb on + strand at 231.629 kb on + strand at 231.629 kb on + strand at 231.629 kb on + strand at 231.629 kb on + strand at 231.630 kb on - strand at 231.630 kb on - strand at 231.630 kb on - strand at 231.630 kb on - strand at 231.630 kb on - strand at 231.785 kb on + strand, within GFF3734 at 231.785 kb on + strand, within GFF3734 at 231.785 kb on + strand, within GFF3734 at 231.785 kb on + strand, within GFF3734 at 232.172 kb on + strand at 232.172 kb on + strand at 232.172 kb on + strand at 232.172 kb on + strand at 232.172 kb on + strand at 232.172 kb on + strand at 232.172 kb on + strand at 232.173 kb on - strand at 232.173 kb on - strand at 232.198 kb on + strand at 232.199 kb on - strand at 232.199 kb on - strand at 232.428 kb on + strand, within GFF3735 at 232.754 kb on + strand, within GFF3735 at 232.754 kb on + strand, within GFF3735 at 232.985 kb on + strand at 232.985 kb on + strand at 232.985 kb on + strand at 232.986 kb on - strand at 232.986 kb on - strand at 232.986 kb on - strand at 232.986 kb on - strand at 232.986 kb on - strand at 232.986 kb on - strand at 233.223 kb on - strand, within GFF3736 at 233.393 kb on + strand, within GFF3736 at 233.393 kb on + strand, within GFF3736 at 233.394 kb on - strand, within GFF3736 at 233.564 kb on - strand at 233.564 kb on - strand at 233.564 kb on - strand at 233.628 kb on + strand at 233.629 kb on - strand at 233.629 kb on - strand at 233.629 kb on - strand at 233.629 kb on - strand at 233.629 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 231,191 + GFF3733 0.54 -1.1 231,192 - GFF3733 0.55 -0.5 231,192 - GFF3733 0.55 +0.1 231,192 - GFF3733 0.55 +0.6 231,192 - GFF3733 0.55 -0.5 231,224 + GFF3733 0.58 +0.3 231,498 + GFF3733 0.89 +0.1 231,499 - GFF3733 0.89 -0.3 231,499 - GFF3733 0.89 +0.8 231,629 + -0.6 231,629 + -0.1 231,629 + +0.9 231,629 + +0.4 231,629 + +0.4 231,630 - +0.7 231,630 - +0.0 231,630 - -0.2 231,630 - -1.9 231,630 - -0.7 231,785 + GFF3734 0.35 +0.3 231,785 + GFF3734 0.35 -0.3 231,785 + GFF3734 0.35 +0.1 231,785 + GFF3734 0.35 -0.3 232,172 + -1.6 232,172 + -0.5 232,172 + -0.5 232,172 + -2.2 232,172 + -0.1 232,172 + +1.8 232,172 + -0.2 232,173 - +0.9 232,173 - +0.2 232,198 + +0.0 232,199 - -0.4 232,199 - +0.2 232,428 + GFF3735 0.32 -0.5 232,754 + GFF3735 0.66 -1.1 232,754 + GFF3735 0.66 -0.8 232,985 + -0.3 232,985 + -0.6 232,985 + +0.2 232,986 - -0.4 232,986 - -1.0 232,986 - -1.1 232,986 - +0.8 232,986 - -0.5 232,986 - -0.6 233,223 - GFF3736 0.27 +0.2 233,393 + GFF3736 0.73 +0.8 233,393 + GFF3736 0.73 +0.2 233,394 - GFF3736 0.73 +0.7 233,564 - -0.3 233,564 - -0.0 233,564 - -0.5 233,628 + +2.2 233,629 - -0.3 233,629 - -1.1 233,629 - -0.2 233,629 - -0.6 233,629 - -0.3
Or see this region's nucleotide sequence