Strain Fitness in Variovorax sp. SCN45 around GFF372

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF370 and GFF371 are separated by 15 nucleotidesGFF371 and GFF372 are separated by 5 nucleotidesGFF372 and GFF373 are separated by 45 nucleotidesGFF373 and GFF374 are separated by 10 nucleotides GFF370 - 23S rRNA (uridine(2552)-2'-O)-methyltransferase (EC 2.1.1.166), at 401,901 to 402,662 GFF370 GFF371 - RNA-binding protein YhbY, at 402,678 to 403,082 GFF371 GFF372 - PMID: 11481431, at 403,088 to 403,843 GFF372 GFF373 - Probable transmembrane protein, at 403,889 to 404,305 GFF373 GFF374 - Transcription elongation factor GreA, at 404,316 to 404,792 GFF374 Position (kb) 403 404Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 402.364 kb on + strand, within GFF370at 402.364 kb on + strand, within GFF370at 402.365 kb on - strand, within GFF370at 402.457 kb on + strand, within GFF370at 402.458 kb on - strand, within GFF370at 402.458 kb on - strand, within GFF370at 402.458 kb on - strand, within GFF370at 402.458 kb on - strand, within GFF370at 402.502 kb on + strand, within GFF370at 402.502 kb on + strand, within GFF370at 402.502 kb on + strand, within GFF370at 402.502 kb on + strand, within GFF370at 402.502 kb on + strand, within GFF370at 402.502 kb on + strand, within GFF370at 402.503 kb on - strand, within GFF370at 402.503 kb on - strand, within GFF370at 402.503 kb on - strand, within GFF370at 402.503 kb on - strand, within GFF370at 402.503 kb on - strand, within GFF370at 402.503 kb on - strand, within GFF370at 402.503 kb on - strand, within GFF370at 402.503 kb on - strand, within GFF370at 402.503 kb on - strand, within GFF370at 402.503 kb on - strand, within GFF370at 402.503 kb on - strand, within GFF370at 402.503 kb on - strand, within GFF370at 402.515 kb on + strand, within GFF370at 402.515 kb on + strand, within GFF370at 402.515 kb on + strand, within GFF370at 402.515 kb on + strand, within GFF370at 402.516 kb on - strand, within GFF370at 402.516 kb on - strand, within GFF370at 402.583 kb on + strand, within GFF370at 402.583 kb on + strand, within GFF370at 402.584 kb on - strand, within GFF370at 402.593 kb on + strandat 402.593 kb on + strandat 402.594 kb on - strandat 402.620 kb on + strandat 402.620 kb on + strandat 402.621 kb on - strandat 402.698 kb on + strandat 402.698 kb on + strandat 402.699 kb on - strandat 402.709 kb on + strandat 402.942 kb on + strand, within GFF371at 402.942 kb on + strand, within GFF371at 402.942 kb on + strand, within GFF371at 402.942 kb on + strand, within GFF371at 402.943 kb on - strand, within GFF371at 403.114 kb on + strandat 403.114 kb on + strandat 403.115 kb on - strandat 403.115 kb on - strandat 403.143 kb on - strandat 403.154 kb on + strandat 403.155 kb on - strandat 403.169 kb on + strand, within GFF372at 403.170 kb on - strand, within GFF372at 403.346 kb on + strand, within GFF372at 403.346 kb on + strand, within GFF372at 403.346 kb on + strand, within GFF372at 403.347 kb on - strand, within GFF372at 403.347 kb on - strand, within GFF372at 403.347 kb on - strand, within GFF372at 403.361 kb on - strand, within GFF372at 403.451 kb on + strand, within GFF372at 403.499 kb on + strand, within GFF372at 403.500 kb on - strand, within GFF372at 403.539 kb on - strand, within GFF372at 403.575 kb on - strand, within GFF372at 403.592 kb on + strand, within GFF372at 403.592 kb on + strand, within GFF372at 403.593 kb on - strand, within GFF372at 403.593 kb on - strand, within GFF372at 403.631 kb on + strand, within GFF372at 403.631 kb on + strand, within GFF372at 403.664 kb on + strand, within GFF372at 403.664 kb on + strand, within GFF372at 403.665 kb on - strand, within GFF372at 403.665 kb on - strand, within GFF372at 403.665 kb on - strand, within GFF372at 403.665 kb on - strand, within GFF372at 403.694 kb on + strand, within GFF372at 403.694 kb on + strand, within GFF372at 403.694 kb on + strand, within GFF372at 403.694 kb on + strand, within GFF372at 403.694 kb on + strand, within GFF372at 403.695 kb on - strand, within GFF372at 403.695 kb on - strand, within GFF372at 403.695 kb on - strand, within GFF372at 403.695 kb on - strand, within GFF372at 403.829 kb on + strandat 403.829 kb on + strandat 403.886 kb on - strandat 403.886 kb on - strandat 403.886 kb on - strandat 403.953 kb on + strand, within GFF373at 403.953 kb on + strand, within GFF373at 403.953 kb on + strand, within GFF373at 403.953 kb on + strand, within GFF373at 403.953 kb on + strand, within GFF373at 403.953 kb on + strand, within GFF373at 403.953 kb on + strand, within GFF373at 403.953 kb on + strand, within GFF373at 403.953 kb on + strand, within GFF373at 403.953 kb on + strand, within GFF373at 403.953 kb on + strand, within GFF373at 403.953 kb on + strand, within GFF373at 403.954 kb on - strand, within GFF373at 403.954 kb on - strand, within GFF373at 403.954 kb on - strand, within GFF373at 403.954 kb on - strand, within GFF373at 403.954 kb on - strand, within GFF373at 403.954 kb on - strand, within GFF373at 403.954 kb on - strand, within GFF373at 403.954 kb on - strand, within GFF373at 403.954 kb on - strand, within GFF373at 403.954 kb on - strand, within GFF373at 403.954 kb on - strand, within GFF373at 403.954 kb on - strand, within GFF373at 403.954 kb on - strand, within GFF373at 403.954 kb on - strand, within GFF373at 404.022 kb on + strand, within GFF373at 404.022 kb on + strand, within GFF373at 404.022 kb on + strand, within GFF373at 404.022 kb on + strand, within GFF373at 404.022 kb on + strand, within GFF373at 404.022 kb on + strand, within GFF373at 404.022 kb on + strand, within GFF373at 404.022 kb on + strand, within GFF373at 404.022 kb on + strand, within GFF373at 404.023 kb on - strand, within GFF373at 404.023 kb on - strand, within GFF373at 404.323 kb on + strandat 404.323 kb on + strandat 404.323 kb on + strandat 404.324 kb on - strandat 404.324 kb on - strandat 404.344 kb on + strandat 404.470 kb on - strand, within GFF374at 404.470 kb on - strand, within GFF374at 404.479 kb on + strand, within GFF374at 404.479 kb on + strand, within GFF374at 404.479 kb on + strand, within GFF374at 404.650 kb on + strand, within GFF374at 404.650 kb on + strand, within GFF374at 404.651 kb on - strand, within GFF374at 404.808 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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402,364 + GFF370 0.61 -2.9
402,364 + GFF370 0.61 +0.8
402,365 - GFF370 0.61 +0.1
402,457 + GFF370 0.73 +0.7
402,458 - GFF370 0.73 -1.6
402,458 - GFF370 0.73 -0.8
402,458 - GFF370 0.73 +0.2
402,458 - GFF370 0.73 -1.1
402,502 + GFF370 0.79 -0.7
402,502 + GFF370 0.79 -1.1
402,502 + GFF370 0.79 -1.8
402,502 + GFF370 0.79 -0.9
402,502 + GFF370 0.79 -1.7
402,502 + GFF370 0.79 +0.4
402,503 - GFF370 0.79 -2.2
402,503 - GFF370 0.79 -2.2
402,503 - GFF370 0.79 +0.4
402,503 - GFF370 0.79 -0.4
402,503 - GFF370 0.79 -0.6
402,503 - GFF370 0.79 -0.7
402,503 - GFF370 0.79 -0.7
402,503 - GFF370 0.79 -0.7
402,503 - GFF370 0.79 -0.9
402,503 - GFF370 0.79 -0.4
402,503 - GFF370 0.79 -0.3
402,503 - GFF370 0.79 -0.4
402,515 + GFF370 0.81 -1.7
402,515 + GFF370 0.81 -0.2
402,515 + GFF370 0.81 +0.6
402,515 + GFF370 0.81 +0.8
402,516 - GFF370 0.81 -0.4
402,516 - GFF370 0.81 -2.2
402,583 + GFF370 0.90 -0.4
402,583 + GFF370 0.90 -0.7
402,584 - GFF370 0.90 -0.5
402,593 + -1.2
402,593 + +0.3
402,594 - +1.4
402,620 + -1.2
402,620 + -1.9
402,621 - +0.0
402,698 + -0.5
402,698 + -0.6
402,699 - -1.6
402,709 + -2.1
402,942 + GFF371 0.65 -1.3
402,942 + GFF371 0.65 -2.1
402,942 + GFF371 0.65 -0.7
402,942 + GFF371 0.65 -2.2
402,943 - GFF371 0.65 -2.4
403,114 + +0.4
403,114 + -1.8
403,115 - -1.8
403,115 - -1.2
403,143 - -0.4
403,154 + -2.1
403,155 - -0.6
403,169 + GFF372 0.11 -1.8
403,170 - GFF372 0.11 -0.9
403,346 + GFF372 0.34 -0.9
403,346 + GFF372 0.34 -3.8
403,346 + GFF372 0.34 -0.5
403,347 - GFF372 0.34 -0.4
403,347 - GFF372 0.34 -0.8
403,347 - GFF372 0.34 -1.3
403,361 - GFF372 0.36 -1.2
403,451 + GFF372 0.48 +0.7
403,499 + GFF372 0.54 -0.2
403,500 - GFF372 0.54 -0.9
403,539 - GFF372 0.60 -1.2
403,575 - GFF372 0.64 -1.8
403,592 + GFF372 0.67 -1.5
403,592 + GFF372 0.67 -1.2
403,593 - GFF372 0.67 -1.3
403,593 - GFF372 0.67 -0.9
403,631 + GFF372 0.72 -1.7
403,631 + GFF372 0.72 -0.7
403,664 + GFF372 0.76 -1.4
403,664 + GFF372 0.76 -0.7
403,665 - GFF372 0.76 -1.1
403,665 - GFF372 0.76 -0.9
403,665 - GFF372 0.76 -2.1
403,665 - GFF372 0.76 -3.8
403,694 + GFF372 0.80 -3.3
403,694 + GFF372 0.80 -1.9
403,694 + GFF372 0.80 +0.1
403,694 + GFF372 0.80 -0.8
403,694 + GFF372 0.80 -0.6
403,695 - GFF372 0.80 -1.9
403,695 - GFF372 0.80 -1.6
403,695 - GFF372 0.80 -0.6
403,695 - GFF372 0.80 -1.9
403,829 + -0.6
403,829 + +1.4
403,886 - +0.6
403,886 - -0.7
403,886 - -0.1
403,953 + GFF373 0.15 +0.1
403,953 + GFF373 0.15 -1.6
403,953 + GFF373 0.15 -0.1
403,953 + GFF373 0.15 -0.4
403,953 + GFF373 0.15 -0.3
403,953 + GFF373 0.15 +0.5
403,953 + GFF373 0.15 -1.2
403,953 + GFF373 0.15 -0.7
403,953 + GFF373 0.15 +0.0
403,953 + GFF373 0.15 +1.0
403,953 + GFF373 0.15 -0.4
403,953 + GFF373 0.15 -0.9
403,954 - GFF373 0.16 -0.8
403,954 - GFF373 0.16 -1.5
403,954 - GFF373 0.16 +1.0
403,954 - GFF373 0.16 -1.5
403,954 - GFF373 0.16 +0.7
403,954 - GFF373 0.16 +0.6
403,954 - GFF373 0.16 +0.1
403,954 - GFF373 0.16 +1.2
403,954 - GFF373 0.16 +0.4
403,954 - GFF373 0.16 -1.1
403,954 - GFF373 0.16 +0.6
403,954 - GFF373 0.16 -0.3
403,954 - GFF373 0.16 -0.3
403,954 - GFF373 0.16 -0.8
404,022 + GFF373 0.32 -0.8
404,022 + GFF373 0.32 -0.9
404,022 + GFF373 0.32 -0.3
404,022 + GFF373 0.32 -1.6
404,022 + GFF373 0.32 +0.4
404,022 + GFF373 0.32 -1.0
404,022 + GFF373 0.32 -1.1
404,022 + GFF373 0.32 -1.2
404,022 + GFF373 0.32 +0.2
404,023 - GFF373 0.32 -0.1
404,023 - GFF373 0.32 +0.2
404,323 + -0.3
404,323 + -0.6
404,323 + -1.2
404,324 - -0.2
404,324 - -0.8
404,344 + -0.5
404,470 - GFF374 0.32 -1.2
404,470 - GFF374 0.32 -0.6
404,479 + GFF374 0.34 -0.3
404,479 + GFF374 0.34 -0.0
404,479 + GFF374 0.34 -0.8
404,650 + GFF374 0.70 -0.5
404,650 + GFF374 0.70 -0.3
404,651 - GFF374 0.70 -0.6
404,808 + -0.6

Or see this region's nucleotide sequence