Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3709 and GFF3710 are separated by 58 nucleotides GFF3710 and GFF3711 are separated by 14 nucleotides GFF3711 and GFF3712 are separated by 22 nucleotides GFF3712 and GFF3713 are separated by 72 nucleotides
GFF3709 - ABC transporter, substrate-binding protein (cluster 11, riboflavin/purine nucleoside/unknown), at 209,362 to 210,471
GFF3709
GFF3710 - Lactoylglutathione lyase and related lyases, at 210,530 to 210,916
GFF3710
GFF3711 - oxidoreductase, 2OG-Fe(II) oxygenase family, at 210,931 to 211,932
GFF3711
GFF3712 - no description, at 211,955 to 212,086
GFF3712
GFF3713 - Transcriptional regulator RutR of pyrimidine catabolism (TetR family), at 212,159 to 212,866
GFF3713
Position (kb) 210
211
212 Strain fitness (log2 ratio) -1
0
1 at 210.023 kb on + strand, within GFF3709 at 210.023 kb on + strand, within GFF3709 at 210.024 kb on - strand, within GFF3709 at 210.047 kb on + strand, within GFF3709 at 210.110 kb on + strand, within GFF3709 at 210.332 kb on + strand, within GFF3709 at 210.500 kb on + strand at 210.501 kb on - strand at 210.531 kb on + strand at 210.532 kb on - strand at 210.597 kb on + strand, within GFF3710 at 210.597 kb on + strand, within GFF3710 at 210.597 kb on + strand, within GFF3710 at 210.597 kb on + strand, within GFF3710 at 210.598 kb on - strand, within GFF3710 at 210.598 kb on - strand, within GFF3710 at 210.598 kb on - strand, within GFF3710 at 210.598 kb on - strand, within GFF3710 at 210.601 kb on - strand, within GFF3710 at 210.610 kb on - strand, within GFF3710 at 210.750 kb on + strand, within GFF3710 at 210.750 kb on + strand, within GFF3710 at 210.751 kb on - strand, within GFF3710 at 210.900 kb on + strand at 210.901 kb on - strand at 210.901 kb on - strand at 210.901 kb on - strand at 211.014 kb on - strand at 211.070 kb on + strand, within GFF3711 at 211.070 kb on + strand, within GFF3711 at 211.494 kb on - strand, within GFF3711 at 211.502 kb on + strand, within GFF3711 at 211.502 kb on + strand, within GFF3711 at 211.502 kb on + strand, within GFF3711 at 211.781 kb on - strand, within GFF3711 at 211.892 kb on + strand at 212.105 kb on + strand at 212.106 kb on - strand at 212.396 kb on + strand, within GFF3713 at 212.396 kb on + strand, within GFF3713 at 212.397 kb on - strand, within GFF3713 at 212.397 kb on - strand, within GFF3713 at 212.399 kb on + strand, within GFF3713 at 212.423 kb on + strand, within GFF3713 at 212.423 kb on + strand, within GFF3713 at 212.423 kb on + strand, within GFF3713 at 212.424 kb on - strand, within GFF3713 at 212.516 kb on + strand, within GFF3713 at 212.517 kb on - strand, within GFF3713 at 212.744 kb on + strand, within GFF3713 at 212.744 kb on + strand, within GFF3713
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 210,023 + GFF3709 0.60 -0.1 210,023 + GFF3709 0.60 -0.9 210,024 - GFF3709 0.60 -1.1 210,047 + GFF3709 0.62 -0.6 210,110 + GFF3709 0.67 -0.2 210,332 + GFF3709 0.87 +0.3 210,500 + +0.3 210,501 - -0.3 210,531 + -1.3 210,532 - -0.4 210,597 + GFF3710 0.17 -0.3 210,597 + GFF3710 0.17 -0.2 210,597 + GFF3710 0.17 -1.0 210,597 + GFF3710 0.17 +1.4 210,598 - GFF3710 0.18 -0.2 210,598 - GFF3710 0.18 -0.3 210,598 - GFF3710 0.18 +0.5 210,598 - GFF3710 0.18 +0.2 210,601 - GFF3710 0.18 +0.6 210,610 - GFF3710 0.21 +0.6 210,750 + GFF3710 0.57 -1.2 210,750 + GFF3710 0.57 -0.0 210,751 - GFF3710 0.57 +0.6 210,900 + +0.5 210,901 - +0.2 210,901 - -1.2 210,901 - -1.1 211,014 - -1.0 211,070 + GFF3711 0.14 -0.2 211,070 + GFF3711 0.14 -0.5 211,494 - GFF3711 0.56 -0.7 211,502 + GFF3711 0.57 -1.0 211,502 + GFF3711 0.57 -0.5 211,502 + GFF3711 0.57 -1.0 211,781 - GFF3711 0.85 -0.7 211,892 + -1.0 212,105 + -0.4 212,106 - +0.4 212,396 + GFF3713 0.33 +0.4 212,396 + GFF3713 0.33 -0.9 212,397 - GFF3713 0.34 -0.8 212,397 - GFF3713 0.34 -0.2 212,399 + GFF3713 0.34 +0.1 212,423 + GFF3713 0.37 +1.1 212,423 + GFF3713 0.37 +0.2 212,423 + GFF3713 0.37 -0.5 212,424 - GFF3713 0.37 -0.7 212,516 + GFF3713 0.50 -0.1 212,517 - GFF3713 0.51 +0.2 212,744 + GFF3713 0.83 -0.0 212,744 + GFF3713 0.83 -0.8
Or see this region's nucleotide sequence