Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF369 and GFF370 are separated by 167 nucleotides GFF370 and GFF371 are separated by 15 nucleotides GFF371 and GFF372 are separated by 5 nucleotides GFF372 and GFF373 are separated by 45 nucleotides
GFF369 - Cell division-associated, ATP-dependent zinc metalloprotease FtsH, at 399,817 to 401,733
GFF369
GFF370 - 23S rRNA (uridine(2552)-2'-O)-methyltransferase (EC 2.1.1.166), at 401,901 to 402,662
GFF370
GFF371 - RNA-binding protein YhbY, at 402,678 to 403,082
GFF371
GFF372 - PMID: 11481431, at 403,088 to 403,843
GFF372
GFF373 - Probable transmembrane protein, at 403,889 to 404,305
GFF373
Position (kb) 402
403
404 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 401.775 kb on - strand at 401.775 kb on - strand at 401.775 kb on - strand at 401.854 kb on - strand at 401.854 kb on - strand at 401.879 kb on - strand at 401.900 kb on - strand at 401.900 kb on - strand at 401.900 kb on - strand at 401.900 kb on - strand at 401.900 kb on - strand at 401.900 kb on - strand at 401.900 kb on - strand at 401.900 kb on - strand at 401.900 kb on - strand at 401.900 kb on - strand at 401.900 kb on - strand at 401.900 kb on - strand at 401.910 kb on - strand at 401.910 kb on - strand at 401.910 kb on - strand at 401.923 kb on - strand at 401.923 kb on - strand at 401.923 kb on - strand at 401.923 kb on - strand at 401.923 kb on - strand at 402.364 kb on + strand, within GFF370 at 402.364 kb on + strand, within GFF370 at 402.365 kb on - strand, within GFF370 at 402.457 kb on + strand, within GFF370 at 402.458 kb on - strand, within GFF370 at 402.458 kb on - strand, within GFF370 at 402.458 kb on - strand, within GFF370 at 402.458 kb on - strand, within GFF370 at 402.502 kb on + strand, within GFF370 at 402.502 kb on + strand, within GFF370 at 402.502 kb on + strand, within GFF370 at 402.502 kb on + strand, within GFF370 at 402.502 kb on + strand, within GFF370 at 402.502 kb on + strand, within GFF370 at 402.503 kb on - strand, within GFF370 at 402.503 kb on - strand, within GFF370 at 402.503 kb on - strand, within GFF370 at 402.503 kb on - strand, within GFF370 at 402.503 kb on - strand, within GFF370 at 402.503 kb on - strand, within GFF370 at 402.503 kb on - strand, within GFF370 at 402.503 kb on - strand, within GFF370 at 402.503 kb on - strand, within GFF370 at 402.503 kb on - strand, within GFF370 at 402.503 kb on - strand, within GFF370 at 402.503 kb on - strand, within GFF370 at 402.515 kb on + strand, within GFF370 at 402.515 kb on + strand, within GFF370 at 402.515 kb on + strand, within GFF370 at 402.515 kb on + strand, within GFF370 at 402.516 kb on - strand, within GFF370 at 402.516 kb on - strand, within GFF370 at 402.583 kb on + strand, within GFF370 at 402.583 kb on + strand, within GFF370 at 402.584 kb on - strand, within GFF370 at 402.593 kb on + strand at 402.593 kb on + strand at 402.594 kb on - strand at 402.620 kb on + strand at 402.620 kb on + strand at 402.621 kb on - strand at 402.698 kb on + strand at 402.698 kb on + strand at 402.699 kb on - strand at 402.709 kb on + strand at 402.942 kb on + strand, within GFF371 at 402.942 kb on + strand, within GFF371 at 402.942 kb on + strand, within GFF371 at 402.942 kb on + strand, within GFF371 at 402.943 kb on - strand, within GFF371 at 403.114 kb on + strand at 403.114 kb on + strand at 403.115 kb on - strand at 403.115 kb on - strand at 403.143 kb on - strand at 403.154 kb on + strand at 403.155 kb on - strand at 403.169 kb on + strand, within GFF372 at 403.170 kb on - strand, within GFF372 at 403.346 kb on + strand, within GFF372 at 403.346 kb on + strand, within GFF372 at 403.346 kb on + strand, within GFF372 at 403.347 kb on - strand, within GFF372 at 403.347 kb on - strand, within GFF372 at 403.347 kb on - strand, within GFF372 at 403.361 kb on - strand, within GFF372 at 403.451 kb on + strand, within GFF372 at 403.499 kb on + strand, within GFF372 at 403.500 kb on - strand, within GFF372 at 403.539 kb on - strand, within GFF372 at 403.575 kb on - strand, within GFF372 at 403.592 kb on + strand, within GFF372 at 403.592 kb on + strand, within GFF372 at 403.593 kb on - strand, within GFF372 at 403.593 kb on - strand, within GFF372 at 403.631 kb on + strand, within GFF372 at 403.631 kb on + strand, within GFF372 at 403.664 kb on + strand, within GFF372 at 403.664 kb on + strand, within GFF372 at 403.665 kb on - strand, within GFF372 at 403.665 kb on - strand, within GFF372 at 403.665 kb on - strand, within GFF372 at 403.665 kb on - strand, within GFF372 at 403.694 kb on + strand, within GFF372 at 403.694 kb on + strand, within GFF372 at 403.694 kb on + strand, within GFF372 at 403.694 kb on + strand, within GFF372 at 403.694 kb on + strand, within GFF372 at 403.695 kb on - strand, within GFF372 at 403.695 kb on - strand, within GFF372 at 403.695 kb on - strand, within GFF372 at 403.695 kb on - strand, within GFF372 at 403.829 kb on + strand at 403.829 kb on + strand at 403.886 kb on - strand at 403.886 kb on - strand at 403.886 kb on - strand at 403.953 kb on + strand, within GFF373 at 403.953 kb on + strand, within GFF373 at 403.953 kb on + strand, within GFF373 at 403.953 kb on + strand, within GFF373 at 403.953 kb on + strand, within GFF373 at 403.953 kb on + strand, within GFF373 at 403.953 kb on + strand, within GFF373 at 403.953 kb on + strand, within GFF373 at 403.953 kb on + strand, within GFF373 at 403.953 kb on + strand, within GFF373 at 403.953 kb on + strand, within GFF373 at 403.953 kb on + strand, within GFF373 at 403.954 kb on - strand, within GFF373 at 403.954 kb on - strand, within GFF373 at 403.954 kb on - strand, within GFF373 at 403.954 kb on - strand, within GFF373 at 403.954 kb on - strand, within GFF373 at 403.954 kb on - strand, within GFF373 at 403.954 kb on - strand, within GFF373 at 403.954 kb on - strand, within GFF373 at 403.954 kb on - strand, within GFF373 at 403.954 kb on - strand, within GFF373 at 403.954 kb on - strand, within GFF373 at 403.954 kb on - strand, within GFF373 at 403.954 kb on - strand, within GFF373 at 403.954 kb on - strand, within GFF373 at 404.022 kb on + strand, within GFF373 at 404.022 kb on + strand, within GFF373 at 404.022 kb on + strand, within GFF373 at 404.022 kb on + strand, within GFF373 at 404.022 kb on + strand, within GFF373 at 404.022 kb on + strand, within GFF373 at 404.022 kb on + strand, within GFF373 at 404.022 kb on + strand, within GFF373 at 404.022 kb on + strand, within GFF373 at 404.023 kb on - strand, within GFF373 at 404.023 kb on - strand, within GFF373
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 401,775 - +0.7 401,775 - -1.2 401,775 - -0.2 401,854 - +0.8 401,854 - -0.1 401,879 - -0.2 401,900 - -1.6 401,900 - +0.0 401,900 - -0.7 401,900 - -1.2 401,900 - -0.6 401,900 - -0.3 401,900 - -0.6 401,900 - +1.5 401,900 - -0.9 401,900 - -0.5 401,900 - -0.6 401,900 - -0.9 401,910 - +0.4 401,910 - -0.8 401,910 - -0.0 401,923 - -0.8 401,923 - +0.1 401,923 - -1.4 401,923 - +0.1 401,923 - -0.4 402,364 + GFF370 0.61 -2.9 402,364 + GFF370 0.61 +0.8 402,365 - GFF370 0.61 +0.1 402,457 + GFF370 0.73 +0.7 402,458 - GFF370 0.73 -1.6 402,458 - GFF370 0.73 -0.8 402,458 - GFF370 0.73 +0.2 402,458 - GFF370 0.73 -1.1 402,502 + GFF370 0.79 -0.7 402,502 + GFF370 0.79 -1.1 402,502 + GFF370 0.79 -1.8 402,502 + GFF370 0.79 -0.9 402,502 + GFF370 0.79 -1.7 402,502 + GFF370 0.79 +0.4 402,503 - GFF370 0.79 -2.2 402,503 - GFF370 0.79 -2.2 402,503 - GFF370 0.79 +0.4 402,503 - GFF370 0.79 -0.4 402,503 - GFF370 0.79 -0.6 402,503 - GFF370 0.79 -0.7 402,503 - GFF370 0.79 -0.7 402,503 - GFF370 0.79 -0.7 402,503 - GFF370 0.79 -0.9 402,503 - GFF370 0.79 -0.4 402,503 - GFF370 0.79 -0.3 402,503 - GFF370 0.79 -0.4 402,515 + GFF370 0.81 -1.7 402,515 + GFF370 0.81 -0.2 402,515 + GFF370 0.81 +0.6 402,515 + GFF370 0.81 +0.8 402,516 - GFF370 0.81 -0.4 402,516 - GFF370 0.81 -2.2 402,583 + GFF370 0.90 -0.4 402,583 + GFF370 0.90 -0.7 402,584 - GFF370 0.90 -0.5 402,593 + -1.2 402,593 + +0.3 402,594 - +1.4 402,620 + -1.2 402,620 + -1.9 402,621 - +0.0 402,698 + -0.5 402,698 + -0.6 402,699 - -1.6 402,709 + -2.1 402,942 + GFF371 0.65 -1.3 402,942 + GFF371 0.65 -2.1 402,942 + GFF371 0.65 -0.7 402,942 + GFF371 0.65 -2.2 402,943 - GFF371 0.65 -2.4 403,114 + +0.4 403,114 + -1.8 403,115 - -1.8 403,115 - -1.2 403,143 - -0.4 403,154 + -2.1 403,155 - -0.6 403,169 + GFF372 0.11 -1.8 403,170 - GFF372 0.11 -0.9 403,346 + GFF372 0.34 -0.9 403,346 + GFF372 0.34 -3.8 403,346 + GFF372 0.34 -0.5 403,347 - GFF372 0.34 -0.4 403,347 - GFF372 0.34 -0.8 403,347 - GFF372 0.34 -1.3 403,361 - GFF372 0.36 -1.2 403,451 + GFF372 0.48 +0.7 403,499 + GFF372 0.54 -0.2 403,500 - GFF372 0.54 -0.9 403,539 - GFF372 0.60 -1.2 403,575 - GFF372 0.64 -1.8 403,592 + GFF372 0.67 -1.5 403,592 + GFF372 0.67 -1.2 403,593 - GFF372 0.67 -1.3 403,593 - GFF372 0.67 -0.9 403,631 + GFF372 0.72 -1.7 403,631 + GFF372 0.72 -0.7 403,664 + GFF372 0.76 -1.4 403,664 + GFF372 0.76 -0.7 403,665 - GFF372 0.76 -1.1 403,665 - GFF372 0.76 -0.9 403,665 - GFF372 0.76 -2.1 403,665 - GFF372 0.76 -3.8 403,694 + GFF372 0.80 -3.3 403,694 + GFF372 0.80 -1.9 403,694 + GFF372 0.80 +0.1 403,694 + GFF372 0.80 -0.8 403,694 + GFF372 0.80 -0.6 403,695 - GFF372 0.80 -1.9 403,695 - GFF372 0.80 -1.6 403,695 - GFF372 0.80 -0.6 403,695 - GFF372 0.80 -1.9 403,829 + -0.6 403,829 + +1.4 403,886 - +0.6 403,886 - -0.7 403,886 - -0.1 403,953 + GFF373 0.15 +0.1 403,953 + GFF373 0.15 -1.6 403,953 + GFF373 0.15 -0.1 403,953 + GFF373 0.15 -0.4 403,953 + GFF373 0.15 -0.3 403,953 + GFF373 0.15 +0.5 403,953 + GFF373 0.15 -1.2 403,953 + GFF373 0.15 -0.7 403,953 + GFF373 0.15 +0.0 403,953 + GFF373 0.15 +1.0 403,953 + GFF373 0.15 -0.4 403,953 + GFF373 0.15 -0.9 403,954 - GFF373 0.16 -0.8 403,954 - GFF373 0.16 -1.5 403,954 - GFF373 0.16 +1.0 403,954 - GFF373 0.16 -1.5 403,954 - GFF373 0.16 +0.7 403,954 - GFF373 0.16 +0.6 403,954 - GFF373 0.16 +0.1 403,954 - GFF373 0.16 +1.2 403,954 - GFF373 0.16 +0.4 403,954 - GFF373 0.16 -1.1 403,954 - GFF373 0.16 +0.6 403,954 - GFF373 0.16 -0.3 403,954 - GFF373 0.16 -0.3 403,954 - GFF373 0.16 -0.8 404,022 + GFF373 0.32 -0.8 404,022 + GFF373 0.32 -0.9 404,022 + GFF373 0.32 -0.3 404,022 + GFF373 0.32 -1.6 404,022 + GFF373 0.32 +0.4 404,022 + GFF373 0.32 -1.0 404,022 + GFF373 0.32 -1.1 404,022 + GFF373 0.32 -1.2 404,022 + GFF373 0.32 +0.2 404,023 - GFF373 0.32 -0.1 404,023 - GFF373 0.32 +0.2
Or see this region's nucleotide sequence