Strain Fitness in Variovorax sp. SCN45 around GFF3649

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3647 and GFF3648 are separated by 155 nucleotidesGFF3648 and GFF3649 are separated by 51 nucleotidesGFF3649 and GFF3650 are separated by 155 nucleotidesGFF3650 and GFF3651 are separated by 152 nucleotides GFF3647 - Cytochrome b, at 152,997 to 153,710 GFF3647 GFF3648 - putative c'cytochrome, at 153,866 to 154,312 GFF3648 GFF3649 - C-type cytochrome biogenesis protein ResA (thioredoxin), at 154,364 to 154,861 GFF3649 GFF3650 - FIG00932140: hypothetical protein, at 155,017 to 155,502 GFF3650 GFF3651 - PTS system, IIA component, at 155,655 to 156,110 GFF3651 Position (kb) 154 155Strain fitness (log2 ratio) -2 -1 0 1 2at 153.436 kb on + strand, within GFF3647at 153.436 kb on + strand, within GFF3647at 153.436 kb on + strand, within GFF3647at 153.436 kb on + strand, within GFF3647at 153.437 kb on - strand, within GFF3647at 153.437 kb on - strand, within GFF3647at 153.437 kb on - strand, within GFF3647at 153.437 kb on - strand, within GFF3647at 153.437 kb on - strand, within GFF3647at 153.460 kb on + strand, within GFF3647at 153.460 kb on + strand, within GFF3647at 153.460 kb on + strand, within GFF3647at 153.460 kb on + strand, within GFF3647at 153.460 kb on + strand, within GFF3647at 153.460 kb on + strand, within GFF3647at 153.460 kb on + strand, within GFF3647at 153.460 kb on + strand, within GFF3647at 153.461 kb on - strand, within GFF3647at 153.461 kb on - strand, within GFF3647at 153.461 kb on - strand, within GFF3647at 153.461 kb on - strand, within GFF3647at 153.541 kb on + strand, within GFF3647at 153.541 kb on + strand, within GFF3647at 153.541 kb on + strand, within GFF3647at 153.542 kb on - strand, within GFF3647at 153.753 kb on + strandat 153.753 kb on + strandat 153.753 kb on + strandat 153.754 kb on - strandat 153.754 kb on - strandat 153.754 kb on - strandat 153.754 kb on - strandat 153.791 kb on + strandat 153.791 kb on + strandat 153.791 kb on + strandat 153.791 kb on + strandat 153.791 kb on + strandat 153.791 kb on + strandat 153.791 kb on + strandat 153.792 kb on - strandat 153.792 kb on - strandat 153.792 kb on - strandat 153.792 kb on - strandat 153.815 kb on + strandat 153.815 kb on + strandat 153.815 kb on + strandat 153.815 kb on + strandat 153.815 kb on + strandat 153.815 kb on + strandat 153.815 kb on + strandat 153.815 kb on + strandat 153.815 kb on + strandat 153.816 kb on - strandat 153.816 kb on - strandat 153.816 kb on - strandat 153.816 kb on - strandat 153.962 kb on + strand, within GFF3648at 153.962 kb on + strand, within GFF3648at 153.962 kb on + strand, within GFF3648at 153.962 kb on + strand, within GFF3648at 153.962 kb on + strand, within GFF3648at 153.963 kb on - strand, within GFF3648at 153.963 kb on - strand, within GFF3648at 153.963 kb on - strand, within GFF3648at 153.963 kb on - strand, within GFF3648at 153.963 kb on - strand, within GFF3648at 153.963 kb on - strand, within GFF3648at 153.963 kb on - strand, within GFF3648at 154.037 kb on + strand, within GFF3648at 154.038 kb on - strand, within GFF3648at 154.038 kb on - strand, within GFF3648at 154.310 kb on + strandat 154.310 kb on + strandat 154.311 kb on - strandat 154.311 kb on - strandat 154.311 kb on - strandat 154.311 kb on - strandat 154.311 kb on - strandat 154.428 kb on + strand, within GFF3649at 154.428 kb on + strand, within GFF3649at 154.429 kb on - strand, within GFF3649at 154.429 kb on - strand, within GFF3649at 154.464 kb on + strand, within GFF3649at 154.464 kb on + strand, within GFF3649at 154.464 kb on + strand, within GFF3649at 154.464 kb on + strand, within GFF3649at 154.464 kb on + strand, within GFF3649at 154.464 kb on + strand, within GFF3649at 154.464 kb on + strand, within GFF3649at 154.464 kb on + strand, within GFF3649at 154.464 kb on + strand, within GFF3649at 154.464 kb on + strand, within GFF3649at 154.464 kb on + strand, within GFF3649at 154.464 kb on + strand, within GFF3649at 154.464 kb on + strand, within GFF3649at 154.464 kb on + strand, within GFF3649at 154.464 kb on + strand, within GFF3649at 154.464 kb on + strand, within GFF3649at 154.465 kb on - strand, within GFF3649at 154.465 kb on - strand, within GFF3649at 154.465 kb on - strand, within GFF3649at 154.465 kb on - strand, within GFF3649at 154.465 kb on - strand, within GFF3649at 154.465 kb on - strand, within GFF3649at 154.465 kb on - strand, within GFF3649at 154.465 kb on - strand, within GFF3649at 154.465 kb on - strand, within GFF3649at 154.572 kb on + strand, within GFF3649at 154.572 kb on + strand, within GFF3649at 154.572 kb on + strand, within GFF3649at 154.572 kb on + strand, within GFF3649at 154.573 kb on - strand, within GFF3649at 154.573 kb on - strand, within GFF3649at 154.573 kb on - strand, within GFF3649at 154.573 kb on - strand, within GFF3649at 154.573 kb on - strand, within GFF3649at 154.573 kb on - strand, within GFF3649at 154.573 kb on - strand, within GFF3649at 154.573 kb on - strand, within GFF3649at 154.573 kb on - strand, within GFF3649at 154.573 kb on - strand, within GFF3649at 154.573 kb on - strand, within GFF3649at 154.587 kb on + strand, within GFF3649at 154.587 kb on + strand, within GFF3649at 154.587 kb on + strand, within GFF3649at 154.587 kb on + strand, within GFF3649at 154.587 kb on + strand, within GFF3649at 154.587 kb on + strand, within GFF3649at 154.587 kb on + strand, within GFF3649at 154.587 kb on + strand, within GFF3649at 154.587 kb on + strand, within GFF3649at 154.587 kb on + strand, within GFF3649at 154.587 kb on + strand, within GFF3649at 154.588 kb on - strand, within GFF3649at 154.588 kb on - strand, within GFF3649at 154.588 kb on - strand, within GFF3649at 154.588 kb on - strand, within GFF3649at 154.588 kb on - strand, within GFF3649at 154.588 kb on - strand, within GFF3649at 154.588 kb on - strand, within GFF3649at 154.588 kb on - strand, within GFF3649at 154.588 kb on - strand, within GFF3649at 154.614 kb on + strand, within GFF3649at 154.614 kb on + strand, within GFF3649at 154.615 kb on - strand, within GFF3649at 154.615 kb on - strand, within GFF3649at 154.615 kb on - strand, within GFF3649at 154.629 kb on + strand, within GFF3649at 154.629 kb on + strand, within GFF3649at 154.629 kb on + strand, within GFF3649at 154.629 kb on + strand, within GFF3649at 154.629 kb on + strand, within GFF3649at 154.629 kb on + strand, within GFF3649at 154.629 kb on + strand, within GFF3649at 154.630 kb on - strand, within GFF3649at 154.630 kb on - strand, within GFF3649at 154.630 kb on - strand, within GFF3649at 154.630 kb on - strand, within GFF3649at 154.630 kb on - strand, within GFF3649at 154.630 kb on - strand, within GFF3649at 154.630 kb on - strand, within GFF3649at 154.630 kb on - strand, within GFF3649at 154.630 kb on - strand, within GFF3649at 154.630 kb on - strand, within GFF3649at 154.638 kb on + strand, within GFF3649at 154.638 kb on + strand, within GFF3649at 154.638 kb on + strand, within GFF3649at 154.638 kb on + strand, within GFF3649at 154.638 kb on + strand, within GFF3649at 154.639 kb on - strand, within GFF3649at 154.639 kb on - strand, within GFF3649at 154.639 kb on - strand, within GFF3649at 154.639 kb on - strand, within GFF3649at 154.639 kb on - strand, within GFF3649at 154.800 kb on + strand, within GFF3649at 154.800 kb on + strand, within GFF3649at 154.800 kb on + strand, within GFF3649at 154.800 kb on + strand, within GFF3649at 154.800 kb on + strand, within GFF3649at 154.800 kb on + strand, within GFF3649at 154.800 kb on + strand, within GFF3649at 154.800 kb on + strand, within GFF3649at 154.800 kb on + strand, within GFF3649at 154.800 kb on + strand, within GFF3649at 154.801 kb on - strand, within GFF3649at 154.801 kb on - strand, within GFF3649at 154.801 kb on - strand, within GFF3649at 154.801 kb on - strand, within GFF3649at 154.801 kb on - strand, within GFF3649at 154.801 kb on - strand, within GFF3649at 154.801 kb on - strand, within GFF3649at 154.851 kb on + strandat 154.851 kb on + strandat 154.851 kb on + strandat 154.852 kb on - strandat 154.869 kb on + strandat 154.869 kb on + strandat 154.869 kb on + strandat 154.869 kb on + strandat 154.869 kb on + strandat 154.870 kb on - strandat 154.870 kb on - strandat 154.870 kb on - strandat 154.892 kb on + strandat 155.375 kb on + strand, within GFF3650at 155.375 kb on + strand, within GFF3650at 155.375 kb on + strand, within GFF3650at 155.375 kb on + strand, within GFF3650at 155.375 kb on + strand, within GFF3650at 155.375 kb on + strand, within GFF3650at 155.375 kb on + strand, within GFF3650at 155.375 kb on + strand, within GFF3650at 155.375 kb on + strand, within GFF3650at 155.375 kb on + strand, within GFF3650at 155.375 kb on + strand, within GFF3650at 155.376 kb on - strand, within GFF3650at 155.376 kb on - strand, within GFF3650at 155.376 kb on - strand, within GFF3650at 155.425 kb on + strand, within GFF3650at 155.426 kb on - strand, within GFF3650at 155.426 kb on - strand, within GFF3650at 155.426 kb on - strand, within GFF3650at 155.509 kb on + strandat 155.510 kb on - strandat 155.510 kb on - strandat 155.510 kb on - strandat 155.524 kb on - strandat 155.534 kb on + strandat 155.600 kb on + strandat 155.601 kb on + strandat 155.601 kb on + strandat 155.601 kb on + strandat 155.601 kb on + strandat 155.601 kb on + strandat 155.601 kb on + strandat 155.601 kb on + strandat 155.601 kb on + strandat 155.601 kb on + strandat 155.601 kb on + strandat 155.601 kb on + strandat 155.601 kb on + strandat 155.602 kb on - strandat 155.602 kb on - strandat 155.602 kb on - strandat 155.602 kb on - strandat 155.602 kb on - strandat 155.602 kb on - strandat 155.602 kb on - strandat 155.602 kb on - strandat 155.602 kb on - strandat 155.605 kb on + strandat 155.605 kb on + strandat 155.605 kb on + strandat 155.605 kb on + strandat 155.605 kb on + strandat 155.605 kb on + strandat 155.605 kb on + strandat 155.605 kb on + strandat 155.605 kb on + strandat 155.605 kb on + strandat 155.605 kb on + strandat 155.605 kb on + strandat 155.605 kb on + strandat 155.605 kb on + strandat 155.605 kb on + strandat 155.605 kb on + strandat 155.605 kb on + strandat 155.605 kb on + strandat 155.605 kb on + strandat 155.605 kb on + strandat 155.605 kb on + strandat 155.605 kb on + strandat 155.605 kb on + strandat 155.605 kb on + strandat 155.605 kb on + strandat 155.605 kb on + strandat 155.605 kb on + strandat 155.605 kb on + strandat 155.605 kb on + strandat 155.605 kb on + strandat 155.605 kb on + strandat 155.606 kb on - strandat 155.606 kb on - strandat 155.606 kb on - strandat 155.606 kb on - strandat 155.606 kb on - strandat 155.606 kb on - strandat 155.606 kb on - strandat 155.606 kb on - strandat 155.606 kb on - strandat 155.606 kb on - strandat 155.606 kb on - strandat 155.606 kb on - strandat 155.606 kb on - strandat 155.606 kb on - strandat 155.606 kb on - strandat 155.606 kb on - strandat 155.606 kb on - strandat 155.606 kb on - strandat 155.606 kb on - strandat 155.628 kb on + strandat 155.628 kb on + strandat 155.628 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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153,436 + GFF3647 0.61 -1.3
153,436 + GFF3647 0.61 +0.1
153,436 + GFF3647 0.61 +0.4
153,436 + GFF3647 0.61 -0.8
153,437 - GFF3647 0.62 -0.2
153,437 - GFF3647 0.62 -0.2
153,437 - GFF3647 0.62 -0.3
153,437 - GFF3647 0.62 +0.2
153,437 - GFF3647 0.62 +1.1
153,460 + GFF3647 0.65 -0.9
153,460 + GFF3647 0.65 +1.2
153,460 + GFF3647 0.65 -0.1
153,460 + GFF3647 0.65 +0.3
153,460 + GFF3647 0.65 +0.1
153,460 + GFF3647 0.65 +0.2
153,460 + GFF3647 0.65 +0.7
153,460 + GFF3647 0.65 -0.0
153,461 - GFF3647 0.65 -1.5
153,461 - GFF3647 0.65 -0.1
153,461 - GFF3647 0.65 +0.1
153,461 - GFF3647 0.65 -0.6
153,541 + GFF3647 0.76 -0.4
153,541 + GFF3647 0.76 +0.7
153,541 + GFF3647 0.76 -1.2
153,542 - GFF3647 0.76 +0.2
153,753 + -1.0
153,753 + +1.8
153,753 + +1.4
153,754 - -0.6
153,754 - -0.3
153,754 - -0.4
153,754 - -0.6
153,791 + -0.2
153,791 + -0.1
153,791 + -0.9
153,791 + -0.2
153,791 + -1.2
153,791 + +1.1
153,791 + +0.3
153,792 - +0.5
153,792 - -0.0
153,792 - -0.6
153,792 - -1.3
153,815 + -0.7
153,815 + -0.5
153,815 + +0.3
153,815 + -0.1
153,815 + -0.6
153,815 + +1.0
153,815 + -0.3
153,815 + +0.1
153,815 + -0.3
153,816 - -0.4
153,816 - -2.0
153,816 - -0.1
153,816 - -0.5
153,962 + GFF3648 0.21 +0.6
153,962 + GFF3648 0.21 +0.7
153,962 + GFF3648 0.21 +0.4
153,962 + GFF3648 0.21 -0.3
153,962 + GFF3648 0.21 -1.2
153,963 - GFF3648 0.22 +0.6
153,963 - GFF3648 0.22 -0.9
153,963 - GFF3648 0.22 -0.2
153,963 - GFF3648 0.22 -0.2
153,963 - GFF3648 0.22 -0.6
153,963 - GFF3648 0.22 +0.3
153,963 - GFF3648 0.22 -0.2
154,037 + GFF3648 0.38 -0.6
154,038 - GFF3648 0.38 -1.1
154,038 - GFF3648 0.38 -1.0
154,310 + -0.6
154,310 + -0.0
154,311 - -0.2
154,311 - +0.1
154,311 - +0.3
154,311 - -0.2
154,311 - +0.5
154,428 + GFF3649 0.13 +0.0
154,428 + GFF3649 0.13 -1.7
154,429 - GFF3649 0.13 -1.7
154,429 - GFF3649 0.13 -1.2
154,464 + GFF3649 0.20 +0.6
154,464 + GFF3649 0.20 -2.0
154,464 + GFF3649 0.20 -1.4
154,464 + GFF3649 0.20 -0.2
154,464 + GFF3649 0.20 -1.9
154,464 + GFF3649 0.20 -0.6
154,464 + GFF3649 0.20 -1.0
154,464 + GFF3649 0.20 -1.5
154,464 + GFF3649 0.20 -1.7
154,464 + GFF3649 0.20 -0.2
154,464 + GFF3649 0.20 -1.6
154,464 + GFF3649 0.20 -0.3
154,464 + GFF3649 0.20 -1.2
154,464 + GFF3649 0.20 -1.2
154,464 + GFF3649 0.20 +0.3
154,464 + GFF3649 0.20 +0.4
154,465 - GFF3649 0.20 -1.6
154,465 - GFF3649 0.20 +0.3
154,465 - GFF3649 0.20 -2.5
154,465 - GFF3649 0.20 -1.2
154,465 - GFF3649 0.20 +0.1
154,465 - GFF3649 0.20 +0.3
154,465 - GFF3649 0.20 -2.3
154,465 - GFF3649 0.20 +0.0
154,465 - GFF3649 0.20 -1.2
154,572 + GFF3649 0.42 -2.1
154,572 + GFF3649 0.42 -1.3
154,572 + GFF3649 0.42 -1.4
154,572 + GFF3649 0.42 -1.2
154,573 - GFF3649 0.42 -2.7
154,573 - GFF3649 0.42 +0.3
154,573 - GFF3649 0.42 -2.1
154,573 - GFF3649 0.42 -0.5
154,573 - GFF3649 0.42 -0.3
154,573 - GFF3649 0.42 -1.0
154,573 - GFF3649 0.42 -0.5
154,573 - GFF3649 0.42 +0.8
154,573 - GFF3649 0.42 +0.0
154,573 - GFF3649 0.42 +1.8
154,573 - GFF3649 0.42 +0.8
154,587 + GFF3649 0.45 -0.5
154,587 + GFF3649 0.45 +0.8
154,587 + GFF3649 0.45 -0.5
154,587 + GFF3649 0.45 -0.2
154,587 + GFF3649 0.45 -1.7
154,587 + GFF3649 0.45 -0.9
154,587 + GFF3649 0.45 -0.2
154,587 + GFF3649 0.45 -1.5
154,587 + GFF3649 0.45 +0.0
154,587 + GFF3649 0.45 -2.0
154,587 + GFF3649 0.45 -1.7
154,588 - GFF3649 0.45 +1.8
154,588 - GFF3649 0.45 +0.6
154,588 - GFF3649 0.45 -0.2
154,588 - GFF3649 0.45 -0.6
154,588 - GFF3649 0.45 +0.0
154,588 - GFF3649 0.45 -0.0
154,588 - GFF3649 0.45 -0.7
154,588 - GFF3649 0.45 +0.5
154,588 - GFF3649 0.45 -1.2
154,614 + GFF3649 0.50 -1.5
154,614 + GFF3649 0.50 -0.3
154,615 - GFF3649 0.50 +0.0
154,615 - GFF3649 0.50 -0.2
154,615 - GFF3649 0.50 -0.7
154,629 + GFF3649 0.53 +0.3
154,629 + GFF3649 0.53 -1.2
154,629 + GFF3649 0.53 -2.4
154,629 + GFF3649 0.53 +0.0
154,629 + GFF3649 0.53 +0.0
154,629 + GFF3649 0.53 -0.7
154,629 + GFF3649 0.53 -1.4
154,630 - GFF3649 0.53 -0.7
154,630 - GFF3649 0.53 -1.0
154,630 - GFF3649 0.53 -0.3
154,630 - GFF3649 0.53 +0.1
154,630 - GFF3649 0.53 -1.6
154,630 - GFF3649 0.53 -0.2
154,630 - GFF3649 0.53 -2.4
154,630 - GFF3649 0.53 -1.2
154,630 - GFF3649 0.53 -0.3
154,630 - GFF3649 0.53 +0.9
154,638 + GFF3649 0.55 -1.7
154,638 + GFF3649 0.55 -1.0
154,638 + GFF3649 0.55 -1.2
154,638 + GFF3649 0.55 -0.2
154,638 + GFF3649 0.55 -1.5
154,639 - GFF3649 0.55 -0.4
154,639 - GFF3649 0.55 -1.0
154,639 - GFF3649 0.55 -1.8
154,639 - GFF3649 0.55 -1.0
154,639 - GFF3649 0.55 -0.9
154,800 + GFF3649 0.88 -1.3
154,800 + GFF3649 0.88 -1.2
154,800 + GFF3649 0.88 -0.7
154,800 + GFF3649 0.88 -1.0
154,800 + GFF3649 0.88 -1.5
154,800 + GFF3649 0.88 -0.3
154,800 + GFF3649 0.88 -0.4
154,800 + GFF3649 0.88 -1.7
154,800 + GFF3649 0.88 -0.5
154,800 + GFF3649 0.88 -0.7
154,801 - GFF3649 0.88 +0.8
154,801 - GFF3649 0.88 -1.5
154,801 - GFF3649 0.88 -2.5
154,801 - GFF3649 0.88 +0.1
154,801 - GFF3649 0.88 -0.7
154,801 - GFF3649 0.88 -1.3
154,801 - GFF3649 0.88 -1.4
154,851 + -0.7
154,851 + -0.1
154,851 + -1.2
154,852 - -0.4
154,869 + -0.2
154,869 + +0.3
154,869 + -0.2
154,869 + +0.0
154,869 + -0.6
154,870 - -0.4
154,870 - -0.8
154,870 - -0.0
154,892 + +0.8
155,375 + GFF3650 0.74 -0.5
155,375 + GFF3650 0.74 -1.2
155,375 + GFF3650 0.74 -0.9
155,375 + GFF3650 0.74 +0.1
155,375 + GFF3650 0.74 -0.2
155,375 + GFF3650 0.74 +0.3
155,375 + GFF3650 0.74 +0.1
155,375 + GFF3650 0.74 -0.0
155,375 + GFF3650 0.74 -0.5
155,375 + GFF3650 0.74 -0.2
155,375 + GFF3650 0.74 -0.6
155,376 - GFF3650 0.74 -1.0
155,376 - GFF3650 0.74 -1.3
155,376 - GFF3650 0.74 -1.6
155,425 + GFF3650 0.84 -0.3
155,426 - GFF3650 0.84 -0.6
155,426 - GFF3650 0.84 -1.4
155,426 - GFF3650 0.84 +0.8
155,509 + +0.4
155,510 - -1.9
155,510 - -0.3
155,510 - -0.2
155,524 - +0.5
155,534 + -0.6
155,600 + +0.0
155,601 + -0.7
155,601 + -1.5
155,601 + -0.3
155,601 + +0.3
155,601 + -0.7
155,601 + -0.1
155,601 + -0.2
155,601 + +0.3
155,601 + +0.1
155,601 + -1.0
155,601 + +0.6
155,601 + -1.1
155,602 - +0.0
155,602 - -0.8
155,602 - -0.4
155,602 - -0.7
155,602 - -0.5
155,602 - +0.3
155,602 - -0.2
155,602 - +1.0
155,602 - +0.6
155,605 + -0.5
155,605 + +0.2
155,605 + -0.3
155,605 + +0.1
155,605 + -0.1
155,605 + +0.8
155,605 + -0.4
155,605 + -0.4
155,605 + -1.1
155,605 + +0.3
155,605 + -0.7
155,605 + +0.2
155,605 + -0.1
155,605 + -0.5
155,605 + -0.4
155,605 + -0.3
155,605 + +0.1
155,605 + -0.6
155,605 + -0.4
155,605 + -0.3
155,605 + -0.6
155,605 + -0.5
155,605 + -1.7
155,605 + -0.7
155,605 + +0.1
155,605 + +0.5
155,605 + -0.6
155,605 + -0.3
155,605 + -0.7
155,605 + -0.5
155,605 + +0.3
155,606 - -0.1
155,606 - +0.2
155,606 - -0.5
155,606 - -0.1
155,606 - -0.2
155,606 - +0.1
155,606 - -0.7
155,606 - +0.1
155,606 - -0.2
155,606 - -0.3
155,606 - +0.1
155,606 - -0.8
155,606 - -0.2
155,606 - -0.9
155,606 - +0.4
155,606 - -0.7
155,606 - +1.4
155,606 - +1.1
155,606 - -0.4
155,628 + -1.2
155,628 + +0.0
155,628 + +0.0

Or see this region's nucleotide sequence