Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3583 and GFF3584 are separated by 40 nucleotides GFF3584 and GFF3585 overlap by 23 nucleotides GFF3585 and GFF3586 are separated by 23 nucleotides
GFF3583 - AMP nucleosidase (EC 3.2.2.4), at 94,255 to 95,772
GFF3583
GFF3584 - hypothetical protein, at 95,813 to 96,334
GFF3584
GFF3585 - Sulfate transport system permease protein CysT, at 96,312 to 97,133
GFF3585
GFF3586 - ABC-type Fe3+ transport system, periplasmic component, at 97,157 to 98,236
GFF3586
Position (kb) 95
96
97 Strain fitness (log2 ratio) -2
-1
0
1
2 at 94.928 kb on + strand, within GFF3583 at 94.929 kb on - strand, within GFF3583 at 95.063 kb on + strand, within GFF3583 at 95.063 kb on + strand, within GFF3583 at 95.063 kb on + strand, within GFF3583 at 95.064 kb on - strand, within GFF3583 at 95.064 kb on - strand, within GFF3583 at 95.064 kb on - strand, within GFF3583 at 95.064 kb on - strand, within GFF3583 at 95.120 kb on + strand, within GFF3583 at 95.121 kb on - strand, within GFF3583 at 95.121 kb on - strand, within GFF3583 at 95.121 kb on - strand, within GFF3583 at 95.129 kb on + strand, within GFF3583 at 95.130 kb on - strand, within GFF3583 at 95.181 kb on - strand, within GFF3583 at 95.205 kb on - strand, within GFF3583 at 95.471 kb on + strand, within GFF3583 at 95.471 kb on + strand, within GFF3583 at 95.471 kb on + strand, within GFF3583 at 95.472 kb on - strand, within GFF3583 at 95.474 kb on + strand, within GFF3583 at 95.475 kb on - strand, within GFF3583 at 95.514 kb on - strand, within GFF3583 at 95.609 kb on + strand, within GFF3583 at 95.693 kb on + strand at 95.693 kb on + strand at 95.694 kb on - strand at 95.694 kb on - strand at 95.694 kb on - strand at 95.694 kb on - strand at 95.694 kb on - strand at 95.694 kb on - strand at 95.765 kb on + strand at 95.765 kb on + strand at 95.765 kb on + strand at 95.765 kb on + strand at 95.765 kb on + strand at 95.765 kb on + strand at 95.765 kb on + strand at 95.765 kb on + strand at 95.765 kb on + strand at 95.765 kb on + strand at 95.766 kb on - strand at 95.766 kb on - strand at 95.815 kb on - strand at 95.815 kb on - strand at 96.204 kb on + strand, within GFF3584 at 96.205 kb on - strand, within GFF3584 at 96.354 kb on - strand at 96.514 kb on + strand, within GFF3585 at 96.514 kb on + strand, within GFF3585 at 96.514 kb on + strand, within GFF3585 at 96.515 kb on - strand, within GFF3585 at 96.515 kb on - strand, within GFF3585 at 96.515 kb on - strand, within GFF3585 at 96.515 kb on - strand, within GFF3585 at 96.700 kb on + strand, within GFF3585 at 96.700 kb on + strand, within GFF3585 at 96.701 kb on - strand, within GFF3585 at 96.703 kb on + strand, within GFF3585 at 96.703 kb on + strand, within GFF3585 at 96.703 kb on + strand, within GFF3585 at 96.703 kb on + strand, within GFF3585 at 96.703 kb on + strand, within GFF3585 at 96.703 kb on + strand, within GFF3585 at 96.703 kb on + strand, within GFF3585 at 96.703 kb on + strand, within GFF3585 at 96.704 kb on - strand, within GFF3585 at 96.704 kb on - strand, within GFF3585 at 96.704 kb on - strand, within GFF3585 at 96.704 kb on - strand, within GFF3585 at 96.704 kb on - strand, within GFF3585 at 96.704 kb on - strand, within GFF3585 at 96.704 kb on - strand, within GFF3585 at 96.704 kb on - strand, within GFF3585 at 96.704 kb on - strand, within GFF3585 at 96.704 kb on - strand, within GFF3585 at 96.709 kb on + strand, within GFF3585 at 96.710 kb on - strand, within GFF3585 at 96.710 kb on - strand, within GFF3585 at 96.736 kb on + strand, within GFF3585 at 96.736 kb on + strand, within GFF3585 at 96.736 kb on + strand, within GFF3585 at 96.737 kb on - strand, within GFF3585 at 96.737 kb on - strand, within GFF3585 at 96.737 kb on - strand, within GFF3585 at 96.737 kb on - strand, within GFF3585 at 97.158 kb on + strand at 97.158 kb on + strand at 97.159 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 94,928 + GFF3583 0.44 -2.4 94,929 - GFF3583 0.44 +0.0 95,063 + GFF3583 0.53 -0.2 95,063 + GFF3583 0.53 -0.8 95,063 + GFF3583 0.53 -1.3 95,064 - GFF3583 0.53 +0.1 95,064 - GFF3583 0.53 -1.1 95,064 - GFF3583 0.53 -2.2 95,064 - GFF3583 0.53 -0.2 95,120 + GFF3583 0.57 -0.9 95,121 - GFF3583 0.57 -0.2 95,121 - GFF3583 0.57 -0.4 95,121 - GFF3583 0.57 -0.5 95,129 + GFF3583 0.58 +0.2 95,130 - GFF3583 0.58 -0.2 95,181 - GFF3583 0.61 +1.1 95,205 - GFF3583 0.63 -0.9 95,471 + GFF3583 0.80 -0.4 95,471 + GFF3583 0.80 +0.2 95,471 + GFF3583 0.80 -0.2 95,472 - GFF3583 0.80 -0.8 95,474 + GFF3583 0.80 -0.5 95,475 - GFF3583 0.80 +0.2 95,514 - GFF3583 0.83 +1.4 95,609 + GFF3583 0.89 +1.4 95,693 + +1.8 95,693 + -2.1 95,694 - -0.5 95,694 - +0.5 95,694 - -1.1 95,694 - -0.7 95,694 - -0.7 95,694 - +0.2 95,765 + +0.3 95,765 + -0.5 95,765 + +1.1 95,765 + -0.9 95,765 + -0.4 95,765 + -2.6 95,765 + +1.8 95,765 + -1.0 95,765 + -0.1 95,765 + -0.4 95,766 - -1.2 95,766 - +1.0 95,815 - -0.5 95,815 - -0.3 96,204 + GFF3584 0.75 -0.8 96,205 - GFF3584 0.75 -0.5 96,354 - +0.7 96,514 + GFF3585 0.25 +0.3 96,514 + GFF3585 0.25 -1.0 96,514 + GFF3585 0.25 -0.1 96,515 - GFF3585 0.25 -0.3 96,515 - GFF3585 0.25 -1.0 96,515 - GFF3585 0.25 -1.0 96,515 - GFF3585 0.25 -0.7 96,700 + GFF3585 0.47 +0.5 96,700 + GFF3585 0.47 +0.0 96,701 - GFF3585 0.47 +1.5 96,703 + GFF3585 0.48 -0.7 96,703 + GFF3585 0.48 +0.3 96,703 + GFF3585 0.48 -0.2 96,703 + GFF3585 0.48 -0.5 96,703 + GFF3585 0.48 -0.4 96,703 + GFF3585 0.48 -0.8 96,703 + GFF3585 0.48 +0.5 96,703 + GFF3585 0.48 -0.3 96,704 - GFF3585 0.48 -0.3 96,704 - GFF3585 0.48 -0.0 96,704 - GFF3585 0.48 -0.4 96,704 - GFF3585 0.48 -0.5 96,704 - GFF3585 0.48 -0.1 96,704 - GFF3585 0.48 +0.6 96,704 - GFF3585 0.48 -0.5 96,704 - GFF3585 0.48 -0.6 96,704 - GFF3585 0.48 +0.1 96,704 - GFF3585 0.48 +0.1 96,709 + GFF3585 0.48 +1.1 96,710 - GFF3585 0.48 -0.3 96,710 - GFF3585 0.48 -0.4 96,736 + GFF3585 0.52 -0.9 96,736 + GFF3585 0.52 -0.2 96,736 + GFF3585 0.52 -0.8 96,737 - GFF3585 0.52 +0.7 96,737 - GFF3585 0.52 -0.1 96,737 - GFF3585 0.52 -0.3 96,737 - GFF3585 0.52 -0.1 97,158 + +1.4 97,158 + -0.6 97,159 - +1.3
Or see this region's nucleotide sequence