Strain Fitness in Variovorax sp. SCN45 around GFF3556

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3555 and GFF3556 are separated by 76 nucleotidesGFF3556 and GFF3557 are separated by 143 nucleotides GFF3555 - Mg-chelatase subunit ChlD, at 65,031 to 66,245 GFF3555 GFF3556 - BUG/TctC family periplasmic protein, at 66,322 to 67,314 GFF3556 GFF3557 - hypothetical protein, at 67,458 to 69,131 GFF3557 Position (kb) 66 67 68Strain fitness (log2 ratio) -2 -1 0 1 2 3at 65.637 kb on + strand, within GFF3555at 65.751 kb on + strand, within GFF3555at 65.751 kb on + strand, within GFF3555at 65.751 kb on + strand, within GFF3555at 65.751 kb on + strand, within GFF3555at 65.751 kb on + strand, within GFF3555at 65.751 kb on + strand, within GFF3555at 65.752 kb on - strand, within GFF3555at 65.752 kb on - strand, within GFF3555at 65.752 kb on - strand, within GFF3555at 65.920 kb on - strand, within GFF3555at 65.920 kb on - strand, within GFF3555at 65.920 kb on - strand, within GFF3555at 65.979 kb on + strand, within GFF3555at 65.979 kb on + strand, within GFF3555at 65.979 kb on + strand, within GFF3555at 65.979 kb on + strand, within GFF3555at 65.979 kb on + strand, within GFF3555at 65.979 kb on + strand, within GFF3555at 65.979 kb on + strand, within GFF3555at 65.979 kb on + strand, within GFF3555at 65.980 kb on - strand, within GFF3555at 65.980 kb on - strand, within GFF3555at 65.980 kb on - strand, within GFF3555at 65.980 kb on - strand, within GFF3555at 66.088 kb on - strand, within GFF3555at 66.296 kb on + strandat 66.296 kb on + strandat 66.297 kb on - strandat 66.652 kb on + strand, within GFF3556at 66.667 kb on + strand, within GFF3556at 66.667 kb on + strand, within GFF3556at 66.667 kb on + strand, within GFF3556at 66.667 kb on + strand, within GFF3556at 66.667 kb on + strand, within GFF3556at 66.667 kb on + strand, within GFF3556at 66.667 kb on + strand, within GFF3556at 66.667 kb on + strand, within GFF3556at 66.668 kb on - strand, within GFF3556at 66.668 kb on - strand, within GFF3556at 66.668 kb on - strand, within GFF3556at 66.668 kb on - strand, within GFF3556at 66.668 kb on - strand, within GFF3556at 66.668 kb on - strand, within GFF3556at 66.668 kb on - strand, within GFF3556at 66.668 kb on - strand, within GFF3556at 66.668 kb on - strand, within GFF3556at 66.668 kb on - strand, within GFF3556at 67.329 kb on + strandat 67.329 kb on + strandat 67.372 kb on + strandat 67.372 kb on + strandat 67.373 kb on - strandat 67.386 kb on + strandat 67.386 kb on + strandat 67.386 kb on + strandat 67.386 kb on + strandat 67.386 kb on + strandat 67.386 kb on + strandat 67.387 kb on - strandat 67.387 kb on - strandat 67.387 kb on - strandat 67.387 kb on - strandat 67.387 kb on - strandat 67.387 kb on - strandat 67.530 kb on + strandat 67.530 kb on + strandat 67.530 kb on + strandat 67.530 kb on + strandat 67.530 kb on + strandat 67.530 kb on + strandat 67.530 kb on + strandat 67.530 kb on + strandat 67.530 kb on + strandat 67.530 kb on + strandat 67.531 kb on - strandat 67.531 kb on - strandat 67.531 kb on - strandat 67.531 kb on - strandat 67.531 kb on - strandat 67.531 kb on - strandat 67.531 kb on - strandat 67.531 kb on - strandat 67.827 kb on + strand, within GFF3557at 67.827 kb on + strand, within GFF3557at 67.827 kb on + strand, within GFF3557at 67.828 kb on - strand, within GFF3557at 67.828 kb on - strand, within GFF3557at 67.828 kb on - strand, within GFF3557at 67.974 kb on + strand, within GFF3557at 67.974 kb on + strand, within GFF3557at 67.975 kb on - strand, within GFF3557at 67.975 kb on - strand, within GFF3557at 68.160 kb on + strand, within GFF3557at 68.160 kb on + strand, within GFF3557at 68.160 kb on + strand, within GFF3557at 68.160 kb on + strand, within GFF3557at 68.235 kb on + strand, within GFF3557at 68.235 kb on + strand, within GFF3557at 68.235 kb on + strand, within GFF3557at 68.235 kb on + strand, within GFF3557at 68.235 kb on + strand, within GFF3557at 68.235 kb on + strand, within GFF3557at 68.235 kb on + strand, within GFF3557at 68.235 kb on + strand, within GFF3557at 68.235 kb on + strand, within GFF3557at 68.235 kb on + strand, within GFF3557at 68.235 kb on + strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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65,637 + GFF3555 0.50 -0.8
65,751 + GFF3555 0.59 +0.8
65,751 + GFF3555 0.59 -0.1
65,751 + GFF3555 0.59 +1.0
65,751 + GFF3555 0.59 -0.4
65,751 + GFF3555 0.59 -0.7
65,751 + GFF3555 0.59 +0.1
65,752 - GFF3555 0.59 -1.4
65,752 - GFF3555 0.59 +0.0
65,752 - GFF3555 0.59 -0.5
65,920 - GFF3555 0.73 -0.3
65,920 - GFF3555 0.73 +0.1
65,920 - GFF3555 0.73 +0.5
65,979 + GFF3555 0.78 -0.6
65,979 + GFF3555 0.78 +0.1
65,979 + GFF3555 0.78 -2.3
65,979 + GFF3555 0.78 -0.3
65,979 + GFF3555 0.78 +0.2
65,979 + GFF3555 0.78 -0.1
65,979 + GFF3555 0.78 -0.1
65,979 + GFF3555 0.78 -0.2
65,980 - GFF3555 0.78 -0.8
65,980 - GFF3555 0.78 -0.1
65,980 - GFF3555 0.78 +0.1
65,980 - GFF3555 0.78 -1.3
66,088 - GFF3555 0.87 -2.2
66,296 + +1.8
66,296 + +0.7
66,297 - +0.5
66,652 + GFF3556 0.33 +0.1
66,667 + GFF3556 0.35 +0.8
66,667 + GFF3556 0.35 -0.2
66,667 + GFF3556 0.35 -0.2
66,667 + GFF3556 0.35 -1.7
66,667 + GFF3556 0.35 -1.0
66,667 + GFF3556 0.35 +0.1
66,667 + GFF3556 0.35 +1.1
66,667 + GFF3556 0.35 +0.1
66,668 - GFF3556 0.35 +0.0
66,668 - GFF3556 0.35 -0.2
66,668 - GFF3556 0.35 +0.1
66,668 - GFF3556 0.35 +0.2
66,668 - GFF3556 0.35 +2.8
66,668 - GFF3556 0.35 -0.1
66,668 - GFF3556 0.35 +0.1
66,668 - GFF3556 0.35 +0.1
66,668 - GFF3556 0.35 +0.5
66,668 - GFF3556 0.35 +0.7
67,329 + -0.5
67,329 + -0.6
67,372 + -1.2
67,372 + -0.4
67,373 - -0.5
67,386 + +0.2
67,386 + +0.1
67,386 + -1.1
67,386 + -0.3
67,386 + -0.2
67,386 + -0.2
67,387 - +0.5
67,387 - +0.1
67,387 - -0.2
67,387 - +0.7
67,387 - -0.2
67,387 - -0.5
67,530 + +0.8
67,530 + -0.2
67,530 + +1.4
67,530 + +0.1
67,530 + +0.2
67,530 + -0.1
67,530 + -0.0
67,530 + -0.1
67,530 + +0.6
67,530 + +0.4
67,531 - +0.1
67,531 - +0.0
67,531 - -0.3
67,531 - -0.1
67,531 - -0.2
67,531 - +0.1
67,531 - -0.5
67,531 - -0.7
67,827 + GFF3557 0.22 +0.1
67,827 + GFF3557 0.22 -1.6
67,827 + GFF3557 0.22 -1.0
67,828 - GFF3557 0.22 +0.5
67,828 - GFF3557 0.22 +0.5
67,828 - GFF3557 0.22 +0.8
67,974 + GFF3557 0.31 +0.4
67,974 + GFF3557 0.31 -1.6
67,975 - GFF3557 0.31 -0.5
67,975 - GFF3557 0.31 -0.8
68,160 + GFF3557 0.42 -1.1
68,160 + GFF3557 0.42 -0.1
68,160 + GFF3557 0.42 -0.2
68,160 + GFF3557 0.42 -1.6
68,235 + GFF3557 0.46 -1.1
68,235 + GFF3557 0.46 -1.8
68,235 + GFF3557 0.46 -0.2
68,235 + GFF3557 0.46 -0.1
68,235 + GFF3557 0.46 -0.6
68,235 + GFF3557 0.46 +1.8
68,235 + GFF3557 0.46 -0.0
68,235 + GFF3557 0.46 +0.7
68,235 + GFF3557 0.46 -0.4
68,235 + GFF3557 0.46 +0.5
68,235 + GFF3557 0.46 -0.2
68,236 - GFF3557 0.46 -1.0
68,236 - GFF3557 0.46 -0.1
68,236 - GFF3557 0.46 +1.0
68,236 - GFF3557 0.46 -0.2
68,236 - GFF3557 0.46 +0.1
68,236 - GFF3557 0.46 +0.0
68,236 - GFF3557 0.46 -0.3
68,236 - GFF3557 0.46 +0.2
68,236 - GFF3557 0.46 +0.3
68,236 - GFF3557 0.46 +0.8
68,236 - GFF3557 0.46 -1.1
68,236 - GFF3557 0.46 +0.8
68,236 - GFF3557 0.46 -0.5
68,236 - GFF3557 0.46 +0.2
68,236 - GFF3557 0.46 -0.6
68,236 - GFF3557 0.46 -0.5
68,236 - GFF3557 0.46 +0.5
68,236 - GFF3557 0.46 -0.7
68,236 - GFF3557 0.46 -0.6
68,236 - GFF3557 0.46 -0.2
68,236 - GFF3557 0.46 +1.1

Or see this region's nucleotide sequence